Rorug05G0153000

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017812
Physical Location & Seq
Reverse (-)
14211046 .. 14212844
1799 bp
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UTR
Exon/CDS
Intron
Rorug05G0153000.1

Sequence Viewer

Length: 642 bp
ATGAGCTTGATCTTAAGACTAAGGAATCATTTACCTAATGGGCTTTGCAGAAGACTCTTTATTTCTCCCCTCGGAGCACTGAATCCGGGTAGCTTAAATGGGTTTTACCAGAACTTTAGTCAACCTGCAAGGAAAGAAGAGGAGGAGGAAGAAGTGGAGATTGATCAAAGGAGACTCCCAGCTGATTACGATCCGGCAACTTTTGATCCTACAGAGCATCGGAGTCCTCCCACAGAGCGTGTATTCAGGCTTGTAGATGAAATATCATCACTCACACTGGCTGAAGTTGCTGAGCTGGGTTCGATCATTATGAAGAAAAAGGGACTGAAGGTACCACCAACTGTGGGGGTCATGAAGCCAGGAGCTGCTGCAATAGGATTGGCAATGAAGGGACCAGCAGCAGCTAAGGAGGAAAAGAAAGTAGAAAAGACTGTATTTGAATTAAAGTTAGAGTCCTTTGAGGCGGCTTCAAAAATAAAACTGATCAAGGAGGTGAGGAGCTTCACTGATTTGGGCCTCAAGGAAGCAAAGGATTTAGTGGAGAAGGCACCATCCGTGTTAAAGGCCGGCGTGTCAAAGGAGGAAGGAGAACAACTTGTAGAGAAGCTGAAAGCTCTTGGAGCGAAAGTTGTTCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR Complex1_LYR_2

Protein Analysis

213

Amino Acids

23.41

Weight (kDa)

7.76

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 146 - 212 9.5e-22 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
Acc65I GGTACC 1 cut(s) 331
AccB1I GGYRCC 2 cut(s) 331, 547
AciI CCGC 1 cut(s) 464
AclWI GGATC 2 cut(s) 185, 200
AcuI CTGAAG 2 cut(s) 303, 347
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 344
AflII CTTAAG 1 cut(s) 13
AgsI TTSAA 2 cut(s) 440, 471
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 9 cut(s) 6, 93, 182, 295, 365, 404, 501, 607, 614
AluI AGCT 9 cut(s) 6, 93, 182, 295, 365, 404, 501, 607, 614
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 2 cut(s) 185, 200
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 2 cut(s) 514, 564
ApeKI GCWGC 4 cut(s) 365, 368, 398, 401
Asp718I GGTACC 1 cut(s) 331
AspS9I GGNCC 2 cut(s) 392, 514
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 392
BanI GGYRCC 2 cut(s) 331, 547
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 4 cut(s) 352, 355, 410, 413
BccI CCATC 1 cut(s) 559
BciT130I CCWGG 1 cut(s) 360
BclI TGATCA 2 cut(s) 163, 483
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 13
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 5 cut(s) 366, 369, 399, 402, 465
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 5 cut(s) 367, 370, 400, 403, 466
Bme1390I CCNGG 2 cut(s) 87, 360
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 392, 514
BmiI GGNNCC 3 cut(s) 333, 393, 549
BmrFI CCNGG 2 cut(s) 87, 360
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 551
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 3 cut(s) 155, 158, 511
BseXI GCAGC 4 cut(s) 352, 355, 410, 413
BseYI CCCAGC 2 cut(s) 178, 295
BshFI GGCC 2 cut(s) 516, 566
BshNI GGYRCC 2 cut(s) 331, 547
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 3 cut(s) 86, 194, 567
BslFI GGGAC 2 cut(s) 336, 405
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 2 cut(s) 336, 405
BsnI GGCC 2 cut(s) 516, 566
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 6 cut(s) 9, 163, 190, 205, 303, 483
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 1 cut(s) 464
BspANI GGCC 2 cut(s) 516, 566
BspCNI CTCAG 1 cut(s) 283
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 3 cut(s) 333, 393, 549
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 2 cut(s) 185, 200
BspT107I GGYRCC 2 cut(s) 331, 547
BspTI CTTAAG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 6 cut(s) 9, 163, 190, 205, 303, 483
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 343, 433
Bst6I CTCTTC 1 cut(s) 132
BstAFI CTTAAG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 568
BstDEI CTNAG 3 cut(s) 20, 291, 405
BstF5I GGATG 1 cut(s) 551
BstKTI GATC 6 cut(s) 12, 166, 193, 208, 306, 486
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 6 cut(s) 9, 163, 190, 205, 303, 483
BstMWI GCNNNNNNNGC 2 cut(s) 287, 620
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 85, 358
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 4 cut(s) 352, 355, 410, 413
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 516, 566
BtsCI GGATG 1 cut(s) 551
BtsIMutI CAGTG 3 cut(s) 77, 275, 504
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 568
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 2 cut(s) 392, 514
Csp6I GTAC 1 cut(s) 332
CviAII CATG 1 cut(s) 352
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 3 cut(s) 20, 291, 405
DpnI GATC 6 cut(s) 11, 165, 192, 207, 305, 485
DpnII GATC 6 cut(s) 9, 163, 190, 205, 303, 483
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 2 cut(s) 303, 347
EcoRII CCWGG 1 cut(s) 358
FaeI CATG 1 cut(s) 355
FaiI YATR 2 cut(s) 311, 353
FalI AAGNNNNNCTT 1 cut(s) 618
FaqI GGGAC 2 cut(s) 336, 405
FatI CATG 1 cut(s) 351
FbaI TGATCA 2 cut(s) 163, 483
Fnu4HI GCNGC 5 cut(s) 366, 369, 399, 402, 465
FokI GGATG 1 cut(s) 538
Fsp4HI GCNGC 5 cut(s) 366, 369, 399, 402, 465
GluI GCNGC 5 cut(s) 366, 369, 399, 402, 465
GsaI CCCAGC 2 cut(s) 182, 299
HaeIII GGCC 2 cut(s) 516, 566
HapII CCGG 3 cut(s) 86, 194, 567
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HinfI GANTC 6 cut(s) 25, 54, 82, 174, 223, 452
HpaII CCGG 3 cut(s) 86, 194, 567
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 2 cut(s) 74, 222
Hpy188III TCNNGA 2 cut(s) 352, 635
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 4 cut(s) 322, 382, 538, 578
HpyCH4III ACNGT 2 cut(s) 343, 433
HpyCH4V TGCA 3 cut(s) 48, 128, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 620
HpyF3I CTNAG 3 cut(s) 20, 291, 405
Hsp92II CATG 1 cut(s) 355
KpnI GGTACC 1 cut(s) 335
KroI GCCGGC 1 cut(s) 566
KroNI GCCGGC 1 cut(s) 568
Ksp22I TGATCA 2 cut(s) 163, 483
Kzo9I GATC 6 cut(s) 9, 163, 190, 205, 303, 483
LmnI GCTCC 4 cut(s) 74, 362, 498, 620
Lsp1109I GCAGC 4 cut(s) 352, 355, 410, 413
LweI GCATC 1 cut(s) 226
MalI GATC 6 cut(s) 11, 165, 192, 207, 305, 485
MboI GATC 6 cut(s) 9, 163, 190, 205, 303, 483
MboII GAAGA 4 cut(s) 63, 149, 161, 325
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 440
MlyI GAGTC 4 cut(s) 48, 168, 232, 461
MroNI GCCGGC 1 cut(s) 566
MseI TTAA 4 cut(s) 14, 95, 443, 560
MspA1I CMGCKG 1 cut(s) 182
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 3 cut(s) 86, 194, 567
MspR9I CCNGG 2 cut(s) 87, 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 287, 620
NaeI GCCGGC 1 cut(s) 568
NciI CCSGG 1 cut(s) 87
NdeII GATC 6 cut(s) 9, 163, 190, 205, 303, 483
NgoMIV GCCGGC 1 cut(s) 566
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 3 cut(s) 333, 393, 549
PagI TCATGA 1 cut(s) 351
PdiI GCCGGC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 25, 82
PkrI GCNGC 5 cut(s) 367, 370, 400, 403, 466
PleI GAGTC 4 cut(s) 48, 168, 231, 460
PpsI GAGTC 4 cut(s) 48, 168, 231, 460
Psp6I CCWGG 1 cut(s) 358
PspFI CCCAGC 2 cut(s) 178, 295
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 3 cut(s) 333, 393, 549
PspPI GGNCC 2 cut(s) 392, 514
PstNI CAGNNNCTG 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SaqAI TTAA 4 cut(s) 14, 95, 443, 560
SatI GCNGC 5 cut(s) 366, 369, 399, 402, 465
Sau3AI GATC 6 cut(s) 9, 163, 190, 205, 303, 483
Sau96I GGNCC 2 cut(s) 392, 514
SchI GAGTC 4 cut(s) 48, 168, 232, 461
ScrFI CCNGG 2 cut(s) 87, 360
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 3 cut(s) 13, 518, 635
SmoI CTYRAG 3 cut(s) 13, 518, 635
Sse9I AATT 1 cut(s) 440
SsiI CCGC 1 cut(s) 464
StyD4I CCNGG 2 cut(s) 85, 358
TaaI ACNGT 2 cut(s) 343, 433
TaqI TCGA 1 cut(s) 302
TasI AATT 1 cut(s) 440
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 2 cut(s) 25, 82
Tru1I TTAA 4 cut(s) 14, 95, 443, 560
Tru9I TTAA 4 cut(s) 14, 95, 443, 560
TscAI CASTG 3 cut(s) 84, 282, 511
TseI GCWGC 4 cut(s) 365, 368, 398, 401
TspDTI ATGAA 4 cut(s) 273, 326, 368, 401
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 3 cut(s) 84, 282, 511
Vha464I CTTAAG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.