Rorug07G0254100

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0018131
Physical Location & Seq
Forward (+)
23645378 .. 23646631
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0254100.1

Sequence Viewer

Length: 774 bp
ATGGGGTTTGTTAGAGCGCGGTTTACGTGGTCTAATCGCTTCACCAAGGAGAGACTTGATCGAGCTTGCCAGACAGTGCAATGGAGAGAATTGTATCATTTCTCTAGAGTTATCATCCTCCCTTTTAGTCAATCTGACCATTGCCCTATTTTGAGATTAATCCGGAACCAACTCCAATGCATCAAAGACCTAGATCTTTTCGATTTAAGGAGATGTGGCTGCCACACCTTGATTGTGCTAAGACTTACTAGAGACAATTTTCTAGACTTCAATGGTCGAAAGAAGGAGATCAAAACACAGCCTTCTTTCATAGACAAGCTTCGAATTGTAGAGTATTATGAGTCGATCTTTCAAGCTAGTAGGTCTGATCCTGCAGCTCTTAACACTGTCCTTGATTGCCTGCAACCTTGGGTTTTTGCAGAAATGAATTCGGACCTCACTGCCCCATACTCTGATGCTGAAATAAAGAAGGCTTTATTCCAAATGCATCCATCTAAAGCACCGGGTCCAGACGGTATGTCCCTTTGTTTTTTCCAAAATTTTTGGAATGTGGTAGAAAAGGATGTTTGCCTTGCAGTCCGAGAGGCTCAAGTCCATTCTTCCCCACATCATCTCCCCATTACAGAGCGCCTTCGTACCAGTCGACTTATCTCGGACAACACCTTGGTAGCTATAGAAATAGCCAACTTTATGAAGAAGCTCTATAGCCAGGGTGAGGGTTTCTTCTCCTTAAAGATGGATATTTCCAAAGCTTATGATCGGTTGGAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

257

Amino Acids

30.01

Weight (kDa)

8.76

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 643
AccII CGCG 1 cut(s) 19
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 1 cut(s) 19
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 2 cut(s) 427, 538
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 1 cut(s) 715
AgsI TTSAA 2 cut(s) 271, 353
AhdI GACNNNNNGTC 1 cut(s) 517
AjnI CCWGG 1 cut(s) 708
AluBI AGCT 7 cut(s) 65, 319, 356, 377, 671, 700, 752
AluI AGCT 7 cut(s) 65, 319, 356, 377, 671, 700, 752
Alw26I GTCTC 2 cut(s) 46, 246
AlwI GGATC 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 219, 374
ApoI RAATTY 2 cut(s) 427, 538
AseI ATTAAT 1 cut(s) 158
AspLEI GCGC 2 cut(s) 19, 630
AspS9I GGNCC 2 cut(s) 433, 506
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 2 cut(s) 34, 725
AsuII TTCGAA 1 cut(s) 322
AvaII GGWCC 2 cut(s) 433, 506
BbvI GCAGC 2 cut(s) 206, 386
BccI CCATC 2 cut(s) 499, 730
BciT130I CCWGG 1 cut(s) 710
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 46, 246
BfaI CTAG 5 cut(s) 105, 191, 249, 263, 357
BfmI CTRYAG 3 cut(s) 372, 672, 703
BfoI RGCGCY 1 cut(s) 631
BglII AGATCT 1 cut(s) 193
BisI GCNGC 2 cut(s) 220, 375
BlsI GCNGC 2 cut(s) 221, 376
Bme1390I CCNGG 2 cut(s) 504, 710
Bme18I GGWCC 2 cut(s) 433, 506
BmeRI GACNNNNNGTC 1 cut(s) 517
BmgT120I GGNCC 2 cut(s) 433, 506
BmiI GGNNCC 2 cut(s) 167, 507
BmrFI CCNGG 2 cut(s) 504, 710
BmsI GCATC 3 cut(s) 189, 445, 496
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 504
BsaAI YACGTR 1 cut(s) 27
BsaJI CCNNGG 4 cut(s) 45, 407, 663, 709
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 715
Bse1I ACTGG 1 cut(s) 639
Bse3DI GCAATG 2 cut(s) 86, 139
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 4 cut(s) 45, 407, 663, 709
BseGI GGATG 3 cut(s) 114, 487, 568
BseLI CCNNNNNNNGG 1 cut(s) 715
BseMI GCAATG 2 cut(s) 86, 139
BseNI ACTGG 1 cut(s) 639
BseXI GCAGC 2 cut(s) 206, 386
Bsh1236I CGCG 1 cut(s) 19
BsiSI CCGG 2 cut(s) 163, 503
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 715
BsmAI GTCTC 2 cut(s) 46, 246
BsmFI GGGAC 1 cut(s) 505
Bsp119I TTCGAA 1 cut(s) 322
Bsp13I TCCGGA 1 cut(s) 162
Bsp143I GATC 6 cut(s) 58, 193, 288, 345, 367, 757
BspACI CCGC 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 167, 507
BspMAI CTGCAG 1 cut(s) 376
BspPI GGATC 1 cut(s) 362
BspT104I TTCGAA 1 cut(s) 322
BsrDI GCAATG 2 cut(s) 86, 139
BsrI ACTGG 1 cut(s) 639
BssECI CCNNGG 4 cut(s) 45, 407, 663, 709
BssMI GATC 6 cut(s) 58, 193, 288, 345, 367, 757
BssT1I CCWWGG 3 cut(s) 45, 407, 663
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 3 cut(s) 76, 388, 515
BstBAI YACGTR 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 322
BstC8I GCNNGC 2 cut(s) 67, 401
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 3 cut(s) 114, 487, 568
BstFNI CGCG 1 cut(s) 19
BstH2I RGCGCY 1 cut(s) 631
BstHHI GCGC 2 cut(s) 19, 630
BstKTI GATC 6 cut(s) 61, 196, 291, 348, 370, 760
BstMAI GTCTC 2 cut(s) 46, 246
BstMBI GATC 6 cut(s) 58, 193, 288, 345, 367, 757
BstNI CCWGG 1 cut(s) 710
BstSCI CCNGG 2 cut(s) 502, 708
BstSFI CTRYAG 3 cut(s) 372, 672, 703
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 2 cut(s) 206, 386
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 3 cut(s) 114, 487, 568
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 3 cut(s) 81, 384, 438
Cac8I GCNNGC 2 cut(s) 67, 401
CfoI GCGC 2 cut(s) 19, 630
Cfr13I GGNCC 2 cut(s) 433, 506
Csp6I GTAC 1 cut(s) 636
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 1 cut(s) 239
DpnI GATC 6 cut(s) 60, 195, 290, 347, 369, 759
DpnII GATC 6 cut(s) 58, 193, 288, 345, 367, 757
DriI GACNNNNNGTC 1 cut(s) 517
Eam1105I GACNNNNNGTC 1 cut(s) 517
Eco130I CCWWGG 3 cut(s) 45, 407, 663
Eco47I GGWCC 2 cut(s) 433, 506
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 3 cut(s) 45, 407, 663
EcoT22I ATGCAT 2 cut(s) 182, 489
ErhI CCWWGG 3 cut(s) 45, 407, 663
FaiI YATR 8 cut(s) 311, 339, 448, 518, 674, 692, 705, 756
FaqI GGGAC 1 cut(s) 505
FblI GTMKAC 1 cut(s) 643
Fnu4HI GCNGC 2 cut(s) 220, 375
FokI GGATG 3 cut(s) 101, 474, 575
Fsp4HI GCNGC 2 cut(s) 220, 375
FspBI CTAG 5 cut(s) 105, 191, 249, 263, 357
GlaI GCGC 2 cut(s) 18, 629
GluI GCNGC 2 cut(s) 220, 375
HaeII RGCGCY 1 cut(s) 631
HapII CCGG 2 cut(s) 163, 503
HhaI GCGC 2 cut(s) 19, 630
Hin6I GCGC 2 cut(s) 17, 628
HinP1I GCGC 2 cut(s) 17, 628
HincII GTYRAC 1 cut(s) 644
HindII GTYRAC 1 cut(s) 644
HindIII AAGCTT 2 cut(s) 317, 750
HinfI GANTC 2 cut(s) 341, 767
HpaII CCGG 2 cut(s) 163, 503
HphI GGTGA 2 cut(s) 34, 725
Hpy166II GTNNAC 2 cut(s) 24, 644
Hpy188I TCNGA 6 cut(s) 136, 367, 433, 454, 581, 655
Hpy188III TCNNGA 4 cut(s) 105, 163, 263, 509
Hpy8I GTNNAC 2 cut(s) 24, 644
HpyAV CCTTC 4 cut(s) 277, 312, 463, 641
HpyCH4III ACNGT 3 cut(s) 76, 388, 515
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 7 cut(s) 79, 180, 374, 403, 419, 487, 575
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 26
HspAI GCGC 2 cut(s) 17, 628
Kpn2I TCCGGA 1 cut(s) 162
Kzo9I GATC 6 cut(s) 58, 193, 288, 345, 367, 757
LpnPI CCDG 9 cut(s) 83, 176, 384, 413, 516, 522, 652, 695, 722
Lsp1109I GCAGC 2 cut(s) 206, 386
LweI GCATC 3 cut(s) 189, 445, 496
MaeI CTAG 5 cut(s) 105, 191, 249, 263, 357
MaeII ACGT 1 cut(s) 26
MalI GATC 6 cut(s) 60, 195, 290, 347, 369, 759
MboI GATC 6 cut(s) 58, 193, 288, 345, 367, 757
MboII GAAGA 3 cut(s) 591, 706, 715
MflI RGATCY 1 cut(s) 193
MluCI AATT 5 cut(s) 89, 256, 324, 427, 538
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 744
MnlI CCTC 4 cut(s) 128, 446, 577, 709
Mph1103I ATGCAT 2 cut(s) 182, 489
MroI TCCGGA 1 cut(s) 162
MseI TTAA 4 cut(s) 158, 206, 381, 731
MspI CCGG 2 cut(s) 163, 503
MspR9I CCNGG 2 cut(s) 504, 710
MvaI CCWGG 1 cut(s) 710
MvnI CGCG 1 cut(s) 19
NciI CCSGG 1 cut(s) 504
NdeII GATC 6 cut(s) 58, 193, 288, 345, 367, 757
NlaIV GGNNCC 2 cut(s) 167, 507
NsiI ATGCAT 2 cut(s) 182, 489
NspV TTCGAA 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 640
PkrI GCNGC 2 cut(s) 221, 376
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Ppu21I YACGTR 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 2 cut(s) 167, 507
PspPI GGNCC 2 cut(s) 433, 506
PstI CTGCAG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
SalI GTCGAC 1 cut(s) 642
SaqAI TTAA 4 cut(s) 158, 206, 381, 731
SatI GCNGC 2 cut(s) 220, 375
Sau3AI GATC 6 cut(s) 58, 193, 288, 345, 367, 757
Sau96I GGNCC 2 cut(s) 433, 506
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 504, 710
SfaNI GCATC 3 cut(s) 189, 445, 496
SfcI CTRYAG 3 cut(s) 372, 672, 703
SfuI TTCGAA 1 cut(s) 322
SinI GGWCC 2 cut(s) 433, 506
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
Sse9I AATT 5 cut(s) 89, 256, 324, 427, 538
SsiI CCGC 1 cut(s) 19
SspMI CTAG 5 cut(s) 105, 191, 249, 263, 357
StyD4I CCNGG 2 cut(s) 502, 708
StyI CCWWGG 3 cut(s) 45, 407, 663
TaaI ACNGT 3 cut(s) 76, 388, 515
TaiI ACGT 1 cut(s) 29
TaqI TCGA 6 cut(s) 61, 201, 277, 322, 344, 643
TasI AATT 5 cut(s) 89, 256, 324, 427, 538
Tru1I TTAA 4 cut(s) 158, 206, 381, 731
Tru9I TTAA 4 cut(s) 158, 206, 381, 731
TscAI CASTG 3 cut(s) 81, 391, 445
TseI GCWGC 2 cut(s) 219, 374
TspDTI ATGAA 3 cut(s) 298, 440, 707
TspRI CASTG 3 cut(s) 81, 391, 445
VpaK11BI GGWCC 2 cut(s) 433, 506
VspI ATTAAT 1 cut(s) 158
XapI RAATTY 2 cut(s) 427, 538
XbaI TCTAGA 2 cut(s) 104, 262
XmiI GTMKAC 1 cut(s) 643
XspI CTAG 5 cut(s) 105, 191, 249, 263, 357
Zsp2I ATGCAT 2 cut(s) 182, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.