Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018195

Physical Location & Seq

Genomic Coordinates Forward (+)

9018974 .. 9021735

Gene Structure 2762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG099000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCCGAAGTTTTCAATTCTAGTTCTCCAAGCAGCGAAGAGAAGCGGCATGGAGATATCGGAACCCGTGGTGGCTTGCATTTCTGACTTGGCCTTCAAATTTACTGAGTCTCTTAAAGTAGTTGTTTCAAGATCTAAGAATTCACTTGTTTTGGGGTTTTCTTTTGTGACATATGTTCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

61

Amino Acids

6.68

Weight (kDa)

9.43

Isoelectric Point (pI)

75.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018195)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0067941 RchiOBHm_Chr6g0290021
rosa_roxburghii	Rroxscaffold_1G00066430 Rroxscaffold_5G00372550 Rroxscaffold_7G00210250
rosa_samantha	Rh1BG185400 Rh2BG542200 Rh3BG259500 Rh5BG099000 Rh7BG442500 Rh7BG455400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	98, 139
AgsI	TTSAA	4 cut(s)	15, 97, 129, 179
Alw26I	GTCTC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	2 cut(s)	98, 139
BbvI	GCAGC	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	20
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	2 cut(s)	33, 46
BlsI	GCNGC	2 cut(s)	34, 47
BmiI	GGNNCC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	44
BshFI	GGCC	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	105, 135
BstDSI	CCRYGG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	76
CciI	TCATGA	1 cut(s)	182
CviAII	CATG	2 cut(s)	49, 183
CviJI	RGCY	2 cut(s)	74, 92
CviKI_1	RGCY	2 cut(s)	74, 92
DdeI	CTNAG	2 cut(s)	105, 135
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	57
FaeI	CATG	2 cut(s)	52, 186
FaiI	YATR	4 cut(s)	50, 172, 174, 184
FatI	CATG	2 cut(s)	48, 182
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	33, 46
Fsp4HI	GCNGC	2 cut(s)	33, 46
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	2 cut(s)	33, 46
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	52, 186
HinfI	GANTC	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	61, 85
Hpy188III	TCNNGA	2 cut(s)	129, 183
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	105, 135
Hsp92II	CATG	2 cut(s)	52, 186
Kzo9I	GATC	1 cut(s)	131
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	1 cut(s)	131
MluCI	AATT	3 cut(s)	15, 98, 139
MlyI	GAGTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	114
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	52, 186
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	34, 47
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	33, 46
Sau3AI	GATC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	116
SgeI	CNNG	9 cut(s)	32, 41, 61, 77, 79, 87, 100, 141, 158
Sse9I	AATT	3 cut(s)	15, 98, 139
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	1 cut(s)	20
TasI	AATT	3 cut(s)	15, 98, 139
TauI	GCSGC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	166
XapI	RAATTY	2 cut(s)	98, 139
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.