Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018195

Physical Location & Seq

Genomic Coordinates Reverse (-)

60517041 .. 60518633

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGAGAGAAGAAGACGATTCAGTGAGCGAGGTTTTCAGAGATCGATTCAGACTCTCCACCATCTCTATCGTCGATGCCGAAGTTCTCCAAGCAGCGAAGAGAAGCGGCATGGAGATATCGGAACCCGTGGTGGCTTGCATTTCTGACTTGGCCTTCAAATTTACTGATGCAGGTAATGATGCAGATGTGCCGAACAGTGGTGGCTATCACTCTGTTGCCATTGCATATGGAAACCCGGATGAAACAACCGAGCAGAAGAGTAATGATGCTGAGCCTGTTTGTCTGATTGTTAACAAATATGGCCAGATGATAATTGCTAAGGTGCATGTCTTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

113

Amino Acids

12.38

Weight (kDa)

4.44

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018195)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0067941 RchiOBHm_Chr6g0290021
rosa_roxburghii	Rroxscaffold_1G00066430 Rroxscaffold_5G00372550 Rroxscaffold_7G00210250
rosa_samantha	Rh1BG185400 Rh2BG542200 Rh3BG259500 Rh5BG099000 Rh7BG442500 Rh7BG455400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
AciI	CCGC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	160
AoxI	GGCC	2 cut(s)	153, 304
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	96, 109
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	2 cut(s)	97, 110
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	4 cut(s)	67, 160, 172, 259
BpiI	GAAGAC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	107
BshFI	GGCC	2 cut(s)	155, 306
BshVI	ATCGAT	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	200
BsnI	GGCC	2 cut(s)	155, 306
Bsp143I	GATC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	155, 306
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	2 cut(s)	95, 254
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	273, 321
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	155, 306
BsuTUI	ATCGAT	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	30, 205
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	46
CviAII	CATG	2 cut(s)	112, 329
CviJI	RGCY	5 cut(s)	137, 155, 207, 277, 306
CviKI_1	RGCY	5 cut(s)	137, 155, 207, 277, 306
DdeI	CTNAG	2 cut(s)	273, 321
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	2 cut(s)	95, 254
EarI	CTCTTC	2 cut(s)	95, 254
Eco32I	GATATC	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	120
FaeI	CATG	2 cut(s)	115, 332
FaiI	YATR	5 cut(s)	113, 229, 231, 303, 330
FatI	CATG	2 cut(s)	111, 328
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	96, 109
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	96, 109
GluI	GCNGC	2 cut(s)	96, 109
HaeIII	GGCC	2 cut(s)	155, 306
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	2 cut(s)	115, 332
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	20, 48, 54
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	5 cut(s)	41, 53, 124, 148, 288
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	5 cut(s)	141, 173, 185, 227, 328
HpyF3I	CTNAG	2 cut(s)	273, 321
Hsp92II	CATG	2 cut(s)	115, 332
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	4 cut(s)	159, 252, 291, 320
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	4 cut(s)	67, 160, 172, 259
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	4 cut(s)	23, 26, 112, 271
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	2 cut(s)	161, 315
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	1 cut(s)	25
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	306
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	239
NciI	CCSGG	1 cut(s)	239
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	115, 332
NlaIV	GGNNCC	1 cut(s)	126
NspI	RCATGY	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	20, 48
PkrI	GCNGC	2 cut(s)	97, 110
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	96, 109
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	3 cut(s)	36, 178, 327
SfaNI	GCATC	4 cut(s)	67, 160, 172, 259
Sse9I	AATT	2 cut(s)	161, 315
SsiI	CCGC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	46, 75
TasI	AATT	2 cut(s)	161, 315
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	20, 48
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	30, 205
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	30, 205
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.