Centromere protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0067941 RchiOBHm_Chr6g0290021 |
| rosa_roxburghii | Rroxscaffold_1G00066430 Rroxscaffold_5G00372550 Rroxscaffold_7G00210250 |
| rosa_samantha | Rh1BG185400 Rh2BG542200 Rh3BG259500 Rh5BG099000 Rh7BG442500 Rh7BG455400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 217 |
| AciI | CCGC | 2 cut(s) | 95, 108 |
| AcsI | RAATTY | 2 cut(s) | 161, 237 |
| AgsI | TTSAA | 2 cut(s) | 160, 243 |
| AluBI | AGCT | 1 cut(s) | 247 |
| AluI | AGCT | 1 cut(s) | 247 |
| Alw26I | GTCTC | 2 cut(s) | 176, 179 |
| AoxI | GGCC | 1 cut(s) | 153 |
| ApoI | RAATTY | 2 cut(s) | 161, 237 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 236, 268 |
| AsuHPI | GGTGA | 1 cut(s) | 52 |
| BbsI | GAAGAC | 2 cut(s) | 21, 246 |
| BccI | CCATC | 1 cut(s) | 71 |
| BcoDI | GTCTC | 2 cut(s) | 176, 179 |
| BfuAI | ACCTGC | 1 cut(s) | 217 |
| BisI | GCNGC | 1 cut(s) | 96 |
| BlsI | GCNGC | 1 cut(s) | 97 |
| BmsI | GCATC | 1 cut(s) | 67 |
| BpiI | GAAGAC | 2 cut(s) | 21, 246 |
| Bsa29I | ATCGAT | 1 cut(s) | 46 |
| BsaBI | GATNNNNATC | 1 cut(s) | 269 |
| BsaI | GGTCTC | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 1 cut(s) | 129 |
| Bse1I | ACTGG | 1 cut(s) | 172 |
| Bse3DI | GCAATG | 1 cut(s) | 209 |
| Bse8I | GATNNNNATC | 1 cut(s) | 269 |
| BseCI | ATCGAT | 1 cut(s) | 46 |
| BseDI | CCNNGG | 1 cut(s) | 129 |
| BseJI | GATNNNNATC | 1 cut(s) | 269 |
| BseMI | GCAATG | 1 cut(s) | 209 |
| BseMII | CTCAG | 1 cut(s) | 52 |
| BseNI | ACTGG | 1 cut(s) | 172 |
| BshFI | GGCC | 1 cut(s) | 155 |
| BshVI | ATCGAT | 1 cut(s) | 46 |
| BsmAI | GTCTC | 2 cut(s) | 176, 179 |
| BsmI | GAATGC | 1 cut(s) | 212 |
| BsnI | GGCC | 1 cut(s) | 155 |
| Bso31I | GGTCTC | 1 cut(s) | 176 |
| Bsp143I | GATC | 2 cut(s) | 43, 264 |
| BspACI | CCGC | 2 cut(s) | 95, 108 |
| BspANI | GGCC | 1 cut(s) | 155 |
| BspCNI | CTCAG | 1 cut(s) | 51 |
| BspDI | ATCGAT | 1 cut(s) | 46 |
| BspMI | ACCTGC | 1 cut(s) | 217 |
| BspTNI | GGTCTC | 1 cut(s) | 176 |
| BsrDI | GCAATG | 1 cut(s) | 209 |
| BsrI | ACTGG | 1 cut(s) | 172 |
| BssECI | CCNNGG | 1 cut(s) | 129 |
| BssMI | GATC | 2 cut(s) | 43, 264 |
| Bst6I | CTCTTC | 2 cut(s) | 62, 95 |
| BstC8I | GCNNGC | 1 cut(s) | 139 |
| BstDEI | CTNAG | 1 cut(s) | 38 |
| BstDSI | CCRYGG | 1 cut(s) | 129 |
| BstEII | GGTNACC | 1 cut(s) | 229 |
| BstKTI | GATC | 2 cut(s) | 46, 267 |
| BstMAI | GTCTC | 2 cut(s) | 176, 179 |
| BstMBI | GATC | 2 cut(s) | 43, 264 |
| BstPI | GGTNACC | 1 cut(s) | 229 |
| BstV2I | GAAGAC | 2 cut(s) | 21, 246 |
| Bsu15I | ATCGAT | 1 cut(s) | 46 |
| BsuRI | GGCC | 1 cut(s) | 155 |
| BsuTUI | ATCGAT | 1 cut(s) | 46 |
| BtgI | CCRYGG | 1 cut(s) | 129 |
| BtsIMutI | CAGTG | 1 cut(s) | 30 |
| BveI | ACCTGC | 1 cut(s) | 217 |
| Cac8I | GCNNGC | 1 cut(s) | 139 |
| ClaI | ATCGAT | 1 cut(s) | 46 |
| CviAII | CATG | 1 cut(s) | 189 |
| CviJI | RGCY | 3 cut(s) | 137, 155, 247 |
| CviKI_1 | RGCY | 3 cut(s) | 137, 155, 247 |
| DdeI | CTNAG | 1 cut(s) | 38 |
| DpnI | GATC | 2 cut(s) | 45, 266 |
| DpnII | GATC | 2 cut(s) | 43, 264 |
| Eam1104I | CTCTTC | 2 cut(s) | 62, 95 |
| EarI | CTCTTC | 2 cut(s) | 62, 95 |
| Eco31I | GGTCTC | 1 cut(s) | 176 |
| Eco32I | GATATC | 1 cut(s) | 120 |
| Eco91I | GGTNACC | 1 cut(s) | 229 |
| EcoO65I | GGTNACC | 1 cut(s) | 229 |
| EcoRV | GATATC | 1 cut(s) | 120 |
| FaeI | CATG | 1 cut(s) | 192 |
| FaiI | YATR | 2 cut(s) | 113, 190 |
| FatI | CATG | 1 cut(s) | 188 |
| Fnu4HI | GCNGC | 1 cut(s) | 96 |
| Fsp4HI | GCNGC | 1 cut(s) | 96 |
| GluI | GCNGC | 1 cut(s) | 96 |
| HaeIII | GGCC | 1 cut(s) | 155 |
| Hin1II | CATG | 1 cut(s) | 192 |
| HindIII | AAGCTT | 1 cut(s) | 245 |
| HinfI | GANTC | 4 cut(s) | 20, 48, 54, 125 |
| HphI | GGTGA | 1 cut(s) | 52 |
| Hpy188I | TCNGA | 5 cut(s) | 41, 53, 124, 148, 259 |
| HpyAV | CCTTC | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 1 cut(s) | 226 |
| HpyF3I | CTNAG | 1 cut(s) | 38 |
| Hsp92II | CATG | 1 cut(s) | 192 |
| Kzo9I | GATC | 2 cut(s) | 43, 264 |
| LmnI | GCTCC | 1 cut(s) | 192 |
| LpnPI | CCDG | 2 cut(s) | 153, 212 |
| LweI | GCATC | 1 cut(s) | 67 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 2 cut(s) | 45, 266 |
| MboI | GATC | 2 cut(s) | 43, 264 |
| MboII | GAAGA | 5 cut(s) | 23, 26, 49, 112, 246 |
| MluCI | AATT | 4 cut(s) | 161, 221, 237, 281 |
| MlyI | GAGTC | 2 cut(s) | 48, 119 |
| MmeI | TCCRAC | 1 cut(s) | 171 |
| MnlI | CCTC | 1 cut(s) | 25 |
| Mva1269I | GAATGC | 1 cut(s) | 212 |
| NdeII | GATC | 2 cut(s) | 43, 264 |
| NlaIII | CATG | 1 cut(s) | 192 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PctI | GAATGC | 1 cut(s) | 212 |
| PfeI | GAWTC | 2 cut(s) | 20, 48 |
| PkrI | GCNGC | 1 cut(s) | 97 |
| PleI | GAGTC | 2 cut(s) | 48, 119 |
| PpsI | GAGTC | 2 cut(s) | 48, 119 |
| PspEI | GGTNACC | 1 cut(s) | 229 |
| SatI | GCNGC | 1 cut(s) | 96 |
| Sau3AI | GATC | 2 cut(s) | 43, 264 |
| SchI | GAGTC | 2 cut(s) | 48, 119 |
| SetI | ASST | 3 cut(s) | 36, 231, 249 |
| SfaNI | GCATC | 1 cut(s) | 67 |
| SgeI | CNNG | 9 cut(s) | 43, 104, 142, 150, 163, 180, 201, 221, 239 |
| Sse9I | AATT | 4 cut(s) | 161, 221, 237, 281 |
| SsiI | CCGC | 2 cut(s) | 95, 108 |
| TaqI | TCGA | 1 cut(s) | 46 |
| TasI | AATT | 4 cut(s) | 161, 221, 237, 281 |
| TauI | GCSGC | 1 cut(s) | 98 |
| TfiI | GAWTC | 2 cut(s) | 20, 48 |
| TscAI | CASTG | 1 cut(s) | 30 |
| TspGWI | ACGGA | 1 cut(s) | 118 |
| TspRI | CASTG | 1 cut(s) | 30 |
| XapI | RAATTY | 2 cut(s) | 161, 237 |