RchiOBHm_Chr5g0008161

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018131
Physical Location & Seq
Forward (+)
5215882 .. 5221862
5981 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28915

Sequence Viewer

Length: 576 bp
ATGCTATCCTTACAGAATTTGAGATCCCTTTCTCTTGATTCTTGGGATGAACGCGAATTGTTGCCTCCTCTTGGGAAATTGCCGTTCCTTGAAGAACTATCAGTATCCTATATGGAGAAAGTGAAGACGGTTGGAGATGAATTTTTAGGAATAACGGGTACTCAAACATCATCATCATCATCATCATCATCCTCTGTTTTATTCCCAAAATTGAAACAACTCACCTTTCACGGCATGTGGGAGTGGAAACAGTGGGAAGGAGTTGGAGGGCGGACAGAAAACGGTGGTGATGAAATTACAATTATGCCATGCCTTGTTTCCCTCAGAATCGAGTACTGCCGTCAGCTGATGAACCTGCCACTCTTCCTGCAAAAGACGCCGGTCAGGAATGTTGAAATCAGAAAATGTCGTCGGAGTATTAGAATGCCTGTCTGGCCCGAGAACTGTGAGGTCGAAATTTTTCAAGATGAGGAGGATCCGGTAATACCGGATGTTTCTGAGAGTGATGAAACAGAGATAGAGAGCGATGAGGAGATCACCACAACTTCGTGTGGATGGAAAGCTTTGTGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

191

Amino Acids

21.75

Weight (kDa)

4.57

Isoelectric Point (pI)

71.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 363
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 271
AclWI GGATC 3 cut(s) 18, 470, 483
AcsI RAATTY 3 cut(s) 16, 140, 456
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 2 cut(s) 160, 335
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 4 cut(s) 92, 214, 395, 464
AluBI AGCT 2 cut(s) 346, 563
AluI AGCT 2 cut(s) 346, 563
AlwI GGATC 3 cut(s) 18, 470, 483
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 1 cut(s) 434
ApoI RAATTY 3 cut(s) 16, 140, 456
Asp700I GAANNNNTTC 1 cut(s) 459
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 3 cut(s) 214, 299, 529
AvaI CYCGRG 1 cut(s) 437
BamHI GGATCC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 131
BccI CCATC 1 cut(s) 549
BceAI ACGGC 3 cut(s) 67, 247, 324
BciVI GTATCC 1 cut(s) 115
BfuAI ACCTGC 1 cut(s) 363
BfuI GTATCC 1 cut(s) 115
BglI GCCNNNNNGGC 1 cut(s) 433
BmcAI AGTACT 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 477
BoxI GACNNNNGTC 1 cut(s) 380
BpiI GAAGAC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 377
BsaWI WCCGGW 2 cut(s) 478, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 379
BseGI GGATG 4 cut(s) 52, 188, 496, 560
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 2 cut(s) 337, 489
BseRI GAGGAG 3 cut(s) 57, 485, 545
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 436
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 3 cut(s) 380, 479, 488
BslI CCNNNNNNNGG 1 cut(s) 71
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 1 cut(s) 436
BsoBI CYCGRG 1 cut(s) 437
Bsp143I GATC 3 cut(s) 23, 475, 534
BspACI CCGC 1 cut(s) 271
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 2 cut(s) 336, 490
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 363
BspPI GGATC 3 cut(s) 18, 470, 483
BsrFI RCCGGY 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 379
BssMI GATC 3 cut(s) 23, 475, 534
BssNI GRCGYC 1 cut(s) 377
Bst4CI ACNGT 4 cut(s) 130, 252, 284, 446
Bst6I CTCTTC 1 cut(s) 368
BstACI GRCGYC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 323, 498
BstF5I GGATG 4 cut(s) 52, 188, 496, 560
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 3 cut(s) 26, 478, 537
BstMBI GATC 3 cut(s) 23, 475, 534
BstMWI GCNNNNNNNGC 2 cut(s) 376, 433
BstNSI RCATGY 1 cut(s) 238
BstPAI GACNNNNGTC 1 cut(s) 380
BstUI CGCG 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 2 cut(s) 23, 475
BstYI RGATCY 2 cut(s) 23, 475
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 436
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 4 cut(s) 52, 188, 496, 560
BtsIMutI CAGTG 1 cut(s) 257
BveI ACCTGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 435
CseI GACGC 1 cut(s) 385
Csp6I GTAC 2 cut(s) 159, 334
CviAII CATG 2 cut(s) 235, 309
CviJI RGCY 3 cut(s) 346, 436, 563
CviKI_1 RGCY 3 cut(s) 346, 436, 563
CviQI GTAC 2 cut(s) 159, 334
DdeI CTNAG 2 cut(s) 323, 498
DpnI GATC 3 cut(s) 25, 477, 536
DpnII GATC 3 cut(s) 23, 475, 534
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
EciI GGCGGA 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 437
FaeI CATG 2 cut(s) 238, 312
FaiI YATR 5 cut(s) 111, 113, 236, 305, 310
FatI CATG 2 cut(s) 234, 308
FokI GGATG 4 cut(s) 59, 175, 503, 567
HaeIII GGCC 1 cut(s) 436
HapII CCGG 3 cut(s) 380, 479, 488
HgaI GACGC 1 cut(s) 385
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 2 cut(s) 238, 312
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 2 cut(s) 38, 327
HpaII CCGG 3 cut(s) 380, 479, 488
HphI GGTGA 3 cut(s) 214, 299, 529
Hpy188I TCNGA 4 cut(s) 326, 401, 414, 499
Hpy188III TCNNGA 3 cut(s) 35, 385, 464
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 4 cut(s) 130, 252, 284, 446
HpyCH4V TGCA 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 433
HpyF3I CTNAG 2 cut(s) 323, 498
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 2 cut(s) 238, 312
Kzo9I GATC 3 cut(s) 23, 475, 534
LpnPI CCDG 8 cut(s) 368, 370, 380, 393, 418, 441, 492, 501
MalI GATC 3 cut(s) 25, 477, 536
MboI GATC 3 cut(s) 23, 475, 534
MboII GAAGA 3 cut(s) 104, 136, 355
MflI RGATCY 2 cut(s) 23, 475
MluCI AATT 8 cut(s) 16, 56, 77, 140, 209, 294, 300, 456
MmeI TCCRAC 3 cut(s) 112, 244, 392
MnlI CCTC 9 cut(s) 75, 78, 202, 260, 332, 442, 463, 466, 523
MroXI GAANNNNTTC 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 3 cut(s) 380, 479, 488
Mva1269I GAATGC 1 cut(s) 429
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 376, 433
NdeII GATC 3 cut(s) 23, 475, 534
NlaIII CATG 2 cut(s) 238, 312
NlaIV GGNNCC 1 cut(s) 477
NspI RCATGY 1 cut(s) 238
PctI GAATGC 1 cut(s) 429
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 2 cut(s) 38, 327
PshAI GACNNNNGTC 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 435
PsuI RGATCY 2 cut(s) 23, 475
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 2 cut(s) 160, 335
RsaNI GTAC 2 cut(s) 159, 334
Sau3AI GATC 3 cut(s) 23, 475, 534
Sau96I GGNCC 1 cut(s) 435
ScaI AGTACT 1 cut(s) 335
SetI ASST 5 cut(s) 227, 348, 357, 453, 565
Sse9I AATT 8 cut(s) 16, 56, 77, 140, 209, 294, 300, 456
SsiI CCGC 1 cut(s) 271
TaaI ACNGT 4 cut(s) 130, 252, 284, 446
TaqI TCGA 2 cut(s) 330, 453
TasI AATT 8 cut(s) 16, 56, 77, 140, 209, 294, 300, 456
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 2 cut(s) 38, 327
TscAI CASTG 1 cut(s) 257
TspDTI ATGAA 5 cut(s) 63, 153, 306, 365, 522
TspRI CASTG 1 cut(s) 257
XapI RAATTY 3 cut(s) 16, 140, 456
XceI RCATGY 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 459
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.