Rroxscaffold_3G00223880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017812
Physical Location & Seq
Reverse (-)
6978248 .. 6989536
11289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223880.1

Sequence Viewer

Length: 411 bp
ATGGACGCCGTGGTAGTTGGTGGCGCCGATGAAGTAAGACATGATGACTTTGATGGGGTTCAATCTGGATGGTCCACTTATGGTAGACCAGCTCATATGGAGATTTTAATAATGGCTAAACACAAAGACGTGTTGCTTTTCATATATCTATTTCAAGGATTAGCTGGAGACGACGAAGAAGGATTGACAAATAAACGATTGGCTTTTCGTATTTCGGGTCCGAGGAAACTTGATAAACTCGGAGGAAGAGTTTTTTTAAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAACATCTCTACAACAAGGTTCCGTATGCAACTAGTGACCATGAAATTCGGAGGGAGTCTATAGGAGAAGAAGGGAATCCAGATTCAAGCAGTGATAGAGCAATGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.3

Weight (kDa)

5.95

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 85
AcsI RAATTY 1 cut(s) 345
AcyI GRCGYC 2 cut(s) 6, 24
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 3 cut(s) 62, 155, 387
AhlI ACTAGT 1 cut(s) 332
AjiI CACGTC 1 cut(s) 130
AluBI AGCT 2 cut(s) 92, 164
AluI AGCT 2 cut(s) 92, 164
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 345
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 72, 218
AvaII GGWCC 2 cut(s) 72, 218
BanI GGYRCC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 274
BccI CCATC 2 cut(s) 47, 63
BcoDI GTCTC 1 cut(s) 162
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 27
Bme18I GGWCC 2 cut(s) 72, 218
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 72, 218
BmiI GGNNCC 3 cut(s) 25, 219, 321
BpmI CTGGAG 1 cut(s) 186
BsaHI GRCGYC 2 cut(s) 6, 24
BsaJI CCNNGG 2 cut(s) 9, 221
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bse3DI GCAATG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 9, 221
BseGI GGATG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 408
BseRI GAGGAG 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 162
BsmBI CGTCTC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 25, 219, 321
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 408
BssECI CCNNGG 2 cut(s) 9, 221
BssNI GRCGYC 2 cut(s) 6, 24
Bst6I CTCTTC 1 cut(s) 241
BstACI GRCGYC 2 cut(s) 6, 24
BstDEI CTNAG 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 9
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 397
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 72, 218
CseI GACGC 1 cut(s) 14
CviAII CATG 2 cut(s) 41, 341
CviJI RGCY 6 cut(s) 92, 116, 164, 203, 281, 408
CviKI_1 RGCY 6 cut(s) 92, 116, 164, 203, 281, 408
DdeI CTNAG 1 cut(s) 275
DinI GGCGCC 1 cut(s) 25
DraI TTTAAA 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 72, 218
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 2 cut(s) 44, 344
FatI CATG 2 cut(s) 40, 340
FauNDI CATATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 85
FokI GGATG 1 cut(s) 81
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 27
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 2 cut(s) 6, 24
Hin1II CATG 2 cut(s) 44, 344
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 3 cut(s) 356, 376, 383
Hpy166II GTNNAC 2 cut(s) 75, 86
Hpy188I TCNGA 3 cut(s) 222, 242, 351
Hpy188III TCNNGA 2 cut(s) 66, 380
Hpy8I GTNNAC 2 cut(s) 75, 86
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 173, 365
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 2 cut(s) 6, 24
Hsp92II CATG 2 cut(s) 44, 344
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 4 cut(s) 51, 102, 150, 393
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 335
MboII GAAGA 4 cut(s) 188, 258, 302, 380
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 2 cut(s) 293, 345
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 4 cut(s) 216, 236, 260, 345
MseI TTAA 2 cut(s) 107, 257
MwoI GCNNNNNNNGC 1 cut(s) 278
NarI GGCGCC 1 cut(s) 24
NdeI CATATG 1 cut(s) 96
NlaIII CATG 2 cut(s) 44, 344
NlaIV GGNNCC 3 cut(s) 25, 219, 321
NmuCI GTSAC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 376, 383
PleI GAGTC 1 cut(s) 364
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 364
PspN4I GGNNCC 3 cut(s) 25, 219, 321
PspPI GGNCC 2 cut(s) 72, 218
SaqAI TTAA 2 cut(s) 107, 257
Sau96I GGNCC 2 cut(s) 72, 218
SchI GAGTC 1 cut(s) 365
SduI GDGCHC 1 cut(s) 274
SetI ASST 4 cut(s) 94, 132, 166, 321
SfcI CTRYAG 1 cut(s) 360
SfoI GGCGCC 1 cut(s) 25
SinI GGWCC 2 cut(s) 72, 218
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 2 cut(s) 293, 345
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 333
TaiI ACGT 1 cut(s) 132
TasI AATT 2 cut(s) 293, 345
TfiI GAWTC 2 cut(s) 376, 383
Tru1I TTAA 2 cut(s) 107, 257
Tru9I TTAA 2 cut(s) 107, 257
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 5 cut(s) 45, 130, 303, 315, 357
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 2 cut(s) 72, 218
XapI RAATTY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.