Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G08530 AT3G11130 |
| fragaria_vesca | FvH4_3g39020 FvH4_7g24660 FvH4_7g24660 |
| malus_domestica | MD01G1154700.v1.1 MD03G1065300.v1.1 MD07G1223800.v1.1 MD11G1070100.v1.1 |
| prunus_persica | Prupe.2G252300_v2.0.a1 Prupe.6G054300_v2.0.a1 Prupe.6G054300_v2.0.a1 Prupe.6G054300_v2.0.a1 Prupe.6G054300_v2.0.a1 |
| pyrus_communis | pycom01g17210 pycom03g05230 pycom07g20230 pycom07g20240 pycom11g05860 |
| rosa_chinensis | RchiOBHm_Chr1g0370491 RchiOBHm_Chr5g0070331 |
| rosa_laevigata | RLG00000027035 RLG00000036125 |
| rosa_multiflora | Rmu_sc0002558.1_g000009 Rmu_sc0007961.1_g000022 |
| rosa_roxburghii | Rroxscaffold_1G00010850 Rroxscaffold_4G00286510 |
| rosa_rugosa | Rorug01G0357300 Rorug05G0404900 |
| rosa_samantha | Rh1AG365800 Rh1BG329500 Rh1CG341800 Rh1CG343600 Rh5AG460600 Rh5BG478900 Rh5CG503100 Rh5DG490800 |
| rosa_wichuraiana | Rw1G032230 Rw5G042930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2234, 2403 |
| Acc16I | TGCGCA | 1 cut(s) | 3096 |
| Acc36I | ACCTGC | 3 cut(s) | 229, 1275, 1354 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1600, 1645, 3152 |
| AccII | CGCG | 1 cut(s) | 1614 |
| AccIII | TCCGGA | 1 cut(s) | 2434 |
| AciI | CCGC | 7 cut(s) | 846, 952, 1157, 1281, 2506, 3165, 3227 |
| AclWI | GGATC | 5 cut(s) | 353, 366, 920, 1289, 2355 |
| AcsI | RAATTY | 1 cut(s) | 1751 |
| AcuI | CTGAAG | 4 cut(s) | 209, 684, 1225, 2358 |
| AcvI | CACGTG | 1 cut(s) | 2489 |
| AdeI | CACNNNGTG | 1 cut(s) | 2474 |
| AfaI | GTAC | 5 cut(s) | 380, 563, 807, 1085, 1637 |
| AflII | CTTAAG | 1 cut(s) | 211 |
| AflIII | ACRYGT | 6 cut(s) | 100, 808, 2486, 2488, 2713, 3105 |
| AjiI | CACGTC | 3 cut(s) | 503, 2368, 2714 |
| AjnI | CCWGG | 5 cut(s) | 613, 933, 1515, 2342, 3151 |
| AleI | CACNNNNGTG | 1 cut(s) | 1880 |
| Alw21I | GWGCWC | 6 cut(s) | 350, 1707, 2125, 2193, 2397, 2415 |
| Alw26I | GTCTC | 4 cut(s) | 2012, 2572, 2704, 2798 |
| Alw44I | GTGCAC | 1 cut(s) | 2411 |
| AlwI | GGATC | 5 cut(s) | 353, 366, 920, 1289, 2355 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3121 |
| Aor13HI | TCCGGA | 1 cut(s) | 2434 |
| AoxI | GGCC | 2 cut(s) | 2668, 2921 |
| ApaLI | GTGCAC | 1 cut(s) | 2411 |
| ApeKI | GCWGC | 9 cut(s) | 389, 392, 1826, 1916, 2251, 2309, 2720, 3097, 3121 |
| ApoI | RAATTY | 1 cut(s) | 1751 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1168, 1200 |
| AseI | ATTAAT | 4 cut(s) | 513, 981, 1320, 2445 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 470, 1755 |
| AspLEI | GCGC | 2 cut(s) | 1616, 3097 |
| AspS9I | GGNCC | 2 cut(s) | 1343, 2437 |
| AsuC2I | CCSGG | 3 cut(s) | 1142, 1538, 2999 |
| AsuHPI | GGTGA | 7 cut(s) | 541, 619, 1561, 1660, 1690, 1805, 2834 |
| AvaII | GGWCC | 2 cut(s) | 1343, 2437 |
| BaeGI | GKGCMC | 2 cut(s) | 662, 2415 |
| BamHI | GGATCC | 1 cut(s) | 358 |
| BanII | GRGCYC | 6 cut(s) | 350, 720, 1142, 1689, 1707, 2397 |
| BauI | CACGAG | 1 cut(s) | 894 |
| BbrPI | CACGTG | 1 cut(s) | 2489 |
| BbsI | GAAGAC | 3 cut(s) | 467, 1096, 2619 |
| Bbv12I | GWGCWC | 6 cut(s) | 350, 1707, 2125, 2193, 2397, 2415 |
| BbvCI | CCTCAGC | 1 cut(s) | 1977 |
| BbvI | GCAGC | 9 cut(s) | 379, 401, 1813, 1928, 2263, 2296, 2707, 3108, 3109 |
| BccI | CCATC | 7 cut(s) | 1033, 1292, 1306, 1334, 1657, 2327, 3211 |
| BceAI | ACGGC | 1 cut(s) | 939 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 556, 590, 3205, 3239 |
| BciT130I | CCWGG | 5 cut(s) | 615, 935, 1517, 2344, 3153 |
| BclI | TGATCA | 2 cut(s) | 274, 1102 |
| BcnI | CCSGG | 3 cut(s) | 1142, 1538, 2999 |
| BcoDI | GTCTC | 4 cut(s) | 2012, 2572, 2704, 2798 |
| BfaI | CTAG | 3 cut(s) | 432, 647, 2163 |
| BfmI | CTRYAG | 2 cut(s) | 939, 1347 |
| BfrI | CTTAAG | 1 cut(s) | 211 |
| BfuAI | ACCTGC | 3 cut(s) | 229, 1275, 1354 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1289 |
| BglII | AGATCT | 3 cut(s) | 193, 544, 1048 |
| BlpI | GCTNAGC | 1 cut(s) | 1530 |
| Bme1390I | CCNGG | 8 cut(s) | 615, 935, 1142, 1517, 1538, 2344, 2999, 3153 |
| Bme18I | GGWCC | 2 cut(s) | 1343, 2437 |
| BmgBI | CACGTC | 3 cut(s) | 503, 2368, 2714 |
| BmgT120I | GGNCC | 2 cut(s) | 1343, 2437 |
| BmiI | GGNNCC | 3 cut(s) | 360, 717, 1514 |
| BmrFI | CCNGG | 8 cut(s) | 615, 935, 1142, 1517, 1538, 2344, 2999, 3153 |
| BmrI | ACTGGG | 1 cut(s) | 1867 |
| BmuI | ACTGGG | 1 cut(s) | 1867 |
| BpiI | GAAGAC | 3 cut(s) | 467, 1096, 2619 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2795, 2827 |
| Bpu10I | CCTNAGC | 3 cut(s) | 246, 1977, 2226 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1530 |
| BpuEI | CTTGAG | 1 cut(s) | 334 |
| BpuMI | CCSGG | 3 cut(s) | 1142, 1538, 2999 |
| BsaAI | YACGTR | 1 cut(s) | 2489 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1047 |
| BsaI | GGTCTC | 1 cut(s) | 2012 |
| BsaJI | CCNNGG | 8 cut(s) | 613, 614, 933, 955, 1524, 1689, 2343, 2799 |
| BsaWI | WCCGGW | 1 cut(s) | 2434 |
| Bse1I | ACTGG | 6 cut(s) | 406, 710, 1862, 2838, 3013, 3030 |
| Bse3DI | GCAATG | 3 cut(s) | 701, 2760, 2928 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1047 |
| BseAI | TCCGGA | 1 cut(s) | 2434 |
| BseBI | CCWGG | 5 cut(s) | 615, 935, 1517, 2344, 3153 |
| BseDI | CCNNGG | 8 cut(s) | 613, 614, 933, 955, 1524, 1689, 2343, 2799 |
| BseGI | GGATG | 9 cut(s) | 1044, 1048, 1452, 1609, 1630, 2035, 2075, 2431, 2955 |
| BseJI | GATNNNNATC | 1 cut(s) | 1047 |
| BseMI | GCAATG | 3 cut(s) | 701, 2760, 2928 |
| BseNI | ACTGG | 6 cut(s) | 406, 710, 1862, 2838, 3013, 3030 |
| BseRI | GAGGAG | 4 cut(s) | 1994, 2621, 2855, 3189 |
| BseSI | GKGCMC | 2 cut(s) | 662, 2415 |
| BseXI | GCAGC | 9 cut(s) | 379, 401, 1813, 1928, 2263, 2296, 2707, 3108, 3109 |
| BsgI | GTGCAG | 2 cut(s) | 257, 1599 |
| Bsh1236I | CGCG | 1 cut(s) | 1614 |
| BshFI | GGCC | 2 cut(s) | 2670, 2923 |
| BsiHKAI | GWGCWC | 6 cut(s) | 350, 1707, 2125, 2193, 2397, 2415 |
| BsiSI | CCGG | 4 cut(s) | 1142, 1537, 2435, 2998 |
| BslFI | GGGAC | 1 cut(s) | 651 |
| BsmAI | GTCTC | 4 cut(s) | 2012, 2572, 2704, 2798 |
| BsmBI | CGTCTC | 1 cut(s) | 2704 |
| BsmFI | GGGAC | 1 cut(s) | 651 |
| BsmI | GAATGC | 3 cut(s) | 625, 2885, 3213 |
| BsnI | GGCC | 2 cut(s) | 2670, 2923 |
| Bso31I | GGTCTC | 1 cut(s) | 2012 |
| Bsp13I | TCCGGA | 1 cut(s) | 2434 |
| Bsp1407I | TGTACA | 2 cut(s) | 561, 805 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1530 |
| Bsp19I | CCATGG | 1 cut(s) | 2799 |
| BspACI | CCGC | 7 cut(s) | 846, 952, 1157, 1281, 2506, 3165, 3227 |
| BspANI | GGCC | 2 cut(s) | 2670, 2923 |
| BspEI | TCCGGA | 1 cut(s) | 2434 |
| BspFNI | CGCG | 1 cut(s) | 1614 |
| BspHI | TCATGA | 2 cut(s) | 1173, 2322 |
| BspLI | GGNNCC | 3 cut(s) | 360, 717, 1514 |
| BspMAI | CTGCAG | 1 cut(s) | 1351 |
| BspMI | ACCTGC | 3 cut(s) | 229, 1275, 1354 |
| BspPI | GGATC | 5 cut(s) | 353, 366, 920, 1289, 2355 |
| BspTI | CTTAAG | 1 cut(s) | 211 |
| BspTNI | GGTCTC | 1 cut(s) | 2012 |
| BsrDI | GCAATG | 3 cut(s) | 701, 2760, 2928 |
| BsrGI | TGTACA | 2 cut(s) | 561, 805 |
| BsrI | ACTGG | 6 cut(s) | 406, 710, 1862, 2838, 3013, 3030 |
| BssECI | CCNNGG | 8 cut(s) | 613, 614, 933, 955, 1524, 1689, 2343, 2799 |
| BssSI | CACGAG | 1 cut(s) | 894 |
| BssT1I | CCWWGG | 3 cut(s) | 1524, 1689, 2799 |
| Bst2BI | CACGAG | 1 cut(s) | 894 |
| Bst2UI | CCWGG | 5 cut(s) | 615, 935, 1517, 2344, 3153 |
| Bst6I | CTCTTC | 1 cut(s) | 2034 |
| BstAFI | CTTAAG | 1 cut(s) | 211 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1267, 1586 |
| BstAUI | TGTACA | 2 cut(s) | 561, 805 |
| BstBAI | YACGTR | 1 cut(s) | 2489 |
| BstC8I | GCNNGC | 7 cut(s) | 66, 1017, 1737, 2466, 3138, 3224, 3239 |
| BstDSI | CCRYGG | 2 cut(s) | 955, 2799 |
| BstEII | GGTNACC | 1 cut(s) | 2822 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 725, 3201 |
| BstF5I | GGATG | 9 cut(s) | 1044, 1048, 1452, 1609, 1630, 2035, 2075, 2431, 2955 |
| BstFNI | CGCG | 1 cut(s) | 1614 |
| BstHHI | GCGC | 2 cut(s) | 1616, 3097 |
| BstMAI | GTCTC | 4 cut(s) | 2012, 2572, 2704, 2798 |
| BstNI | CCWGG | 5 cut(s) | 615, 935, 1517, 2344, 3153 |
| BstNSI | RCATGY | 7 cut(s) | 122, 812, 2244, 2356, 3109, 3226, 3241 |
| BstPI | GGTNACC | 1 cut(s) | 2822 |
| BstSCI | CCNGG | 8 cut(s) | 613, 933, 1140, 1515, 1536, 2342, 2997, 3151 |
| BstSFI | CTRYAG | 2 cut(s) | 939, 1347 |
| BstSLI | GKGCMC | 2 cut(s) | 662, 2415 |
| BstUI | CGCG | 1 cut(s) | 1614 |
| BstV1I | GCAGC | 9 cut(s) | 379, 401, 1813, 1928, 2263, 2296, 2707, 3108, 3109 |
| BstV2I | GAAGAC | 3 cut(s) | 467, 1096, 2619 |
| BstX2I | RGATCY | 5 cut(s) | 193, 358, 544, 1048, 1294 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1790 |
| BstYI | RGATCY | 5 cut(s) | 193, 358, 544, 1048, 1294 |
| BsuRI | GGCC | 2 cut(s) | 2670, 2923 |
| BtgI | CCRYGG | 2 cut(s) | 955, 2799 |
| BtgZI | GCGATG | 1 cut(s) | 1569 |
| BtrI | CACGTC | 3 cut(s) | 503, 2368, 2714 |
| BtsCI | GGATG | 9 cut(s) | 1044, 1048, 1452, 1609, 1630, 2035, 2075, 2431, 2955 |
| BtsIMutI | CAGTG | 6 cut(s) | 284, 717, 1249, 1705, 2053, 3006 |
| BveI | ACCTGC | 3 cut(s) | 229, 1275, 1354 |
| Cac8I | GCNNGC | 7 cut(s) | 66, 1017, 1737, 2466, 3138, 3224, 3239 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3121 |
| CciI | TCATGA | 2 cut(s) | 1173, 2322 |
| CfoI | GCGC | 2 cut(s) | 1616, 3097 |
| Cfr13I | GGNCC | 2 cut(s) | 1343, 2437 |
| Csp6I | GTAC | 5 cut(s) | 379, 562, 806, 1084, 1636 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1008, 1043 |
| CviQI | GTAC | 5 cut(s) | 379, 562, 806, 1084, 1636 |
| DraIII | CACNNNGTG | 1 cut(s) | 2474 |
| Eam1104I | CTCTTC | 1 cut(s) | 2034 |
| EarI | CTCTTC | 1 cut(s) | 2034 |
| Ecl136II | GAGCTC | 3 cut(s) | 348, 1705, 2395 |
| Eco130I | CCWWGG | 3 cut(s) | 1524, 1689, 2799 |
| Eco147I | AGGCCT | 1 cut(s) | 2670 |
| Eco24I | GRGCYC | 6 cut(s) | 350, 720, 1142, 1689, 1707, 2397 |
| Eco31I | GGTCTC | 1 cut(s) | 2012 |
| Eco32I | GATATC | 2 cut(s) | 367, 2168 |
| Eco47I | GGWCC | 2 cut(s) | 1343, 2437 |
| Eco53kI | GAGCTC | 3 cut(s) | 348, 1705, 2395 |
| Eco57I | CTGAAG | 4 cut(s) | 209, 684, 1225, 2358 |
| Eco72I | CACGTG | 1 cut(s) | 2489 |
| Eco91I | GGTNACC | 1 cut(s) | 2822 |
| EcoICRI | GAGCTC | 3 cut(s) | 348, 1705, 2395 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 725, 3201 |
| EcoO65I | GGTNACC | 1 cut(s) | 2822 |
| EcoRII | CCWGG | 5 cut(s) | 613, 933, 1515, 2342, 3151 |
| EcoRV | GATATC | 2 cut(s) | 367, 2168 |
| EcoT14I | CCWWGG | 3 cut(s) | 1524, 1689, 2799 |
| EcoT22I | ATGCAT | 1 cut(s) | 1717 |
| EcoT38I | GRGCYC | 6 cut(s) | 350, 720, 1142, 1689, 1707, 2397 |
| ErhI | CCWWGG | 3 cut(s) | 1524, 1689, 2799 |
| Esp3I | CGTCTC | 1 cut(s) | 2704 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 458, 490, 986, 1018, 1400, 1432, 2769, 2801 |
| FaqI | GGGAC | 1 cut(s) | 651 |
| FauNDI | CATATG | 2 cut(s) | 310, 1717 |
| FbaI | TGATCA | 2 cut(s) | 274, 1102 |
| FokI | GGATG | 9 cut(s) | 1051, 1055, 1439, 1616, 1637, 2042, 2082, 2418, 2962 |
| FriOI | GRGCYC | 6 cut(s) | 350, 720, 1142, 1689, 1707, 2397 |
| FspBI | CTAG | 3 cut(s) | 432, 647, 2163 |
| FspI | TGCGCA | 1 cut(s) | 3096 |
| GlaI | GCGC | 2 cut(s) | 1615, 3096 |
| HaeIII | GGCC | 2 cut(s) | 2670, 2923 |
| HapII | CCGG | 4 cut(s) | 1142, 1537, 2435, 2998 |
| HhaI | GCGC | 2 cut(s) | 1616, 3097 |
| Hin6I | GCGC | 2 cut(s) | 1614, 3095 |
| HinP1I | GCGC | 2 cut(s) | 1614, 3095 |
| HincII | GTYRAC | 2 cut(s) | 208, 2497 |
| HindII | GTYRAC | 2 cut(s) | 208, 2497 |
| HindIII | AAGCTT | 1 cut(s) | 2228 |
| HinfI | GANTC | 7 cut(s) | 437, 745, 890, 1565, 2133, 2326, 2633 |
| HpaII | CCGG | 4 cut(s) | 1142, 1537, 2435, 2998 |
| HphI | GGTGA | 7 cut(s) | 541, 619, 1561, 1660, 1690, 1805, 2834 |
| Hpy188I | TCNGA | 9 cut(s) | 82, 228, 259, 603, 1457, 1621, 1662, 1998, 2556 |
| HpyCH4IV | ACGT | 9 cut(s) | 100, 502, 597, 922, 2119, 2367, 2388, 2488, 2713 |
| HpySE526I | ACGT | 9 cut(s) | 100, 502, 597, 922, 2119, 2367, 2388, 2488, 2713 |
| HspAI | GCGC | 2 cut(s) | 1614, 3095 |
| Kpn2I | TCCGGA | 1 cut(s) | 2434 |
| Ksp22I | TGATCA | 2 cut(s) | 274, 1102 |
| Lsp1109I | GCAGC | 9 cut(s) | 379, 401, 1813, 1928, 2263, 2296, 2707, 3108, 3109 |
| MaeI | CTAG | 3 cut(s) | 432, 647, 2163 |
| MaeII | ACGT | 9 cut(s) | 100, 502, 597, 922, 2119, 2367, 2388, 2488, 2713 |
| MflI | RGATCY | 5 cut(s) | 193, 358, 544, 1048, 1294 |
| MlyI | GAGTC | 1 cut(s) | 1574 |
| Mph1103I | ATGCAT | 1 cut(s) | 1717 |
| MroI | TCCGGA | 1 cut(s) | 2434 |
| MroXI | GAANNNNTTC | 2 cut(s) | 470, 1755 |
| MslI | CAYNNNNRTG | 4 cut(s) | 181, 1880, 2321, 2487 |
| MspA1I | CMGCKG | 1 cut(s) | 392 |
| MspCI | CTTAAG | 1 cut(s) | 211 |
| MspI | CCGG | 4 cut(s) | 1142, 1537, 2435, 2998 |
| MspR9I | CCNGG | 8 cut(s) | 615, 935, 1142, 1517, 1538, 2344, 2999, 3153 |
| Mva1269I | GAATGC | 3 cut(s) | 625, 2885, 3213 |
| MvaI | CCWGG | 5 cut(s) | 615, 935, 1517, 2344, 3153 |
| MvnI | CGCG | 1 cut(s) | 1614 |
| NciI | CCSGG | 3 cut(s) | 1142, 1538, 2999 |
| NcoI | CCATGG | 1 cut(s) | 2799 |
| NdeI | CATATG | 2 cut(s) | 310, 1717 |
| NlaIV | GGNNCC | 3 cut(s) | 360, 717, 1514 |
| NmuCI | GTSAC | 5 cut(s) | 135, 965, 985, 1873, 2822 |
| NsbI | TGCGCA | 1 cut(s) | 3096 |
| NsiI | ATGCAT | 1 cut(s) | 1717 |
| NspI | RCATGY | 7 cut(s) | 122, 812, 2244, 2356, 3109, 3226, 3241 |
| OliI | CACNNNNGTG | 1 cut(s) | 1880 |
| PaeI | GCATGC | 2 cut(s) | 3226, 3241 |
| PagI | TCATGA | 2 cut(s) | 1173, 2322 |
| PasI | CCCWGGG | 1 cut(s) | 614 |
| PceI | AGGCCT | 1 cut(s) | 2670 |
| PciI | ACATGT | 2 cut(s) | 808, 3105 |
| PctI | GAATGC | 3 cut(s) | 625, 2885, 3213 |
| PdmI | GAANNNNTTC | 2 cut(s) | 470, 1755 |
| PfeI | GAWTC | 6 cut(s) | 437, 745, 890, 2133, 2326, 2633 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1600, 1645, 3152 |
| PfoI | TCCNGGA | 2 cut(s) | 1536, 2997 |
| PleI | GAGTC | 1 cut(s) | 1573 |
| PmaCI | CACGTG | 1 cut(s) | 2489 |
| PmlI | CACGTG | 1 cut(s) | 2489 |
| PpsI | GAGTC | 1 cut(s) | 1573 |
| Ppu21I | YACGTR | 1 cut(s) | 2489 |
| PscI | ACATGT | 2 cut(s) | 808, 3105 |
| PshBI | ATTAAT | 4 cut(s) | 513, 981, 1320, 2445 |
| PsiI | TTATAA | 2 cut(s) | 2234, 2403 |
| Psp124BI | GAGCTC | 3 cut(s) | 350, 1707, 2397 |
| Psp6I | CCWGG | 5 cut(s) | 613, 933, 1515, 2342, 3151 |
| PspCI | CACGTG | 1 cut(s) | 2489 |
| PspEI | GGTNACC | 1 cut(s) | 2822 |
| PspGI | CCWGG | 5 cut(s) | 613, 933, 1515, 2342, 3151 |
| PspN4I | GGNNCC | 3 cut(s) | 360, 717, 1514 |
| PspPI | GGNCC | 2 cut(s) | 1343, 2437 |
| PstI | CTGCAG | 1 cut(s) | 1351 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3121 |
| PsuI | RGATCY | 5 cut(s) | 193, 358, 544, 1048, 1294 |
| PvuII | CAGCTG | 1 cut(s) | 392 |
| RsaI | GTAC | 5 cut(s) | 380, 563, 807, 1085, 1637 |
| RsaNI | GTAC | 5 cut(s) | 379, 562, 806, 1084, 1636 |
| RseI | CAYNNNNRTG | 4 cut(s) | 181, 1880, 2321, 2487 |
| SacI | GAGCTC | 3 cut(s) | 350, 1707, 2397 |
| Sau96I | GGNCC | 2 cut(s) | 1343, 2437 |
| SchI | GAGTC | 1 cut(s) | 1574 |
| ScrFI | CCNGG | 8 cut(s) | 615, 935, 1142, 1517, 1538, 2344, 2999, 3153 |
| SfcI | CTRYAG | 2 cut(s) | 939, 1347 |
| SinI | GGWCC | 2 cut(s) | 1343, 2437 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 181, 1880, 2321, 2487 |
| SmlI | CTYRAG | 2 cut(s) | 211, 349 |
| SmoI | CTYRAG | 2 cut(s) | 211, 349 |
| SphI | GCATGC | 2 cut(s) | 3226, 3241 |
| SseBI | AGGCCT | 1 cut(s) | 2670 |
| SsiI | CCGC | 7 cut(s) | 846, 952, 1157, 1281, 2506, 3165, 3227 |
| SspI | AATATT | 2 cut(s) | 911, 2221 |
| SspMI | CTAG | 3 cut(s) | 432, 647, 2163 |
| SstI | GAGCTC | 3 cut(s) | 350, 1707, 2397 |
| StuI | AGGCCT | 1 cut(s) | 2670 |
| StyD4I | CCNGG | 8 cut(s) | 613, 933, 1140, 1515, 1536, 2342, 2997, 3151 |
| StyI | CCWWGG | 3 cut(s) | 1524, 1689, 2799 |
| TaiI | ACGT | 9 cut(s) | 103, 505, 600, 925, 2122, 2370, 2391, 2491, 2716 |
| TaqI | TCGA | 2 cut(s) | 440, 2964 |
| TatI | WGTACW | 4 cut(s) | 378, 561, 805, 1083 |
| TauI | GCSGC | 3 cut(s) | 849, 1160, 3229 |
| TfiI | GAWTC | 6 cut(s) | 437, 745, 890, 2133, 2326, 2633 |
| TscAI | CASTG | 6 cut(s) | 284, 717, 1249, 1705, 2053, 3013 |
| TseFI | GTSAC | 5 cut(s) | 135, 965, 985, 1873, 2822 |
| TseI | GCWGC | 9 cut(s) | 389, 392, 1826, 1916, 2251, 2309, 2720, 3097, 3121 |
| Tsp45I | GTSAC | 5 cut(s) | 135, 965, 985, 1873, 2822 |
| TspGWI | ACGGA | 4 cut(s) | 686, 1478, 1565, 1976 |
| TspRI | CASTG | 6 cut(s) | 284, 717, 1249, 1705, 2053, 3013 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1600, 1645, 3152 |
| Vha464I | CTTAAG | 1 cut(s) | 211 |
| VneI | GTGCAC | 1 cut(s) | 2411 |
| VpaK11BI | GGWCC | 2 cut(s) | 1343, 2437 |
| VspI | ATTAAT | 4 cut(s) | 513, 981, 1320, 2445 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 725, 3201 |
| XapI | RAATTY | 1 cut(s) | 1751 |
| XceI | RCATGY | 7 cut(s) | 122, 812, 2244, 2356, 3109, 3226, 3241 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1597 |
| XmnI | GAANNNNTTC | 2 cut(s) | 470, 1755 |
| XspI | CTAG | 3 cut(s) | 432, 647, 2163 |
| Zsp2I | ATGCAT | 1 cut(s) | 1717 |