Rroxscaffold_2G00111100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017812
Physical Location & Seq
Reverse (-)
35640130 .. 35658493
18364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111100.1

Sequence Viewer

Length: 729 bp
ATGCATAACCTATGTGAGATATTTGAGCATCGAGAGTTGAAGACCGCCCAGCGCGGTCTCCCTCTCGACGCCCTTTGTATTTTACTTGACAGACAGCGGAAGCATTTAGAGCATCACAAATATCGATCCGCCCACCGGATCAACATTAACAAAGGTTCAGCTACCGCCGAACTTTTAGACGTTCCAGATGTAACTAGTGACCATGAAATTCGGAGGGAGTCCGTAGGAAAAGAAGGGAATCCATATTCAAATTACCACCAAGAAAAGGCACAGAATTGCCTACTTGAGCAGCACGGTAATCCGGTGGCGGAGCTATGGTGGTGGTCCACGAAGCAGCACTTTGGGGTTTCGAACCGGAAGTTGGAGAACGGAGAAGCACAGTTCGGCGCCTCCGGCGATAGTGCACATGCGATCCTCTCGAATGTTGGGTTGGCGCAAGACTGCGATGCAAATTCCAGGTCCAACCTCCGAATTTTTCGTTGCTTTCCAATGTTGACTTCAAGAGACATAAATAACCTTTCCCTTAGAAGATCGGTGGCTGGATTGTATCAATCAAGCAATTCATTGGAGGAGAAAATCGACGAGTCGAAGTCGAAGTTGGGGGAAGAGCATGGTGACCGACGAAGTTCACCGAATCGAAGTCAAACTTCGGTGTCAAAGCTTCGAATCCATTGCCGGAGACTAAAGCTTGGGATTATCAAAACCTGCAACCGCAGATTCGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.64

Weight (kDa)

9.23

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 386
AccII CGCG 1 cut(s) 54
AciI CCGC 7 cut(s) 45, 54, 97, 129, 165, 308, 712
AclWI GGATC 3 cut(s) 120, 146, 406
AcsI RAATTY 3 cut(s) 207, 451, 471
AcyI GRCGYC 2 cut(s) 69, 387
AfiI CCNNNNNNNGG 3 cut(s) 135, 265, 361
AgsI TTSAA 3 cut(s) 40, 249, 501
AhlI ACTAGT 1 cut(s) 194
AjnI CCWGG 1 cut(s) 455
AjuI GAANNNNNNNTTGG 8 cut(s) 344, 376, 413, 445, 481, 513, 581, 613
AluBI AGCT 4 cut(s) 161, 313, 661, 688
AluI AGCT 4 cut(s) 161, 313, 661, 688
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 3 cut(s) 62, 498, 673
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 3 cut(s) 120, 146, 406
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 2 cut(s) 289, 334
ApoI RAATTY 3 cut(s) 207, 451, 471
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspLEI GCGC 3 cut(s) 54, 389, 436
AspS9I GGNCC 2 cut(s) 324, 459
AsuHPI GGTGA 2 cut(s) 621, 626
AsuII TTCGAA 2 cut(s) 350, 664
AvaII GGWCC 2 cut(s) 324, 459
BaeGI GKGCMC 1 cut(s) 406
BanI GGYRCC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 301, 346
BcgI CGANNNNNNTGC 2 cut(s) 654, 688
BciT130I CCWGG 1 cut(s) 457
BcoDI GTCTC 3 cut(s) 62, 498, 673
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 390
BfuAI ACCTGC 1 cut(s) 713
BisI GCNGC 2 cut(s) 290, 335
BlsI GCNGC 2 cut(s) 291, 336
Bme1390I CCNGG 1 cut(s) 457
Bme18I GGWCC 2 cut(s) 324, 459
BmgT120I GGNCC 2 cut(s) 324, 459
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 457
BmsI GCATC 3 cut(s) 37, 121, 436
BpiI GAAGAC 1 cut(s) 47
Bpu14I TTCGAA 2 cut(s) 350, 664
BpuEI CTTGAG 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 124
BsaHI GRCGYC 2 cut(s) 69, 387
BsaI GGTCTC 1 cut(s) 62
BsaWI WCCGGW 3 cut(s) 135, 301, 354
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 265, 361
Bse3DI GCAATG 1 cut(s) 670
BseBI CCWGG 1 cut(s) 457
BseCI ATCGAT 1 cut(s) 124
BseLI CCNNNNNNNGG 3 cut(s) 135, 265, 361
BseMI GCAATG 1 cut(s) 670
BseRI GAGGAG 1 cut(s) 584
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 2 cut(s) 301, 346
BseYI CCCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 386
BshVI ATCGAT 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 5 cut(s) 136, 302, 355, 393, 676
BslI CCNNNNNNNGG 3 cut(s) 135, 265, 361
BsmAI GTCTC 3 cut(s) 62, 498, 673
Bso31I GGTCTC 1 cut(s) 62
Bsp119I TTCGAA 2 cut(s) 350, 664
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 4 cut(s) 125, 138, 411, 530
BspACI CCGC 7 cut(s) 45, 54, 97, 129, 165, 308, 712
BspDI ATCGAT 1 cut(s) 124
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 713
BspPI GGATC 3 cut(s) 120, 146, 406
BspQI GCTCTTC 1 cut(s) 600
BspT104I TTCGAA 2 cut(s) 350, 664
BspT107I GGYRCC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 670
BssMI GATC 4 cut(s) 125, 138, 411, 530
BssNI GRCGYC 2 cut(s) 69, 387
Bst2UI CCWGG 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 296, 381
Bst6I CTCTTC 1 cut(s) 600
BstACI GRCGYC 2 cut(s) 69, 387
BstBI TTCGAA 2 cut(s) 350, 664
BstDEI CTNAG 1 cut(s) 524
BstEII GGTNACC 1 cut(s) 614
BstFNI CGCG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 3 cut(s) 54, 389, 436
BstKTI GATC 4 cut(s) 128, 141, 414, 533
BstMAI GTCTC 3 cut(s) 62, 498, 673
BstMBI GATC 4 cut(s) 125, 138, 411, 530
BstMWI GCNNNNNNNGC 2 cut(s) 109, 393
BstNI CCWGG 1 cut(s) 457
BstNSI RCATGY 1 cut(s) 410
BstPI GGTNACC 1 cut(s) 614
BstSCI CCNGG 1 cut(s) 455
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 301, 346
BstV2I GAAGAC 1 cut(s) 47
Bsu15I ATCGAT 1 cut(s) 124
BsuTUI ATCGAT 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 459
BveI ACCTGC 1 cut(s) 713
CfoI GCGC 3 cut(s) 54, 389, 436
Cfr13I GGNCC 2 cut(s) 324, 459
ClaI ATCGAT 1 cut(s) 124
CseI GACGC 1 cut(s) 77
CviAII CATG 3 cut(s) 203, 407, 611
CviJI RGCY 5 cut(s) 161, 313, 539, 661, 688
CviKI_1 RGCY 5 cut(s) 161, 313, 539, 661, 688
DdeI CTNAG 1 cut(s) 524
DinI GGCGCC 1 cut(s) 388
DpnI GATC 4 cut(s) 127, 140, 413, 532
DpnII GATC 4 cut(s) 125, 138, 411, 530
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 2 cut(s) 118, 323
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 324, 459
Eco91I GGTNACC 1 cut(s) 614
EcoO65I GGTNACC 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 455
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 388
EheI GGCGCC 1 cut(s) 388
FaeI CATG 3 cut(s) 206, 410, 614
FaiI YATR 8 cut(s) 6, 13, 204, 244, 316, 408, 509, 612
FalI AAGNNNNNCTT 4 cut(s) 323, 355, 631, 663
FatI CATG 3 cut(s) 202, 406, 610
Fnu4HI GCNGC 2 cut(s) 290, 335
Fsp4HI GCNGC 2 cut(s) 290, 335
FspBI CTAG 1 cut(s) 195
GlaI GCGC 3 cut(s) 53, 388, 435
GluI GCNGC 2 cut(s) 290, 335
GsaI CCCAGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 390
HapII CCGG 5 cut(s) 136, 302, 355, 393, 676
HgaI GACGC 1 cut(s) 77
HhaI GCGC 3 cut(s) 54, 389, 436
Hin1I GRCGYC 2 cut(s) 69, 387
Hin1II CATG 3 cut(s) 206, 410, 614
Hin6I GCGC 3 cut(s) 52, 387, 434
HinP1I GCGC 3 cut(s) 52, 387, 434
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HindIII AAGCTT 2 cut(s) 659, 686
HinfI GANTC 6 cut(s) 218, 238, 584, 634, 666, 717
HpaII CCGG 5 cut(s) 136, 302, 355, 393, 676
HphI GGTGA 2 cut(s) 621, 626
Hpy166II GTNNAC 4 cut(s) 327, 404, 495, 629
Hpy188I TCNGA 2 cut(s) 213, 470
Hpy188III TCNNGA 5 cut(s) 32, 65, 185, 418, 501
Hpy8I GTNNAC 4 cut(s) 327, 404, 495, 629
Hpy99I CGWCG 3 cut(s) 71, 584, 624
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 296, 381
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 4, 404, 449, 708
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 393
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 2 cut(s) 69, 387
Hsp92II CATG 3 cut(s) 206, 410, 614
HspAI GCGC 3 cut(s) 52, 387, 434
KasI GGCGCC 1 cut(s) 386
Kzo9I GATC 4 cut(s) 125, 138, 411, 530
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 2 cut(s) 301, 346
LweI GCATC 3 cut(s) 37, 121, 436
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 3 cut(s) 190, 197, 614
MalI GATC 4 cut(s) 127, 140, 413, 532
MboI GATC 4 cut(s) 125, 138, 411, 530
MboII GAAGA 3 cut(s) 52, 540, 617
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 6 cut(s) 207, 250, 274, 451, 471, 559
Mly113I GGCGCC 1 cut(s) 387
MlyI GAGTC 2 cut(s) 227, 593
MmeI TCCRAC 2 cut(s) 342, 486
MnlI CCTC 6 cut(s) 72, 207, 400, 425, 476, 562
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 5 cut(s) 136, 302, 355, 393, 676
MspR9I CCNGG 1 cut(s) 457
MvaI CCWGG 1 cut(s) 457
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 109, 393
NarI GGCGCC 1 cut(s) 387
NdeII GATC 4 cut(s) 125, 138, 411, 530
NlaIII CATG 3 cut(s) 206, 410, 614
NlaIV GGNNCC 1 cut(s) 388
NmuCI GTSAC 2 cut(s) 197, 614
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 410
NspV TTCGAA 2 cut(s) 350, 664
PciSI GCTCTTC 1 cut(s) 600
PfeI GAWTC 4 cut(s) 238, 634, 666, 717
PkrI GCNGC 2 cut(s) 291, 336
PleI GAGTC 2 cut(s) 226, 592
PluTI GGCGCC 1 cut(s) 390
PpsI GAGTC 2 cut(s) 226, 592
Psp6I CCWGG 1 cut(s) 455
PspEI GGTNACC 1 cut(s) 614
PspFI CCCAGC 1 cut(s) 48
PspGI CCWGG 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 2 cut(s) 324, 459
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 2 cut(s) 290, 335
Sau3AI GATC 4 cut(s) 125, 138, 411, 530
Sau96I GGNCC 2 cut(s) 324, 459
SchI GAGTC 2 cut(s) 227, 593
ScrFI CCNGG 1 cut(s) 457
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 3 cut(s) 37, 121, 436
SfoI GGCGCC 1 cut(s) 388
SfuI TTCGAA 2 cut(s) 350, 664
SinI GGWCC 2 cut(s) 324, 459
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SpeI ACTAGT 1 cut(s) 194
Sse9I AATT 6 cut(s) 207, 250, 274, 451, 471, 559
SsiI CCGC 7 cut(s) 45, 54, 97, 129, 165, 308, 712
SspDI GGCGCC 1 cut(s) 386
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 455
TaaI ACNGT 2 cut(s) 296, 381
TaiI ACGT 1 cut(s) 183
TaqII GACCGA 1 cut(s) 633
TasI AATT 6 cut(s) 207, 250, 274, 451, 471, 559
TfiI GAWTC 4 cut(s) 238, 634, 666, 717
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseFI GTSAC 2 cut(s) 197, 614
TseI GCWGC 2 cut(s) 289, 334
Tsp45I GTSAC 2 cut(s) 197, 614
TspDTI ATGAA 2 cut(s) 219, 552
TspGWI ACGGA 2 cut(s) 211, 384
VneI GTGCAC 1 cut(s) 402
VpaK11BI GGWCC 2 cut(s) 324, 459
XapI RAATTY 3 cut(s) 207, 451, 471
XceI RCATGY 1 cut(s) 410
XspI CTAG 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.