Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018195

Physical Location & Seq

Genomic Coordinates Reverse (-)

53707570 .. 53711466

Gene Structure 3897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG455400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCCGAAGTTTTCAATTCTAGTTCTCCAAGCAGCGAAGAGAAGCGGCATGGAGATATCGGAACCCGTGGTGGCTTGCATTTCCGACTTGGCCTTCAAATTTACTGGTCTCTTTGCTTTGGAGACATGGAGCAATAAGCAATGCCAAGCATTCCCCAAATTGCAGAATGGTAGAATCAGTTCGTTGGATTTTCTCAAGGCTTCGAGTTATGTAGTGACTGCTAGTGATGATGAGTCTATTTGCTTGTATGATGTCTCCACTGCAGCGTGCTTGAAGACCATTAACAGCAAAAAGGAACTAGCAAAGGATTTCGTTGTTGCTGGCACTGCATCAGCGTGCGTATATGGTGCTTGTGAGGCGATGTTCAAGCCTGACATGGATGCTGGACTTTTTTTACCTATACATGGTTCTGCTCCTGATATTGCTGGACAGATCAAAGTTTCAAACTTTGCACTTATTAGTGCATTTATGACGGAGTTGGAAGCTGAACACCTGTTATCCAGGTTTATATGTGATCCTTTTATTGGAAATTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

179

Amino Acids

19.28

Weight (kDa)

5.15

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	55 - 98	1.6e-06	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	56 - 119	1.9e-07	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018195)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0067941 RchiOBHm_Chr6g0290021
rosa_roxburghii	Rroxscaffold_1G00066430 Rroxscaffold_5G00372550 Rroxscaffold_7G00210250
rosa_samantha	Rh1BG185400 Rh2BG542200 Rh3BG259500 Rh5BG099000 Rh7BG442500 Rh7BG455400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	2 cut(s)	98, 529
AfiI	CCNNNNNNNGG	2 cut(s)	404, 524
AgsI	TTSAA	5 cut(s)	15, 97, 274, 367, 444
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	1 cut(s)	485
AluI	AGCT	1 cut(s)	485
Alw26I	GTCTC	3 cut(s)	113, 116, 259
AlwI	GGATC	1 cut(s)	509
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	32, 263
ApoI	RAATTY	2 cut(s)	98, 529
Asp700I	GAANNNNTTC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	44, 275
BciT130I	CCWGG	1 cut(s)	502
BcoDI	GTCTC	3 cut(s)	113, 116, 259
BfaI	CTAG	3 cut(s)	20, 222, 299
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	3 cut(s)	33, 46, 264
BlsI	GCNGC	3 cut(s)	34, 47, 265
Bme1390I	CCNGG	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	2 cut(s)	338, 370
BpiI	GAAGAC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 524
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	404, 524
BseMI	GCAATG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	44, 275
BshFI	GGCC	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	404, 524
BsmAI	GTCTC	3 cut(s)	113, 116, 259
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	432, 514
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	432, 514
Bst2UI	CCWGG	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	4 cut(s)	76, 268, 322, 337
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	2 cut(s)	435, 517
BstMAI	GTCTC	3 cut(s)	113, 116, 259
BstMBI	GATC	2 cut(s)	432, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 356
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	44, 275
BstV2I	GAAGAC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	2 cut(s)	258, 324
BtsIMutI	CAGTG	2 cut(s)	258, 324
Cac8I	GCNNGC	4 cut(s)	76, 268, 322, 337
CviAII	CATG	5 cut(s)	49, 126, 376, 404, 537
CviJI	RGCY	5 cut(s)	74, 92, 200, 370, 485
CviKI_1	RGCY	5 cut(s)	74, 92, 200, 370, 485
DpnI	GATC	2 cut(s)	434, 516
DpnII	GATC	2 cut(s)	432, 514
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	500
EcoRV	GATATC	1 cut(s)	57
FaeI	CATG	5 cut(s)	52, 129, 379, 407, 540
FatI	CATG	5 cut(s)	48, 125, 375, 403, 536
Fnu4HI	GCNGC	3 cut(s)	33, 46, 264
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	33, 46, 264
FspBI	CTAG	3 cut(s)	20, 222, 299
GluI	GCNGC	3 cut(s)	33, 46, 264
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	5 cut(s)	52, 129, 379, 407, 540
HinfI	GANTC	2 cut(s)	174, 233
Hpy188I	TCNGA	2 cut(s)	61, 85
Hpy188III	TCNNGA	1 cut(s)	416
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	6 cut(s)	78, 163, 263, 329, 452, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 356
Hsp92II	CATG	5 cut(s)	52, 129, 379, 407, 540
Kzo9I	GATC	2 cut(s)	432, 514
LmnI	GCTCC	2 cut(s)	129, 418
LpnPI	CCDG	9 cut(s)	90, 306, 369, 384, 411, 429, 487, 506, 514
Lsp1109I	GCAGC	2 cut(s)	44, 275
LweI	GCATC	2 cut(s)	338, 370
MaeI	CTAG	3 cut(s)	20, 222, 299
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	434, 516
MboI	GATC	2 cut(s)	432, 514
MboII	GAAGA	2 cut(s)	49, 286
MluCI	AATT	4 cut(s)	15, 98, 158, 529
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	3 cut(s)	108, 165, 459
MnlI	CCTC	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	502
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	326, 356
NdeII	GATC	2 cut(s)	432, 514
NlaIII	CATG	5 cut(s)	52, 129, 379, 407, 540
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	214
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	34, 47, 265
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	63
PsrI	GAACNNNNNNTAC	2 cut(s)	163, 195
PstI	CTGCAG	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	3 cut(s)	33, 46, 264
Sau3AI	GATC	2 cut(s)	432, 514
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	502
SetI	ASST	4 cut(s)	400, 487, 495, 506
SfaNI	GCATC	2 cut(s)	338, 370
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	4 cut(s)	15, 98, 158, 529
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	3 cut(s)	20, 222, 299
StyD4I	CCNGG	1 cut(s)	500
TaqI	TCGA	1 cut(s)	203
TasI	AATT	4 cut(s)	15, 98, 158, 529
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	265, 331
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	32, 263
Tsp45I	GTSAC	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	2 cut(s)	265, 331
XapI	RAATTY	2 cut(s)	98, 529
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	3 cut(s)	20, 222, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.