Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G08530 AT3G11130 |
| fragaria_vesca | FvH4_3g39020 FvH4_7g24660 FvH4_7g24660 |
| malus_domestica | MD01G1154700.v1.1 MD03G1065300.v1.1 MD07G1223800.v1.1 MD11G1070100.v1.1 |
| prunus_persica | Prupe.2G252300_v2.0.a1 Prupe.6G054300_v2.0.a1 Prupe.6G054300_v2.0.a1 Prupe.6G054300_v2.0.a1 Prupe.6G054300_v2.0.a1 |
| pyrus_communis | pycom01g17210 pycom03g05230 pycom07g20230 pycom07g20240 pycom11g05860 |
| rosa_chinensis | RchiOBHm_Chr1g0370491 RchiOBHm_Chr5g0070331 |
| rosa_laevigata | RLG00000027035 RLG00000036125 |
| rosa_multiflora | Rmu_sc0002558.1_g000009 Rmu_sc0007961.1_g000022 |
| rosa_roxburghii | Rroxscaffold_1G00010850 Rroxscaffold_4G00286510 |
| rosa_rugosa | Rorug01G0357300 Rorug05G0404900 |
| rosa_samantha | Rh1AG365800 Rh1BG329500 Rh1CG341800 Rh1CG343600 Rh5AG460600 Rh5BG478900 Rh5CG503100 Rh5DG490800 |
| rosa_wichuraiana | Rw1G032230 Rw5G042930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4017 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 560 |
| Acc36I | ACCTGC | 1 cut(s) | 2422 |
| Acc65I | GGTACC | 1 cut(s) | 2937 |
| AccB1I | GGYRCC | 2 cut(s) | 173, 2937 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1455, 2884, 3074 |
| AccI | GTMKAC | 1 cut(s) | 2979 |
| AccII | CGCG | 3 cut(s) | 1786, 2181, 3405 |
| AccIII | TCCGGA | 2 cut(s) | 229, 367 |
| AcoI | YGGCCR | 1 cut(s) | 1272 |
| AcsI | RAATTY | 8 cut(s) | 668, 959, 1141, 2281, 2515, 3266, 3282, 3581 |
| AcuI | CTGAAG | 7 cut(s) | 411, 570, 1118, 1196, 1202, 1493, 1968 |
| AcyI | GRCGYC | 1 cut(s) | 4080 |
| AfaI | GTAC | 9 cut(s) | 474, 642, 649, 719, 1607, 2091, 2939, 3160, 4289 |
| AflIII | ACRYGT | 3 cut(s) | 2092, 3997, 4389 |
| AjiI | CACGTC | 1 cut(s) | 3998 |
| AjnI | CCWGG | 8 cut(s) | 181, 541, 914, 1047, 1897, 2298, 2799, 3306 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1268, 1300 |
| Alw21I | GWGCWC | 5 cut(s) | 1634, 2511, 3369, 3477, 3699 |
| Alw26I | GTCTC | 8 cut(s) | 326, 1083, 2401, 3503, 3988, 4082, 4184, 4322 |
| Alw44I | GTGCAC | 1 cut(s) | 3695 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 341, 2444, 2551, 4405 |
| Ama87I | CYCGRG | 1 cut(s) | 3771 |
| Aor13HI | TCCGGA | 2 cut(s) | 229, 367 |
| AoxI | GGCC | 7 cut(s) | 1272, 2301, 2627, 2811, 3144, 4205, 4528 |
| ApaI | GGGCCC | 1 cut(s) | 4532 |
| ApaLI | GTGCAC | 1 cut(s) | 3695 |
| ApoI | RAATTY | 8 cut(s) | 668, 959, 1141, 2281, 2515, 3266, 3282, 3581 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1207, 1239, 3784, 3816 |
| AseI | ATTAAT | 2 cut(s) | 1797, 3372 |
| Asp718I | GGTACC | 1 cut(s) | 2937 |
| AspLEI | GCGC | 3 cut(s) | 1786, 3407, 3754 |
| AspS9I | GGNCC | 7 cut(s) | 2347, 2467, 2627, 2812, 3144, 4528, 4529 |
| AsuC2I | CCSGG | 3 cut(s) | 2774, 3205, 4428 |
| AsuHPI | GGTGA | 4 cut(s) | 2974, 3035, 4118, 4354 |
| AsuNHI | GCTAGC | 1 cut(s) | 823 |
| AvaI | CYCGRG | 1 cut(s) | 3771 |
| AvaII | GGWCC | 2 cut(s) | 2347, 2467 |
| AxyI | CCTNAGG | 1 cut(s) | 1416 |
| BaeGI | GKGCMC | 3 cut(s) | 178, 3699, 4532 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 456, 489 |
| BalI | TGGCCA | 1 cut(s) | 1274 |
| BamHI | GGATCC | 2 cut(s) | 370, 1642 |
| BanI | GGYRCC | 2 cut(s) | 173, 2937 |
| BanII | GRGCYC | 7 cut(s) | 1462, 1634, 2004, 2426, 2973, 3369, 4532 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2925, 2957 |
| BauI | CACGAG | 1 cut(s) | 1716 |
| BbsI | GAAGAC | 3 cut(s) | 558, 878, 2027 |
| Bbv12I | GWGCWC | 5 cut(s) | 1634, 2511, 3369, 3477, 3699 |
| BbvCI | CCTCAGC | 1 cut(s) | 3261 |
| BccI | CCATC | 8 cut(s) | 199, 1756, 2590, 2618, 2941, 4026, 4471, 4480 |
| BceAI | ACGGC | 1 cut(s) | 2741 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1840, 1874, 4262, 4296 |
| BciT130I | CCWGG | 8 cut(s) | 183, 543, 916, 1049, 1899, 2300, 2801, 3308 |
| BclI | TGATCA | 2 cut(s) | 2386, 4108 |
| BcnI | CCSGG | 3 cut(s) | 2774, 3205, 4428 |
| BcoDI | GTCTC | 8 cut(s) | 326, 1083, 2401, 3503, 3988, 4082, 4184, 4322 |
| BfaI | CTAG | 6 cut(s) | 329, 824, 857, 1238, 3164, 3392 |
| BfmI | CTRYAG | 8 cut(s) | 342, 609, 621, 2543, 2649, 3685, 3921, 4271 |
| BfuAI | ACCTGC | 1 cut(s) | 2422 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3152 |
| BglII | AGATCT | 3 cut(s) | 214, 862, 1477 |
| BlpI | GCTNAGC | 1 cut(s) | 4380 |
| BmcAI | AGTACT | 2 cut(s) | 642, 719 |
| Bme18I | GGWCC | 2 cut(s) | 2347, 2467 |
| BmeT110I | CYCGRG | 1 cut(s) | 3771 |
| BmgBI | CACGTC | 1 cut(s) | 3998 |
| BmgT120I | GGNCC | 7 cut(s) | 2347, 2467, 2627, 2812, 3144, 4528, 4529 |
| BmiI | GGNNCC | 7 cut(s) | 175, 372, 572, 1644, 2798, 2939, 4530 |
| BmrI | ACTGGG | 2 cut(s) | 1559, 2872 |
| BmtI | GCTAGC | 1 cut(s) | 827 |
| BmuI | ACTGGG | 2 cut(s) | 1559, 2872 |
| BpiI | GAAGAC | 3 cut(s) | 558, 878, 2027 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4079, 4111 |
| BpmI | CTGGAG | 2 cut(s) | 1618, 2282 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1197, 2343, 2427, 2904, 3261 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4380 |
| BpuEI | CTTGAG | 6 cut(s) | 1484, 1648, 3158, 3989, 4007, 4241 |
| BpuMI | CCSGG | 3 cut(s) | 2774, 3205, 4428 |
| BsaAI | YACGTR | 1 cut(s) | 2897 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2919 |
| BsaHI | GRCGYC | 1 cut(s) | 4080 |
| BsaJI | CCNNGG | 6 cut(s) | 915, 1047, 1048, 2808, 2973, 4083 |
| BsaWI | WCCGGW | 3 cut(s) | 229, 367, 3270 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 852, 882, 1616, 1646 |
| Bse1I | ACTGG | 7 cut(s) | 1491, 1554, 1635, 1690, 1994, 2878, 3548 |
| Bse21I | CCTNAGG | 1 cut(s) | 1416 |
| Bse3DI | GCAATG | 2 cut(s) | 2252, 4044 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2919 |
| BseAI | TCCGGA | 2 cut(s) | 229, 367 |
| BseBI | CCWGG | 8 cut(s) | 183, 543, 916, 1049, 1899, 2300, 2801, 3308 |
| BseDI | CCNNGG | 6 cut(s) | 915, 1047, 1048, 2808, 2973, 4083 |
| BseJI | GATNNNNATC | 1 cut(s) | 2919 |
| BseMI | GCAATG | 2 cut(s) | 2252, 4044 |
| BseNI | ACTGG | 7 cut(s) | 1491, 1554, 1635, 1690, 1994, 2878, 3548 |
| BseRI | GAGGAG | 3 cut(s) | 3905, 3908, 4376 |
| BseSI | GKGCMC | 3 cut(s) | 178, 3699, 4532 |
| BseYI | CCCAGC | 2 cut(s) | 177, 692 |
| BsgI | GTGCAG | 2 cut(s) | 1541, 4404 |
| Bsh1236I | CGCG | 3 cut(s) | 1786, 2181, 3405 |
| BshFI | GGCC | 7 cut(s) | 1274, 2303, 2629, 2813, 3146, 4207, 4530 |
| BshNI | GGYRCC | 2 cut(s) | 173, 2937 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1634, 2511, 3369, 3477, 3699 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3771 |
| BsiSI | CCGG | 7 cut(s) | 230, 368, 2773, 3205, 3271, 4204, 4427 |
| BslFI | GGGAC | 3 cut(s) | 519, 1453, 1773 |
| BsmAI | GTCTC | 8 cut(s) | 326, 1083, 2401, 3503, 3988, 4082, 4184, 4322 |
| BsmBI | CGTCTC | 2 cut(s) | 3503, 3988 |
| BsmFI | GGGAC | 3 cut(s) | 519, 1453, 1773 |
| BsmI | GAATGC | 3 cut(s) | 2768, 4256, 4521 |
| BsnI | GGCC | 7 cut(s) | 1274, 2303, 2629, 2813, 3146, 4207, 4530 |
| BsoBI | CYCGRG | 1 cut(s) | 3771 |
| Bsp120I | GGGCCC | 1 cut(s) | 4528 |
| Bsp13I | TCCGGA | 2 cut(s) | 229, 367 |
| Bsp1407I | TGTACA | 1 cut(s) | 2089 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4380 |
| Bsp19I | CCATGG | 1 cut(s) | 4083 |
| BspANI | GGCC | 7 cut(s) | 1274, 2303, 2629, 2813, 3146, 4207, 4530 |
| BspEI | TCCGGA | 2 cut(s) | 229, 367 |
| BspFNI | CGCG | 3 cut(s) | 1786, 2181, 3405 |
| BspHI | TCATGA | 2 cut(s) | 2923, 4111 |
| BspLI | GGNNCC | 7 cut(s) | 175, 372, 572, 1644, 2798, 2939, 4530 |
| BspMAI | CTGCAG | 4 cut(s) | 346, 613, 625, 4275 |
| BspMI | ACCTGC | 1 cut(s) | 2422 |
| BspOI | GCTAGC | 1 cut(s) | 827 |
| BspQI | GCTCTTC | 1 cut(s) | 846 |
| BspT107I | GGYRCC | 2 cut(s) | 173, 2937 |
| BsrDI | GCAATG | 2 cut(s) | 2252, 4044 |
| BsrGI | TGTACA | 1 cut(s) | 2089 |
| BsrI | ACTGG | 7 cut(s) | 1491, 1554, 1635, 1690, 1994, 2878, 3548 |
| BssECI | CCNNGG | 6 cut(s) | 915, 1047, 1048, 2808, 2973, 4083 |
| BssNI | GRCGYC | 1 cut(s) | 4080 |
| BssSI | CACGAG | 1 cut(s) | 1716 |
| BssT1I | CCWWGG | 3 cut(s) | 2808, 2973, 4083 |
| Bst2BI | CACGAG | 1 cut(s) | 1716 |
| Bst2UI | CCWGG | 8 cut(s) | 183, 543, 916, 1049, 1899, 2300, 2801, 3308 |
| Bst6I | CTCTTC | 5 cut(s) | 523, 846, 1992, 3027, 3318 |
| BstACI | GRCGYC | 1 cut(s) | 4080 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 53, 62, 617, 944 |
| BstAUI | TGTACA | 1 cut(s) | 2089 |
| BstBAI | YACGTR | 1 cut(s) | 2897 |
| BstDSI | CCRYGG | 1 cut(s) | 4083 |
| BstFNI | CGCG | 3 cut(s) | 1786, 2181, 3405 |
| BstHHI | GCGC | 3 cut(s) | 1786, 3407, 3754 |
| BstMAI | GTCTC | 8 cut(s) | 326, 1083, 2401, 3503, 3988, 4082, 4184, 4322 |
| BstNI | CCWGG | 8 cut(s) | 183, 543, 916, 1049, 1899, 2300, 2801, 3308 |
| BstNSI | RCATGY | 8 cut(s) | 53, 161, 1205, 2096, 3252, 3640, 4095, 4393 |
| BstSFI | CTRYAG | 8 cut(s) | 342, 609, 621, 2543, 2649, 3685, 3921, 4271 |
| BstSLI | GKGCMC | 3 cut(s) | 178, 3699, 4532 |
| BstUI | CGCG | 3 cut(s) | 1786, 2181, 3405 |
| BstV2I | GAAGAC | 3 cut(s) | 558, 878, 2027 |
| BstX2I | RGATCY | 7 cut(s) | 214, 370, 862, 1042, 1477, 1642, 2209 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2593, 3627 |
| BstYI | RGATCY | 7 cut(s) | 214, 370, 862, 1042, 1477, 1642, 2209 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1416 |
| BsuRI | GGCC | 7 cut(s) | 1274, 2303, 2629, 2813, 3146, 4207, 4530 |
| BtgI | CCRYGG | 1 cut(s) | 4083 |
| BtrI | CACGTC | 1 cut(s) | 3998 |
| BtsIMutI | CAGTG | 6 cut(s) | 450, 882, 1642, 2989, 3337, 3541 |
| BveI | ACCTGC | 1 cut(s) | 2422 |
| CaiI | CAGNNNCTG | 4 cut(s) | 341, 2444, 2551, 4405 |
| CciI | TCATGA | 2 cut(s) | 2923, 4111 |
| CfoI | GCGC | 3 cut(s) | 1786, 3407, 3754 |
| Cfr13I | GGNCC | 7 cut(s) | 2347, 2467, 2627, 2812, 3144, 4528, 4529 |
| CseI | GACGC | 2 cut(s) | 1775, 4088 |
| Csp6I | GTAC | 9 cut(s) | 473, 641, 648, 718, 1606, 2090, 2938, 3159, 4288 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 412, 447, 693, 728, 2463, 2498 |
| CviQI | GTAC | 9 cut(s) | 473, 641, 648, 718, 1606, 2090, 2938, 3159, 4288 |
| DraI | TTTAAA | 2 cut(s) | 73, 3873 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 560 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 560 |
| EaeI | YGGCCR | 1 cut(s) | 1272 |
| Eam1104I | CTCTTC | 5 cut(s) | 523, 846, 1992, 3027, 3318 |
| EarI | CTCTTC | 5 cut(s) | 523, 846, 1992, 3027, 3318 |
| Ecl136II | GAGCTC | 2 cut(s) | 1632, 3367 |
| Eco130I | CCWWGG | 3 cut(s) | 2808, 2973, 4083 |
| Eco24I | GRGCYC | 7 cut(s) | 1462, 1634, 2004, 2426, 2973, 3369, 4532 |
| Eco32I | GATATC | 2 cut(s) | 267, 1651 |
| Eco47I | GGWCC | 2 cut(s) | 2347, 2467 |
| Eco53kI | GAGCTC | 2 cut(s) | 1632, 3367 |
| Eco57I | CTGAAG | 7 cut(s) | 411, 570, 1118, 1196, 1202, 1493, 1968 |
| Eco81I | CCTNAGG | 1 cut(s) | 1416 |
| Eco88I | CYCGRG | 1 cut(s) | 3771 |
| EcoICRI | GAGCTC | 2 cut(s) | 1632, 3367 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2347, 4529 |
| EcoRI | GAATTC | 2 cut(s) | 2281, 3266 |
| EcoRII | CCWGG | 8 cut(s) | 181, 541, 914, 1047, 1897, 2298, 2799, 3306 |
| EcoRV | GATATC | 2 cut(s) | 267, 1651 |
| EcoT14I | CCWWGG | 3 cut(s) | 2808, 2973, 4083 |
| EcoT22I | ATGCAT | 1 cut(s) | 3001 |
| EcoT38I | GRGCYC | 7 cut(s) | 1462, 1634, 2004, 2426, 2973, 3369, 4532 |
| ErhI | CCWWGG | 3 cut(s) | 2808, 2973, 4083 |
| Esp3I | CGTCTC | 2 cut(s) | 3503, 3988 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1758, 1790 |
| FaqI | GGGAC | 3 cut(s) | 519, 1453, 1773 |
| FauI | CCCGC | 1 cut(s) | 1313 |
| FauNDI | CATATG | 2 cut(s) | 3001, 3411 |
| FbaI | TGATCA | 2 cut(s) | 2386, 4108 |
| FblI | GTMKAC | 1 cut(s) | 2979 |
| FriOI | GRGCYC | 7 cut(s) | 1462, 1634, 2004, 2426, 2973, 3369, 4532 |
| FspBI | CTAG | 6 cut(s) | 329, 824, 857, 1238, 3164, 3392 |
| GlaI | GCGC | 3 cut(s) | 1785, 3406, 3753 |
| GsaI | CCCAGC | 2 cut(s) | 181, 696 |
| GsuI | CTGGAG | 2 cut(s) | 1618, 2282 |
| HaeIII | GGCC | 7 cut(s) | 1274, 2303, 2629, 2813, 3146, 4207, 4530 |
| HapII | CCGG | 7 cut(s) | 230, 368, 2773, 3205, 3271, 4204, 4427 |
| HgaI | GACGC | 2 cut(s) | 1775, 4088 |
| HhaI | GCGC | 3 cut(s) | 1786, 3407, 3754 |
| Hin1I | GRCGYC | 1 cut(s) | 4080 |
| Hin6I | GCGC | 3 cut(s) | 1784, 3405, 3752 |
| HinP1I | GCGC | 3 cut(s) | 1784, 3405, 3752 |
| HincII | GTYRAC | 2 cut(s) | 424, 735 |
| HindII | GTYRAC | 2 cut(s) | 424, 735 |
| HindIII | AAGCTT | 7 cut(s) | 302, 393, 836, 1772, 3464, 3867, 3965 |
| HpaI | GTTAAC | 1 cut(s) | 735 |
| HpaII | CCGG | 7 cut(s) | 230, 368, 2773, 3205, 3271, 4204, 4427 |
| HphI | GGTGA | 4 cut(s) | 2974, 3035, 4118, 4354 |
| HpyCH4IV | ACGT | 5 cut(s) | 28, 778, 906, 2896, 3997 |
| HpySE526I | ACGT | 5 cut(s) | 28, 778, 906, 2896, 3997 |
| Hsp92I | GRCGYC | 1 cut(s) | 4080 |
| HspAI | GCGC | 3 cut(s) | 1784, 3405, 3752 |
| Kpn2I | TCCGGA | 2 cut(s) | 229, 367 |
| KpnI | GGTACC | 1 cut(s) | 2941 |
| Ksp22I | TGATCA | 2 cut(s) | 2386, 4108 |
| KspAI | GTTAAC | 1 cut(s) | 735 |
| LguI | GCTCTTC | 1 cut(s) | 846 |
| LmnI | GCTCC | 9 cut(s) | 19, 1637, 1705, 1912, 2059, 2514, 2796, 3472, 4453 |
| MaeI | CTAG | 6 cut(s) | 329, 824, 857, 1238, 3164, 3392 |
| MaeII | ACGT | 5 cut(s) | 28, 778, 906, 2896, 3997 |
| MfeI | CAATTG | 2 cut(s) | 468, 1407 |
| MflI | RGATCY | 7 cut(s) | 214, 370, 862, 1042, 1477, 1642, 2209 |
| MlsI | TGGCCA | 1 cut(s) | 1274 |
| MluNI | TGGCCA | 1 cut(s) | 1274 |
| MlyI | GAGTC | 8 cut(s) | 501, 1395, 1435, 1708, 2598, 2858, 3285, 4324 |
| MmeI | TCCRAC | 5 cut(s) | 153, 385, 973, 1152, 2709 |
| Mox20I | TGGCCA | 1 cut(s) | 1274 |
| Mph1103I | ATGCAT | 1 cut(s) | 3001 |
| MroI | TCCGGA | 2 cut(s) | 229, 367 |
| MscI | TGGCCA | 1 cut(s) | 1274 |
| MslI | CAYNNNNRTG | 3 cut(s) | 3044, 3308, 3605 |
| Msp20I | TGGCCA | 1 cut(s) | 1274 |
| MspA1I | CMGCKG | 3 cut(s) | 389, 568, 3857 |
| MspI | CCGG | 7 cut(s) | 230, 368, 2773, 3205, 3271, 4204, 4427 |
| MunI | CAATTG | 2 cut(s) | 468, 1407 |
| Mva1269I | GAATGC | 3 cut(s) | 2768, 4256, 4521 |
| MvaI | CCWGG | 8 cut(s) | 183, 543, 916, 1049, 1899, 2300, 2801, 3308 |
| MvnI | CGCG | 3 cut(s) | 1786, 2181, 3405 |
| NciI | CCSGG | 3 cut(s) | 2774, 3205, 4428 |
| NcoI | CCATGG | 1 cut(s) | 4083 |
| NdeI | CATATG | 2 cut(s) | 3001, 3411 |
| NheI | GCTAGC | 1 cut(s) | 823 |
| NlaIV | GGNNCC | 7 cut(s) | 175, 372, 572, 1644, 2798, 2939, 4530 |
| NmuCI | GTSAC | 5 cut(s) | 774, 1240, 1711, 3023, 3800 |
| NsiI | ATGCAT | 1 cut(s) | 3001 |
| NspI | RCATGY | 8 cut(s) | 53, 161, 1205, 2096, 3252, 3640, 4095, 4393 |
| PaeI | GCATGC | 1 cut(s) | 1205 |
| PagI | TCATGA | 2 cut(s) | 2923, 4111 |
| PasI | CCCWGGG | 1 cut(s) | 1048 |
| PciI | ACATGT | 2 cut(s) | 2092, 4389 |
| PciSI | GCTCTTC | 1 cut(s) | 846 |
| PctI | GAATGC | 3 cut(s) | 2768, 4256, 4521 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1455, 2884, 3074 |
| PfoI | TCCNGGA | 2 cut(s) | 1897, 4426 |
| PleI | GAGTC | 8 cut(s) | 501, 1394, 1435, 1708, 2597, 2857, 3285, 4324 |
| PpsI | GAGTC | 8 cut(s) | 501, 1394, 1435, 1708, 2597, 2857, 3285, 4324 |
| Ppu21I | YACGTR | 1 cut(s) | 2897 |
| PpuMI | RGGWCCY | 1 cut(s) | 2347 |
| PscI | ACATGT | 2 cut(s) | 2092, 4389 |
| PshBI | ATTAAT | 2 cut(s) | 1797, 3372 |
| PsiI | TTATAA | 1 cut(s) | 4017 |
| Psp124BI | GAGCTC | 2 cut(s) | 1634, 3369 |
| Psp5II | RGGWCCY | 1 cut(s) | 2347 |
| Psp6I | CCWGG | 8 cut(s) | 181, 541, 914, 1047, 1897, 2298, 2799, 3306 |
| PspFI | CCCAGC | 2 cut(s) | 177, 692 |
| PspGI | CCWGG | 8 cut(s) | 181, 541, 914, 1047, 1897, 2298, 2799, 3306 |
| PspN4I | GGNNCC | 7 cut(s) | 175, 372, 572, 1644, 2798, 2939, 4530 |
| PspOMI | GGGCCC | 1 cut(s) | 4528 |
| PspPI | GGNCC | 7 cut(s) | 2347, 2467, 2627, 2812, 3144, 4528, 4529 |
| PspPPI | RGGWCCY | 1 cut(s) | 2347 |
| PstI | CTGCAG | 4 cut(s) | 346, 613, 625, 4275 |
| PstNI | CAGNNNCTG | 4 cut(s) | 341, 2444, 2551, 4405 |
| PsuI | RGATCY | 7 cut(s) | 214, 370, 862, 1042, 1477, 1642, 2209 |
| PvuII | CAGCTG | 2 cut(s) | 389, 3857 |
| RsaI | GTAC | 9 cut(s) | 474, 642, 649, 719, 1607, 2091, 2939, 3160, 4289 |
| RsaNI | GTAC | 9 cut(s) | 473, 641, 648, 718, 1606, 2090, 2938, 3159, 4288 |
| RseI | CAYNNNNRTG | 3 cut(s) | 3044, 3308, 3605 |
| SacI | GAGCTC | 2 cut(s) | 1634, 3369 |
| SapI | GCTCTTC | 1 cut(s) | 846 |
| Sau96I | GGNCC | 7 cut(s) | 2347, 2467, 2627, 2812, 3144, 4528, 4529 |
| ScaI | AGTACT | 2 cut(s) | 642, 719 |
| SchI | GAGTC | 8 cut(s) | 501, 1395, 1435, 1708, 2598, 2858, 3285, 4324 |
| SfcI | CTRYAG | 8 cut(s) | 342, 609, 621, 2543, 2649, 3685, 3921, 4271 |
| SinI | GGWCC | 2 cut(s) | 2347, 2467 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 3044, 3308, 3605 |
| SmlI | CTYRAG | 6 cut(s) | 1463, 1627, 3173, 3968, 3986, 4220 |
| SmoI | CTYRAG | 6 cut(s) | 1463, 1627, 3173, 3968, 3986, 4220 |
| SphI | GCATGC | 1 cut(s) | 1205 |
| SspI | AATATT | 1 cut(s) | 2195 |
| SspMI | CTAG | 6 cut(s) | 329, 824, 857, 1238, 3164, 3392 |
| SstI | GAGCTC | 2 cut(s) | 1634, 3369 |
| StyI | CCWWGG | 3 cut(s) | 2808, 2973, 4083 |
| TaiI | ACGT | 5 cut(s) | 31, 781, 909, 2899, 4000 |
| TaqI | TCGA | 4 cut(s) | 358, 1998, 3016, 4146 |
| TatI | WGTACW | 6 cut(s) | 640, 717, 1605, 2089, 3158, 4287 |
| TauI | GCSGC | 2 cut(s) | 1676, 3203 |
| TscAI | CASTG | 6 cut(s) | 457, 882, 1642, 2989, 3337, 3548 |
| TseFI | GTSAC | 5 cut(s) | 774, 1240, 1711, 3023, 3800 |
| Tsp45I | GTSAC | 5 cut(s) | 774, 1240, 1711, 3023, 3800 |
| TspGWI | ACGGA | 2 cut(s) | 635, 3797 |
| TspRI | CASTG | 6 cut(s) | 457, 882, 1642, 2989, 3337, 3548 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1455, 2884, 3074 |
| VneI | GTGCAC | 1 cut(s) | 3695 |
| VpaK11BI | GGWCC | 2 cut(s) | 2347, 2467 |
| VspI | ATTAAT | 2 cut(s) | 1797, 3372 |
| XapI | RAATTY | 8 cut(s) | 668, 959, 1141, 2281, 2515, 3266, 3282, 3581 |
| XceI | RCATGY | 8 cut(s) | 53, 161, 1205, 2096, 3252, 3640, 4095, 4393 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2311, 2881 |
| XmiI | GTMKAC | 1 cut(s) | 2979 |
| XspI | CTAG | 6 cut(s) | 329, 824, 857, 1238, 3164, 3392 |
| ZrmI | AGTACT | 2 cut(s) | 642, 719 |
| Zsp2I | ATGCAT | 1 cut(s) | 3001 |