RchiOBHm_Chr5g0070321
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015235
Physical Location & Seq
Forward (+)
76086540 .. 76088076
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34557

Sequence Viewer

Length: 948 bp
ATGTCGGGGGACGGGTGTAGGGGAAGAATCTCGCCACGTGGAAGCCCGCTGTGGATGGCGCCGGAGGTGATTAGCGGGGAGTATCAGGGGCCGGAGTCCGACGTGTGGTCGTTGGGGTGCACGGTGATCGAGATGGTCACGGGAAAGCCGGCGTGGGAGGACGAGGGAATGGAGACGCTGAGCCGGATCGGGTTGTCGGGCGGGTTGCCGGAGTTTCCGACCCGGTTGTCCGAAACGGGTCGGGATTTTCTGGACAAGTGTCTGAGGAGAGACCCGGAGGAGAGGTGGAGCTGCGATCAGCTACTGCAGCACCCATTTCTGGCGTCAGTTTCGCCCAATGCGGCGGCGGATTCTTCGCCGCGGTGCGTGCTCGACTGGGTCAACTCGGAGTTCGAAGACGACGAGTACGAAAACGACGAAGAGAGTTGTTCTATTCACGAGGATTCCGCTAAGGAGCGGATTGGTAAATTGGCCTCGAACTCAGGGGTAGATTGGGAATTATCGGACGGGTGGACGGTGGTGCGGGGCGCAGTAGAAGTAGTGGAATCCGGCGCGTTTTCGCGGGAAGAGACGAGTTCGGGATATTCTCATTGTGAAGGGGCATTTTCGGAAGGTGAAAGTTGCGGTGGCGGTGATTTAGTGGAGTGGGCACGTAATGAGTGTGATACGGTTGGCTCAAGTGGTCGTTGGTATGGGCCGTCGGTGATGGAATATTCGGCGGTGGAGAGGAGCGTCGGCAAAGGAAGAAAGTCTTATAATTATTATAGCCGGTGTAGTAATTTGTGTAGAAGCAGATTTTTACTTGCATATTCTTTTGGGGTGAAAATGAATAAATTACTGATTTTTATGAGTTGTTATACTTGTGTTATCTTTGCTTGGAGATATAATAAAGTCGAAATATTACTTGATTTTTCTTGTACTCATGATGTTCTTTTTCGTTTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000165 GO:0000186 GO:0000746 GO:0000747 GO:0000749 GO:0000750 GO:0000935 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010514 GO:0010562 GO:0010564 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019236 GO:0019538 GO:0019953 GO:0022414 GO:0022603 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030428 GO:0031098 GO:0031136 GO:0031137 GO:0031139 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032005 GO:0032147 GO:0032153 GO:0032155 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0034306 GO:0034307 GO:0035556 GO:0036211 GO:0042173 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043067 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0043902 GO:0043937 GO:0043940 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044703 GO:0044764 GO:0045595 GO:0045859 GO:0045860 GO:0045937 GO:0046999 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051286 GO:0051338 GO:0051347 GO:0051445 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0060284 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071444 GO:0071507 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

315

Amino Acids

35.11

Weight (kDa)

4.65

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 12 - 107 1.1e-21 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 103 1.1e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015235)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07150 AT1G07150 AT2G30040
fragaria_vesca FvH4_3g39010
malus_domestica MD03G1065400.v1.1 MD11G1070200.v1.1
prunus_persica Prupe.6G054400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070321
rosa_laevigata RLG00000036124
rosa_multiflora Rmu_co8495105.1_g000001 Rmu_sc0009590.1_g000003
rosa_rugosa Rorug05G0404900
rosa_samantha Rh5AG460500 Rh5BG478800 Rh5CG503000
rosa_wichuraiana Rw5G042920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
AasI GACNNNNNNGTC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 58
AccBSI CCGCTC 1 cut(s) 457
AccII CGCG 3 cut(s) 361, 554, 562
AclWI GGATC 1 cut(s) 194
AcvI CACGTG 1 cut(s) 38
AcyI GRCGYC 2 cut(s) 59, 323
AfaI GTAC 2 cut(s) 407, 919
AfiI CCNNNNNNNGG 2 cut(s) 105, 319
AflIII ACRYGT 1 cut(s) 102
AhdI GACNNNNNGTC 1 cut(s) 106
AjiI CACGTC 1 cut(s) 103
AluBI AGCT 2 cut(s) 291, 301
AluI AGCT 2 cut(s) 291, 301
Alw21I GWGCWC 2 cut(s) 122, 372
Alw26I GTCTC 3 cut(s) 167, 264, 563
Alw44I GTGCAC 1 cut(s) 118
AlwI GGATC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 304
AoxI GGCC 3 cut(s) 89, 471, 695
ApaLI GTGCAC 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 291, 307
AspLEI GCGC 3 cut(s) 61, 530, 554
AspS9I GGNCC 2 cut(s) 89, 695
AsuC2I CCSGG 2 cut(s) 223, 275
AsuHPI GGTGA 6 cut(s) 79, 136, 626, 644, 715, 832
AsuII TTCGAA 1 cut(s) 393
BaeGI GKGCMC 2 cut(s) 122, 652
BanI GGYRCC 1 cut(s) 58
BauI CACGAG 1 cut(s) 437
BbrPI CACGTG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 122, 372
BbvI GCAGC 2 cut(s) 278, 319
BccI CCATC 3 cut(s) 49, 127, 700
BceAI ACGGC 1 cut(s) 682
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BcnI CCSGG 2 cut(s) 223, 275
BcoDI GTCTC 3 cut(s) 167, 264, 563
BfmI CTRYAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 5 cut(s) 292, 308, 342, 345, 359
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 5 cut(s) 293, 309, 343, 346, 360
Bme1390I CCNGG 2 cut(s) 223, 275
BmeRI GACNNNNNGTC 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 89, 695
BmiI GGNNCC 2 cut(s) 60, 90
BmrFI CCNGG 2 cut(s) 223, 275
BmrI ACTGGG 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 385
BoxI GACNNNNGTC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 661
BpuMI CCSGG 2 cut(s) 223, 275
BsaAI YACGTR 2 cut(s) 38, 653
BsaHI GRCGYC 2 cut(s) 59, 323
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 319
Bse118I RCCGGY 2 cut(s) 148, 768
Bse1I ACTGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 105, 319
BseMII CTCAG 3 cut(s) 170, 254, 495
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 3 cut(s) 280, 293, 742
BseSI GKGCMC 2 cut(s) 122, 652
BseXI GCAGC 2 cut(s) 278, 319
Bsh1236I CGCG 3 cut(s) 361, 554, 562
BshFI GGCC 3 cut(s) 91, 473, 697
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 2 cut(s) 122, 372
BsiSI CCGG 9 cut(s) 62, 92, 149, 184, 209, 223, 275, 549, 769
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 105, 319
BsmAI GTCTC 3 cut(s) 167, 264, 563
BsmBI CGTCTC 2 cut(s) 167, 563
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 3 cut(s) 91, 473, 697
Bso31I GGTCTC 1 cut(s) 264
Bsp119I TTCGAA 1 cut(s) 393
Bsp1286I GDGCHC 3 cut(s) 122, 372, 652
Bsp143I GATC 3 cut(s) 126, 186, 295
Bsp1720I GCTNAGC 1 cut(s) 179
BspANI GGCC 3 cut(s) 91, 473, 697
BspCNI CTCAG 3 cut(s) 171, 255, 494
BspFNI CGCG 3 cut(s) 361, 554, 562
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 2 cut(s) 60, 90
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 393
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 264
BsrBI CCGCTC 1 cut(s) 457
BsrFI RCCGGY 2 cut(s) 148, 768
BsrI ACTGG 1 cut(s) 380
BssAI RCCGGY 2 cut(s) 148, 768
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 3 cut(s) 126, 186, 295
BssNI GRCGYC 2 cut(s) 59, 323
BssSI CACGAG 1 cut(s) 437
Bst2BI CACGAG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 124, 517, 670
Bst6I CTCTTC 2 cut(s) 414, 561
BstACI GRCGYC 2 cut(s) 59, 323
BstBAI YACGTR 2 cut(s) 38, 653
BstBI TTCGAA 1 cut(s) 393
BstC8I GCNNGC 3 cut(s) 47, 150, 368
BstDEI CTNAG 4 cut(s) 179, 263, 450, 481
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 3 cut(s) 361, 554, 562
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 3 cut(s) 61, 530, 554
BstKTI GATC 3 cut(s) 129, 189, 298
BstMAI GTCTC 3 cut(s) 167, 264, 563
BstMBI GATC 3 cut(s) 126, 186, 295
BstMWI GCNNNNNNNGC 2 cut(s) 307, 367
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 221, 273
BstSFI CTRYAG 1 cut(s) 305
BstSLI GKGCMC 2 cut(s) 122, 652
BstUI CGCG 3 cut(s) 361, 554, 562
BstV1I GCAGC 2 cut(s) 278, 319
BstV2I GAAGAC 1 cut(s) 402
BsuRI GGCC 3 cut(s) 91, 473, 697
BtgI CCRYGG 1 cut(s) 359
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 60
Cac8I GCNNGC 3 cut(s) 47, 150, 368
CaiI CAGNNNCTG 1 cut(s) 304
CciI TCATGA 1 cut(s) 922
CfoI GCGC 3 cut(s) 61, 530, 554
Cfr10I RCCGGY 2 cut(s) 148, 768
Cfr13I GGNCC 2 cut(s) 89, 695
Cfr42I CCGCGG 1 cut(s) 362
CseI GACGC 3 cut(s) 184, 312, 721
Csp6I GTAC 2 cut(s) 406, 918
CviAII CATG 1 cut(s) 923
CviQI GTAC 2 cut(s) 406, 918
DdeI CTNAG 4 cut(s) 179, 263, 450, 481
DinI GGCGCC 1 cut(s) 60
DpnI GATC 3 cut(s) 128, 188, 297
DpnII GATC 3 cut(s) 126, 186, 295
DrdI GACNNNNNNGTC 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 414, 561
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 2 cut(s) 414, 561
EciI GGCGGA 1 cut(s) 362
Eco31I GGTCTC 1 cut(s) 264
Eco72I CACGTG 1 cut(s) 38
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
Esp3I CGTCTC 2 cut(s) 167, 563
FaeI CATG 1 cut(s) 926
FaiI YATR 8 cut(s) 693, 756, 765, 808, 848, 858, 885, 924
FalI AAGNNNNNCTT 2 cut(s) 736, 768
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 922
FauI CCCGC 5 cut(s) 54, 68, 194, 516, 555
Fnu4HI GCNGC 5 cut(s) 292, 308, 342, 345, 359
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 5 cut(s) 292, 308, 342, 345, 359
GlaI GCGC 3 cut(s) 60, 529, 553
GluI GCNGC 5 cut(s) 292, 308, 342, 345, 359
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 3 cut(s) 91, 473, 697
HapII CCGG 9 cut(s) 62, 92, 149, 184, 209, 223, 275, 549, 769
HgaI GACGC 3 cut(s) 184, 312, 721
HhaI GCGC 3 cut(s) 61, 530, 554
Hin1I GRCGYC 2 cut(s) 59, 323
Hin1II CATG 1 cut(s) 926
Hin6I GCGC 3 cut(s) 59, 528, 552
HinP1I GCGC 3 cut(s) 59, 528, 552
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 5 cut(s) 27, 95, 350, 443, 545
HpaII CCGG 9 cut(s) 62, 92, 149, 184, 209, 223, 275, 549, 769
HphI GGTGA 6 cut(s) 79, 136, 626, 644, 715, 832
Hpy166II GTNNAC 3 cut(s) 120, 382, 513
Hpy188I TCNGA 7 cut(s) 100, 219, 232, 264, 388, 505, 610
Hpy188III TCNNGA 6 cut(s) 130, 242, 251, 437, 579, 923
Hpy8I GTNNAC 3 cut(s) 120, 382, 513
Hpy99I CGWCG 5 cut(s) 104, 404, 419, 703, 737
HpyAV CCTTC 2 cut(s) 590, 605
HpyCH4III ACNGT 3 cut(s) 124, 517, 670
HpyCH4IV ACGT 3 cut(s) 37, 102, 652
HpyCH4V TGCA 3 cut(s) 120, 307, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 367
HpyF3I CTNAG 4 cut(s) 179, 263, 450, 481
HpySE526I ACGT 3 cut(s) 37, 102, 652
Hsp92I GRCGYC 2 cut(s) 59, 323
Hsp92II CATG 1 cut(s) 926
HspAI GCGC 3 cut(s) 59, 528, 552
KasI GGCGCC 1 cut(s) 58
KroI GCCGGC 1 cut(s) 148
KroNI GCCGGC 1 cut(s) 150
KspI CCGCGG 1 cut(s) 362
Kzo9I GATC 3 cut(s) 126, 186, 295
LmnI GCTCC 3 cut(s) 288, 454, 729
Lsp1109I GCAGC 2 cut(s) 278, 319
MaeII ACGT 3 cut(s) 37, 102, 652
MaeIII GTNAC 1 cut(s) 136
MalI GATC 3 cut(s) 128, 188, 297
MbiI CCGCTC 1 cut(s) 457
MboI GATC 3 cut(s) 126, 186, 295
MboII GAAGA 6 cut(s) 36, 345, 407, 431, 578, 756
MhlI GDGCHC 3 cut(s) 122, 372, 652
MluCI AATT 5 cut(s) 467, 497, 757, 778, 833
Mly113I GGCGCC 1 cut(s) 59
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 2 cut(s) 123, 242
MnlI CCTC 9 cut(s) 58, 151, 157, 258, 271, 276, 433, 484, 720
MroNI GCCGGC 1 cut(s) 148
MspA1I CMGCKG 2 cut(s) 49, 361
MspI CCGG 9 cut(s) 62, 92, 149, 184, 209, 223, 275, 549, 769
MspR9I CCNGG 2 cut(s) 223, 275
MvnI CGCG 3 cut(s) 361, 554, 562
MwoI GCNNNNNNNGC 2 cut(s) 307, 367
NaeI GCCGGC 1 cut(s) 150
NarI GGCGCC 1 cut(s) 59
NciI CCSGG 2 cut(s) 223, 275
NdeII GATC 3 cut(s) 126, 186, 295
NgoMIV GCCGGC 1 cut(s) 148
NlaIII CATG 1 cut(s) 926
NlaIV GGNNCC 2 cut(s) 60, 90
NmuCI GTSAC 1 cut(s) 136
NspV TTCGAA 1 cut(s) 393
PagI TCATGA 1 cut(s) 922
PcsI WCGNNNNNNNCGW 3 cut(s) 399, 405, 414
PdiI GCCGGC 1 cut(s) 150
PfeI GAWTC 4 cut(s) 27, 350, 443, 545
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 5 cut(s) 293, 309, 343, 346, 360
PleI GAGTC 1 cut(s) 103
PluTI GGCGCC 1 cut(s) 62
PmaCI CACGTG 1 cut(s) 38
PmlI CACGTG 1 cut(s) 38
PpsI GAGTC 1 cut(s) 103
Ppu21I YACGTR 2 cut(s) 38, 653
PshAI GACNNNNGTC 1 cut(s) 258
PsiI TTATAA 1 cut(s) 756
PspCI CACGTG 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 60, 90
PspPI GGNCC 2 cut(s) 89, 695
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 304
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 2 cut(s) 407, 919
RsaNI GTAC 2 cut(s) 406, 918
SacII CCGCGG 1 cut(s) 362
SatI GCNGC 5 cut(s) 292, 308, 342, 345, 359
Sau3AI GATC 3 cut(s) 126, 186, 295
Sau96I GGNCC 2 cut(s) 89, 695
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 223, 275
SduI GDGCHC 3 cut(s) 122, 372, 652
SetI ASST 8 cut(s) 40, 69, 105, 287, 293, 303, 616, 655
SfcI CTRYAG 1 cut(s) 305
SfoI GGCGCC 1 cut(s) 60
Sfr303I CCGCGG 1 cut(s) 362
SfuI TTCGAA 1 cut(s) 393
SgrBI CCGCGG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
Sse9I AATT 5 cut(s) 467, 497, 757, 778, 833
SspDI GGCGCC 1 cut(s) 58
SspI AATATT 2 cut(s) 713, 900
StyD4I CCNGG 2 cut(s) 221, 273
TaaI ACNGT 3 cut(s) 124, 517, 670
TaiI ACGT 3 cut(s) 40, 105, 655
TaqI TCGA 5 cut(s) 129, 372, 393, 476, 894
TasI AATT 5 cut(s) 467, 497, 757, 778, 833
TatI WGTACW 1 cut(s) 917
TauI GCSGC 3 cut(s) 344, 347, 361
TfiI GAWTC 4 cut(s) 27, 350, 443, 545
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 2 cut(s) 291, 307
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 842
Tth111I GACNNNGTC 1 cut(s) 377
VneI GTGCAC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.