RchiOBHm_Chr7g0228921

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018131
Physical Location & Seq
Forward (+)
52231408 .. 52232168
761 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20506

Sequence Viewer

Length: 459 bp
ATGGAGAAAGTGAAGACGGTTGGAGATGAATTCTTGGGAATAACGGGCACTCAAACATCCTCATCCTCATCCTCTGTTTTATTCCCAAAATTGAAACAACTCTATTTCGAGGGCATGGATGAGTGGGAACAGTGGGAAGGAATCAGCGGTGGTGCTGATGAAATTACAATTATGCCATGCCTTGTCGAGTTCACAATTGAGAAATGCCCTAAGCTGATGAACCTGCCACTCTTTCTACAAAACACACCGCTCAGGACTACTTCCATCAGTCAATGTCGACGGAGTATTATAACACCTGTCTGGCCCGACAACTGTGACGTCGACATTTATAGAGCGCTCGAGGATCCAGAAATACCAAATATTACTGAGAGGCTTGAAACAGAAATACAGATGGACTCACAGAGTGATGAGGAGATCACCATGTCACCTGTTGAAACAGAGAAACAGATAGAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

152

Amino Acids

17.27

Weight (kDa)

4.2

Isoelectric Point (pI)

66.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 2 cut(s) 277, 321
AciI CCGC 2 cut(s) 147, 248
AclWI GGATC 2 cut(s) 338, 351
AcsI RAATTY 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 318
AdeI CACNNNGTG 1 cut(s) 404
AfeI AGCGCT 1 cut(s) 336
AgsI TTSAA 3 cut(s) 94, 377, 434
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
AlwI GGATC 2 cut(s) 338, 351
Ama87I CYCGRG 1 cut(s) 338
Aor51HI AGCGCT 1 cut(s) 336
AoxI GGCC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 29
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 409, 417
AvaI CYCGRG 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 50
BamHI GGATCC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 20
BccI CCATC 2 cut(s) 272, 385
BfoI RGCGCY 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 231
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 20
Bpu10I CCTNAGC 2 cut(s) 210, 251
BsaHI GRCGYC 1 cut(s) 318
BseGI GGATG 4 cut(s) 56, 62, 68, 124
BseMII CTCAG 2 cut(s) 265, 357
BseRI GAGGAG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 50
BshFI GGCC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 338
BsnI GGCC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 343, 414
BspACI CCGC 2 cut(s) 147, 248
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 2 cut(s) 264, 358
BspLI GGNNCC 1 cut(s) 345
BspMI ACCTGC 1 cut(s) 231
BspPI GGATC 2 cut(s) 338, 351
BsrBI CCGCTC 1 cut(s) 250
BssMI GATC 2 cut(s) 343, 414
BssNI GRCGYC 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 19, 132, 314
BstACI GRCGYC 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 210, 251, 366
BstF5I GGATG 4 cut(s) 56, 62, 68, 124
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 2 cut(s) 346, 417
BstMBI GATC 2 cut(s) 343, 414
BstSLI GKGCMC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 304
BtsCI GGATG 4 cut(s) 56, 62, 68, 124
BtsIMutI CAGTG 1 cut(s) 137
BveI ACCTGC 1 cut(s) 231
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 303
CviAII CATG 3 cut(s) 115, 177, 421
CviJI RGCY 3 cut(s) 214, 304, 373
CviKI_1 RGCY 3 cut(s) 214, 304, 373
DdeI CTNAG 3 cut(s) 210, 251, 366
DpnI GATC 2 cut(s) 345, 416
DpnII GATC 2 cut(s) 343, 414
DraIII CACNNNGTG 1 cut(s) 404
Eco47III AGCGCT 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 29
FaeI CATG 3 cut(s) 118, 180, 424
FaiI YATR 7 cut(s) 116, 173, 178, 290, 330, 422, 457
FatI CATG 3 cut(s) 114, 176, 420
FblI GTMKAC 2 cut(s) 277, 321
FokI GGATG 4 cut(s) 43, 49, 55, 131
GlaI GCGC 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 1 cut(s) 304
HhaI GCGC 1 cut(s) 337
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 3 cut(s) 118, 180, 424
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 2 cut(s) 278, 322
HindII GTYRAC 2 cut(s) 278, 322
HinfI GANTC 3 cut(s) 141, 395, 452
HphI GGTGA 2 cut(s) 409, 417
Hpy166II GTNNAC 3 cut(s) 192, 278, 322
Hpy188III TCNNGA 2 cut(s) 253, 347
Hpy8I GTNNAC 3 cut(s) 192, 278, 322
Hpy99I CGWCG 2 cut(s) 282, 323
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 19, 132, 314
HpyCH4IV ACGT 1 cut(s) 318
HpyF3I CTNAG 3 cut(s) 210, 251, 366
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 3 cut(s) 118, 180, 424
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 2 cut(s) 343, 414
LpnPI CCDG 6 cut(s) 236, 238, 286, 309, 360, 441
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 314, 423
MalI GATC 2 cut(s) 345, 416
MbiI CCGCTC 1 cut(s) 250
MboI GATC 2 cut(s) 343, 414
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 5 cut(s) 29, 89, 162, 168, 195
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 7 cut(s) 70, 76, 82, 103, 334, 363, 403
MspA1I CMGCKG 1 cut(s) 147
MunI CAATTG 1 cut(s) 195
NdeII GATC 2 cut(s) 343, 414
NlaIII CATG 3 cut(s) 118, 180, 424
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 2 cut(s) 314, 423
PaeR7I CTCGAG 1 cut(s) 338
PfeI GAWTC 2 cut(s) 141, 452
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
PsiI TTATAA 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 338
PsuI RGATCY 1 cut(s) 343
SalI GTCGAC 2 cut(s) 276, 320
Sau3AI GATC 2 cut(s) 343, 414
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 1 cut(s) 389
SduI GDGCHC 1 cut(s) 50
SetI ASST 5 cut(s) 216, 225, 298, 321, 430
Sfr274I CTCGAG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 5 cut(s) 29, 89, 162, 168, 195
SsiI CCGC 2 cut(s) 147, 248
SspI AATATT 1 cut(s) 361
TaaI ACNGT 3 cut(s) 19, 132, 314
TaiI ACGT 1 cut(s) 321
TaqI TCGA 5 cut(s) 108, 186, 277, 321, 339
TasI AATT 5 cut(s) 29, 89, 162, 168, 195
TfiI GAWTC 2 cut(s) 141, 452
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 2 cut(s) 314, 423
Tsp45I GTSAC 2 cut(s) 314, 423
TspDTI ATGAA 3 cut(s) 42, 174, 233
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 137
XapI RAATTY 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 338
XmiI GTMKAC 2 cut(s) 277, 321
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.