Rorug05G0404900
ERF Family

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002740
Physical Location & Seq
Reverse (-)
55752617 .. 55758532
5916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0404900.1

Sequence Viewer

Length: 1362 bp
ATGATGGACTTCGATAGCCTTCTCGACTTCGAGAGCGACGAGCCAGTCCTCAACCCCCCTCCTAAGAAAAGGAAGAAAGTTATTGGGCTGGATGATCTTTTGACTGATTTCTACAAGGAAGAAGGTAAACTTGTTGAAAAGGCGGCTAGGAAAGCAAAGGCCAAGGCACGGCGGAACAATGATTCAGATGAAGAGGATGAACACAGAGAGGCTTCCCTCTCTCAACTTGTTGATACGTGCGAAAACCAGATAATAGAAATAGGTGGCAAGGAGGATAGCTTTTTGTGGGGGATATGCGTTTTCGGAGACCAGAGAACCCCACCTCCTCTTGCTTTTCCTGAGCTTAAAAGTTGCACAGTCTTGCAGTCTTTCATGAACAACAAGCTCAATTCTGAGTTTGAAATCTGTACGGACAACGGAGACACTTTGCTAGAAGGGTTATTAGTAAATGGCTGGCTTTCAAAAGTGGTTCTTGCCAGGGGTCATGTGGAAAAGTCTGTAGCCATGTGGACCTTTAATTTGATGGCATATTCATCAAATGAAGAGTTGAGGACATCTGCATGTGACTTCTGGTGTGCTATCCTCTCATCCAAAAATGAGCAAGTTAAAATCGATTGGTTCCCTAGCTATTCTGAGTTAAAATTGGCTCTTGAAAACTATGGTTTTCTGTTCAACTCTTCGACTATGGAATATGTTCATTCCAGTTCTGGTCATCAAGGTCCAGCTCAAAATATTAGAGTGTGGATCAAATATGCAACTACTTCTTGTCAAGTGAGGAGCAAAACAGCTATATATTTGACCTCGGAAGCAGAAGAGTTATTAGAAGTTATAATTTATCTGTTTTTAGACCGCCAGCTTCAAGGTCTGTTTGTGCTTTTGCACGAATGCTTGCAGTCAGCTATCAGTTACTTCACAGACAATGAATGGGAATCTAGCTGTGAGAAGATAGCAAAATCTCTTGCTCGCAGAATCCCTAAGGATGTGAACTGCTTAAGAATTGTGGAATGCATTTCGGGAGCCAATTCTCGCAGCAAGCTGTTTAGAAGTGCGGTTGCCTATCAAATCCTTCATAGTTGTTTTGATTATAAGGCCCAGGATGAAGTAGAGGTCCTAAATTTGCTAATCTCAATCAATGTGAAAGACAAAAACTGTGATTTCTTCAAGGTGTATGTATACTTGGTGTTGACCGAGAATTGGCTCTTGTCTAATCAACTGAGTGAAGACAAGCAAGTATTGAATGAAATGTGGCGCTTGTACTTACGAAACTGTTCTTGCCTGATCGCCAGTACAGATTTGAGATCCTTTGCCTCTAAGGTCCGTAATAAGGCTGCATATCTCCTGCAAGGCACCATCACCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

453

Amino Acids

51.78

Weight (kDa)

5.23

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 830, 1086
AasI GACNNNNNNGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 1346
AccI GTMKAC 1 cut(s) 1173
AciI CCGC 4 cut(s) 143, 172, 850, 1049
AclWI GGATC 2 cut(s) 752, 1293
AcsI RAATTY 1 cut(s) 1114
AfaI GTAC 3 cut(s) 409, 1256, 1288
AfiI CCNNNNNNNGG 3 cut(s) 168, 1194, 1324
AflII CTTAAG 1 cut(s) 991
AgsI TTSAA 8 cut(s) 137, 401, 462, 653, 673, 860, 1162, 1237
AjnI CCWGG 2 cut(s) 476, 1092
AloI GAACNNNNNNTCC 2 cut(s) 307, 339
Alw26I GTCTC 2 cut(s) 300, 414
AlwI GGATC 2 cut(s) 752, 1293
AoxI GGCC 2 cut(s) 159, 1089
ApeKI GCWGC 2 cut(s) 1029, 1328
ApoI RAATTY 1 cut(s) 1114
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
Asp700I GAANNNNTTC 2 cut(s) 693, 1267
AspLEI GCGC 1 cut(s) 1251
AspS9I GGNCC 5 cut(s) 510, 719, 1090, 1108, 1315
AsuHPI GGTGA 1 cut(s) 1345
AvaII GGWCC 4 cut(s) 510, 719, 1108, 1315
AxyI CCTNAGG 1 cut(s) 975
BanI GGYRCC 1 cut(s) 1346
BbsI GAAGAC 1 cut(s) 1227
BbvI GCAGC 2 cut(s) 1041, 1315
BccI CCATC 2 cut(s) 517, 1358
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 2 cut(s) 478, 1094
BcoDI GTCTC 2 cut(s) 300, 414
BfaI CTAG 4 cut(s) 147, 431, 624, 933
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 1252
BfrI CTTAAG 1 cut(s) 991
BisI GCNGC 3 cut(s) 144, 1030, 1329
BlsI GCNGC 3 cut(s) 145, 1031, 1330
Bme1390I CCNGG 2 cut(s) 478, 1094
Bme18I GGWCC 4 cut(s) 510, 719, 1108, 1315
BmgT120I GGNCC 5 cut(s) 510, 719, 1090, 1108, 1315
BmiI GGNNCC 3 cut(s) 620, 1018, 1348
BmrFI CCNGG 2 cut(s) 478, 1094
BpiI GAAGAC 1 cut(s) 1227
Bpu10I CCTNAGC 1 cut(s) 339
Bsa29I ATCGAT 1 cut(s) 612
BsaAI YACGTR 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 4 cut(s) 162, 477, 801, 1092
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 1194, 1324
Bse1I ACTGG 3 cut(s) 44, 702, 1284
Bse21I CCTNAGG 1 cut(s) 975
BseBI CCWGG 2 cut(s) 478, 1094
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 4 cut(s) 162, 477, 801, 1092
BseGI GGATG 5 cut(s) 97, 202, 587, 985, 1102
BseLI CCNNNNNNNGG 3 cut(s) 168, 1194, 1324
BseMII CTCAG 4 cut(s) 330, 384, 624, 1205
BseNI ACTGG 3 cut(s) 44, 702, 1284
BseRI GAGGAG 2 cut(s) 315, 790
BseXI GCAGC 2 cut(s) 1041, 1315
BshFI GGCC 2 cut(s) 161, 1091
BshNI GGYRCC 1 cut(s) 1346
BshVI ATCGAT 1 cut(s) 612
BslI CCNNNNNNNGG 3 cut(s) 168, 1194, 1324
BsmAI GTCTC 2 cut(s) 300, 414
BsmI GAATGC 2 cut(s) 890, 1010
BsnI GGCC 2 cut(s) 161, 1091
Bso31I GGTCTC 1 cut(s) 300
Bsp143I GATC 4 cut(s) 94, 744, 1278, 1298
BspACI CCGC 4 cut(s) 143, 172, 850, 1049
BspANI GGCC 2 cut(s) 161, 1091
BspCNI CTCAG 4 cut(s) 331, 385, 625, 1206
BspDI ATCGAT 1 cut(s) 612
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 3 cut(s) 620, 1018, 1348
BspPI GGATC 2 cut(s) 752, 1293
BspT107I GGYRCC 1 cut(s) 1346
BspTI CTTAAG 1 cut(s) 991
BspTNI GGTCTC 1 cut(s) 300
BsrI ACTGG 3 cut(s) 44, 702, 1284
BssECI CCNNGG 4 cut(s) 162, 477, 801, 1092
BssMI GATC 4 cut(s) 94, 744, 1278, 1298
BssNAI GTATAC 1 cut(s) 1174
BssT1I CCWWGG 1 cut(s) 162
Bst1107I GTATAC 1 cut(s) 1174
Bst2UI CCWGG 2 cut(s) 478, 1094
Bst4CI ACNGT 3 cut(s) 358, 1151, 1268
Bst6I CTCTTC 4 cut(s) 186, 537, 682, 807
BstAFI CTTAAG 1 cut(s) 991
BstBAI YACGTR 1 cut(s) 237
BstC8I GCNNGC 5 cut(s) 455, 854, 890, 964, 1034
BstDEI CTNAG 7 cut(s) 63, 339, 393, 633, 975, 1214, 1311
BstF5I GGATG 5 cut(s) 97, 202, 587, 985, 1102
BstH2I RGCGCY 1 cut(s) 1252
BstHHI GCGC 1 cut(s) 1251
BstKTI GATC 4 cut(s) 97, 747, 1281, 1301
BstMAI GTCTC 2 cut(s) 300, 414
BstMBI GATC 4 cut(s) 94, 744, 1278, 1298
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 478, 1094
BstNSI RCATGY 1 cut(s) 564
BstSCI CCNGG 2 cut(s) 476, 1092
BstSFI CTRYAG 1 cut(s) 498
BstV1I GCAGC 2 cut(s) 1041, 1315
BstV2I GAAGAC 1 cut(s) 1227
BstX2I RGATCY 1 cut(s) 1298
BstYI RGATCY 1 cut(s) 1298
BstZ17I GTATAC 1 cut(s) 1174
Bsu15I ATCGAT 1 cut(s) 612
Bsu36I CCTNAGG 1 cut(s) 975
BsuRI GGCC 2 cut(s) 161, 1091
BsuTUI ATCGAT 1 cut(s) 612
BtsCI GGATG 5 cut(s) 97, 202, 587, 985, 1102
Cac8I GCNNGC 5 cut(s) 455, 854, 890, 964, 1034
CciI TCATGA 1 cut(s) 372
CfoI GCGC 1 cut(s) 1251
Cfr13I GGNCC 5 cut(s) 510, 719, 1090, 1108, 1315
ClaI ATCGAT 1 cut(s) 612
Csp6I GTAC 3 cut(s) 408, 1255, 1287
CviAII CATG 4 cut(s) 373, 485, 505, 561
CviQI GTAC 3 cut(s) 408, 1255, 1287
DdeI CTNAG 7 cut(s) 63, 339, 393, 633, 975, 1214, 1311
DpnI GATC 4 cut(s) 96, 746, 1280, 1300
DpnII GATC 4 cut(s) 94, 744, 1278, 1298
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 4 cut(s) 186, 537, 682, 807
EarI CTCTTC 4 cut(s) 186, 537, 682, 807
EciI GGCGGA 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 4 cut(s) 510, 719, 1108, 1315
Eco81I CCTNAGG 1 cut(s) 975
EcoO109I RGGNCCY 1 cut(s) 1108
EcoRII CCWGG 2 cut(s) 476, 1092
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 1010
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 4 cut(s) 376, 488, 508, 564
FalI AAGNNNNNCTT 4 cut(s) 114, 146, 456, 488
FatI CATG 4 cut(s) 372, 484, 504, 560
FblI GTMKAC 1 cut(s) 1173
Fnu4HI GCNGC 3 cut(s) 144, 1030, 1329
FokI GGATG 5 cut(s) 104, 209, 574, 992, 1109
Fsp4HI GCNGC 3 cut(s) 144, 1030, 1329
FspBI CTAG 4 cut(s) 147, 431, 624, 933
GlaI GCGC 1 cut(s) 1250
GluI GCNGC 3 cut(s) 144, 1030, 1329
HaeII RGCGCY 1 cut(s) 1252
HaeIII GGCC 2 cut(s) 161, 1091
HhaI GCGC 1 cut(s) 1251
Hin1II CATG 4 cut(s) 376, 488, 508, 564
Hin6I GCGC 1 cut(s) 1249
HinP1I GCGC 1 cut(s) 1249
HincII GTYRAC 1 cut(s) 1185
HindII GTYRAC 1 cut(s) 1185
HinfI GANTC 3 cut(s) 182, 929, 969
HphI GGTGA 1 cut(s) 1345
Hpy166II GTNNAC 5 cut(s) 128, 510, 985, 1174, 1185
Hpy188I TCNGA 5 cut(s) 187, 305, 394, 634, 805
Hpy188III TCNNGA 6 cut(s) 23, 31, 338, 373, 650, 1014
Hpy8I GTNNAC 5 cut(s) 128, 510, 985, 1174, 1185
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 4 cut(s) 29, 116, 428, 1076
HpyCH4III ACNGT 3 cut(s) 358, 1151, 1268
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 9 cut(s) 354, 364, 560, 755, 880, 892, 1008, 1331, 1342
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 7 cut(s) 63, 339, 393, 633, 975, 1214, 1311
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 4 cut(s) 376, 488, 508, 564
HspAI GCGC 1 cut(s) 1249
Kzo9I GATC 4 cut(s) 94, 744, 1278, 1298
LmnI GCTCC 2 cut(s) 777, 1016
Lsp1109I GCAGC 2 cut(s) 1041, 1315
MaeI CTAG 4 cut(s) 147, 431, 624, 933
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 563, 905
MalI GATC 4 cut(s) 96, 746, 1280, 1300
MboI GATC 4 cut(s) 94, 744, 1278, 1298
MboII GAAGA 9 cut(s) 85, 131, 203, 554, 669, 824, 955, 1150, 1232
MflI RGATCY 1 cut(s) 1298
MluCI AATT 8 cut(s) 388, 517, 641, 831, 996, 1021, 1114, 1192
Mph1103I ATGCAT 1 cut(s) 1010
MroXI GAANNNNTTC 2 cut(s) 693, 1267
MseI TTAA 5 cut(s) 345, 516, 606, 638, 992
MslI CAYNNNNRTG 1 cut(s) 559
MspCI CTTAAG 1 cut(s) 991
MspR9I CCNGG 2 cut(s) 478, 1094
Mva1269I GAATGC 2 cut(s) 890, 1010
MvaI CCWGG 2 cut(s) 478, 1094
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 4 cut(s) 94, 744, 1278, 1298
NlaIII CATG 4 cut(s) 376, 488, 508, 564
NlaIV GGNNCC 3 cut(s) 620, 1018, 1348
NmuCI GTSAC 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 1010
NspI RCATGY 1 cut(s) 564
PagI TCATGA 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 2 cut(s) 890, 1010
PdmI GAANNNNTTC 2 cut(s) 693, 1267
PfeI GAWTC 3 cut(s) 182, 929, 969
PkrI GCNGC 3 cut(s) 145, 1031, 1330
Ppu21I YACGTR 1 cut(s) 237
PpuMI RGGWCCY 1 cut(s) 1108
PsiI TTATAA 2 cut(s) 830, 1086
Psp5II RGGWCCY 1 cut(s) 1108
Psp6I CCWGG 2 cut(s) 476, 1092
PspGI CCWGG 2 cut(s) 476, 1092
PspN4I GGNNCC 3 cut(s) 620, 1018, 1348
PspPI GGNCC 5 cut(s) 510, 719, 1090, 1108, 1315
PspPPI RGGWCCY 1 cut(s) 1108
PsuI RGATCY 1 cut(s) 1298
RsaI GTAC 3 cut(s) 409, 1256, 1288
RsaNI GTAC 3 cut(s) 408, 1255, 1287
RseI CAYNNNNRTG 1 cut(s) 559
SaqAI TTAA 5 cut(s) 345, 516, 606, 638, 992
SatI GCNGC 3 cut(s) 144, 1030, 1329
Sau3AI GATC 4 cut(s) 94, 744, 1278, 1298
Sau96I GGNCC 5 cut(s) 510, 719, 1090, 1108, 1315
ScrFI CCNGG 2 cut(s) 478, 1094
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 4 cut(s) 510, 719, 1108, 1315
SmiMI CAYNNNNRTG 1 cut(s) 559
SmlI CTYRAG 1 cut(s) 991
SmoI CTYRAG 1 cut(s) 991
Sse9I AATT 8 cut(s) 388, 517, 641, 831, 996, 1021, 1114, 1192
SsiI CCGC 4 cut(s) 143, 172, 850, 1049
SspI AATATT 1 cut(s) 733
SspMI CTAG 4 cut(s) 147, 431, 624, 933
StyD4I CCNGG 2 cut(s) 476, 1092
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 358, 1151, 1268
TaiI ACGT 1 cut(s) 239
TaqI TCGA 5 cut(s) 12, 24, 30, 612, 680
TaqII GACCGA 1 cut(s) 1202
TasI AATT 8 cut(s) 388, 517, 641, 831, 996, 1021, 1114, 1192
TatI WGTACW 2 cut(s) 1254, 1286
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 3 cut(s) 182, 929, 969
Tru1I TTAA 5 cut(s) 345, 516, 606, 638, 992
Tru9I TTAA 5 cut(s) 345, 516, 606, 638, 992
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 2 cut(s) 1029, 1328
Tsp45I GTSAC 1 cut(s) 563
TspGWI ACGGA 3 cut(s) 425, 432, 1307
Vha464I CTTAAG 1 cut(s) 991
VpaK11BI GGWCC 4 cut(s) 510, 719, 1108, 1315
XapI RAATTY 1 cut(s) 1114
XceI RCATGY 1 cut(s) 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 1173
XmnI GAANNNNTTC 2 cut(s) 693, 1267
XspI CTAG 4 cut(s) 147, 431, 624, 933
Zsp2I ATGCAT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.