Rh1AG365800

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002740
Physical Location & Seq
Forward (+)
60123656 .. 60133316
9661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG365800.1

Sequence Viewer

Length: 4407 bp
ATGGCGGCGGCTAACGCTCCGATCACCATGAAGGAGGCCCTAACGCTTCCGAGCGTTGGGATTAATCCGCAATTCATAACGTTTACACATGTTACTATGGAGTCCGATAAGTACATATGTGTTCGGGAAACAGCGCCGCAGAATAGTATTGTGATTATTGATATGAGTATGCCGAATCAACCTTTGAGGAGGCCTATCACCGCCGACTCTGCACTTATGAATCCAAACTCCAAAATCCTTGCTTTGAAAGCTCAAGTCCAGGGAACTACTCAGGACCACCTTCAAATTTTTAACATTGAGATGAAAGCAAAACTGAAATCACACCTTATGCCTGAGCAGAGGCCGCAATTGGTTAAAGGGAACTTGCAACTCTTCTCGGTGGATCAGCAGCGCAGTCAAGCTCTTGAAGCGCATGCCGCATCCTTTGCCCAGTACAAGGTTCCAGGGAATGAGAATCCTTCCATTCTGATTTCCTTTGCCACTAAGACACTCAATGCTGGACAGATTACATCCAAGTTACATGTTATTGAGCTTGGTGCCCAGCCAGGGAAGCCATCTTTTACAAAGAAACAAGCAGATCTTTTCTTTCCTCCAGATTTTGCAGATGATTTCCCAGTTGCCATGCAGGTTGTCCAGCGTTTCCAAGAACTGTTTGCCCAAACCAAGTACAAAGAAGCTGCCGAACTGGCTGCTGAGTCCCCGCAAGGAATTCTTCGTACACCGGATACAGTTGCTAAATTTCAGACTGTGGATAATGATCTGGCTTTGAAAATATACATTAAAGCCAGAGCAACTCCAAAAGTTGTTGCAGCTTTTGCCGAGCGAAGGGAGTTTGACAAAATCCTGATCTACTCAAAGCAGGTTGGCTACACACCTGACTATCTGTTCCTTTTGCAAACAATTCTCCGAGCAGACCCGCAGGGTGCTGTTAATTTTGCATTGATGATGTCCCAAATGGAGGGTGGTTGTCCTGTTGATTACAACACCATTACAGATCTCTTTCTTCAGAGGAATCTGATTCGTGAGGCAACCGCTTTTCTACTGGATGTTTTGAAGCCAAATCTCCCTGAACATGCCTTCCTGCAGACAAAGGTCCTCGAGATTAACTTGGTTACTTTTCCAAATGTGGCTGATGCCATTTTAGCCAATGGTATGTTCAGTCATTATGATCGTCCTCGTATTGCCCAGTTATGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAACACTACTCCGAGTTGCCTGATATTAAACGTGTCATAGTGAATACACATGCAATAGAGCCGCAGTCACTAGTAGAGTTTTTTGGTACCTTGTCAAAGGAATGGGCGTTGGAGTGTATGAAGGATCTCTTGCTGGTCAATTTGAGAGGCAACCTTCAGATAATTGTGCAGGTTGCTAAGGAGTACTCTGATCAGTTGGGTACTGATCAATGCATGAAGCTATTTGAGCAGTTCAAGTCATATGAAGGATTGTACTTCTTCCTCGGATCATTTTTGAGTTCAAGTGAGGATCCTGAAATCCACTTCAAGTACATTGAGGCAGCTGCCAAAACTGGACAAATTAAAGAGGTTGAGAGAGTTACTAGAGAATCAAATTTCTATGATGCAGAGAAAACAAAGAACTTTTTAATGGAAGCTAAGCTCCCTGATGCACGACCCCTTATCAATGTTTGCGACCGTTTTGGTTTTGTTCCAGATCTCACCCACTACTTGTACACAAACAATATGCTCCGTTACATTGAGGGTTACGTTCAAAAGGTGAATCCTTCAAATGCTCCTTTAGTTGTGGGACAGTTGCTAGATGACGAGTGCCCTGAAGATTTCATCAAAGGCTTGATCCTTTCTGTACGTTCATTGCTTCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGACTTCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAGGATGTGCACGTCCACAATGCGTTGGGTAAAATCATCATTGATAGTGGAAACAATCCTGAACACTTCCTTACCACAAACCCATATTATGATTCTCGTGTTGTGGGTAAATATTGTGAGAAACGTGATCCTACTCTGGCTGTTGTTGCTTATCGACGTGGGCAATGTGATGATGAGCTTATCAATGTTACAAATAAAAATTCTTTGTTCAAATTACAAGCAAGATATGTCGTTGAGAGGATGGATGAGGATCTTTGGGCTAAAGTTCTTGACCCTGAGAATGAATTTAGAAGACAACTTATCGATCAAGTGGTTTCTACTGCCTTGCCTGAAAGCAAGAGCCCAGAACAAGTTTCTGCGGCTGTTAAGGCTTTCATGACTGCTGATTTGCCCCATGAATTAATTGAGCTTCTTGAAAAGATTGTGCTTCAAAACTCTGCCTTCAGTGGGAACTTTAATCTGCAAAATCTGCTCATTTTGACAGCCATCAAGGCAGATCCGTCCAGAGTTATGGATTATATTAATAGGCTAGACAATTTTGATGGACCTGCAGTTGGGGAAGTAGCTGTGGAAGCCCAACTGTATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTGAATGTCCAAGCTGTCAATGTCTTGCTGGATAATATCCGAAGCATTGATAGGGCTGTAGAATTTGCATTCCGTGTTGAAGAGGATGCTGTTTGGAGTCAGGTTGGAAAGGCTCAACTCCGGGAGGGACTTGTGAGTGATGCGATTGAGTCATTTATTAGGGCGGATGATGCCACACAATTCTTGGATGTTATTCGAGCTTCTGAAGATGCGGATGTTTACCATGACTTGGTGAGATACCTTCTGATGGTTAGGCAGAAGACAAAAGAGCCGAAGGTGGACAGTGAGCTCATTTATGCATATGCCAAGATTGATAGGCTGGCTGACATTGAAGAGTTCATTCTTATGCCAAATGTTGCCAATCTTCAAAATGTTGGTGATCGCCTATATGATGAGACCCTCTATGAGGCTGCAAAAATAATTTATGCTTTTATATCCAACTGGGCCAAGTTGGCTGTCACACTTGTCAAGCTCAAACAATTCCAAGGTGCTGTTGATGCAGCACGAAAAGCCAATAGTGCAAAGACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCTGAGGAGTTCCGCTTAGCTCAAATTTGTGGTCTCAACATCATTATACAGGTGGATGATTTGGAGGAGGTCAGTGAATTCTACCAGAATAGAGGGTGCTTCAATGAGCTAATATCTCTAATGGAAAGTGGTCTTGGCTTAGAACGTGCACACATGGGAATCTTTACTGAATTGGGGGTTCTGTATGCTAGATACCGTCCTGAGAAACTTATGGAGCACATCAAACTGTTCTCAACTCGTTTAAATATTCCCAAGCTCATTCGAGCTTGTGATGAGCAGCAGCATTGGAAGGAGCTAACCTATCTATATATTCAATATGATGAGTTTGATAATGCTGCAACAACCATCATGAATCATTCCCCTGAAGCCTGGGATCACATGCAGTTCAAAGATGTGGCAGTTAAAGTTGCAAATGTGGAGCTATATTATAAGGCTGTGCACTTTTACTTGCAAGAGCATCCAGATCTCATTAATGATATTCTAAATGTGCTTGCTCTCCGTGTAGATCATACACGTGTGGTGGACATTATGCGAAAGGCTGGGCACCTACTCCTTGTGAAGCCATACATGGTTGCTGTTCAGAGCAACAATGTCTCAGCTGTGAATGAGGCTTTGAATGAGATATATGTTGAAGAGGAAGACTATGAAAGATTGCGTGAATCAATTGATTTACATGACAGCTTTGATCAAATAGGTCTTGCTCAGAAGATTGAAAAACACGAGCTTCTGGAAATGAGGCGCGTTGCTGCTTATATTTACAAGAAAGCTGGAAGGTGGAAGCAGTCCATTGCATTATCAAAGAAAGACAAACTTTACAAAGATGCCATGGAGACAGCCTCACAGTCTGGTGACCGCGAACTTGCGGAGGAATTGCTTGTTTACTTCATTGAACAGGGAAAGAAAGAATGCTTTGCGTCATGCCTCTTCGTCTGTTACGATTTGATTAGGCCGGATACTGCCCTTGAACTTGCTTGGATGAACAACATGATAGACTTTGCCTTCCCATATCTGTTGCAGTTCATCCGTGAATACACCGGTAAAGTCGATGAATTGGTGAAGGACAGAATTGAAGCCCAGAATGAGGTCAAGGAGAAGGAGAAGGAAGAGAAAGAAGTTATAGCACAGCAGAACATGTATGCACAGTTGTTGCCTCTTGCTTTACCTGCTCCACCAATGCCTGGTATGGGAGGAGGGTATGGTCCTCCGCCTCCAATGGGAGGAATGGGGATGCCTCCGATGCCACCTTATGGCATGCCACCAATGGGCAGTAGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

1468

Amino Acids

166.9

Weight (kDa)

5.22

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clathrin_propel PF01394 20 - 55 2.5e-06 Clathrin propeller repeat
Clathrin_H_link PF13838 210 - 252 3.9e-13 Clathrin-H-link
Clathrin PF00637 324 - 459 6.5e-25 Region in Clathrin and VPS
Clathrin PF00637 468 - 608 6.1e-27 Region in Clathrin and VPS
Clathrin PF00637 617 - 751 1.4e-32 Region in Clathrin and VPS
Clathrin PF00637 760 - 898 3.4e-32 Region in Clathrin and VPS
Clathrin PF00637 911 - 1048 9.1e-31 Region in Clathrin and VPS
Clathrin PF00637 1057 - 1199 1.8e-27 Region in Clathrin and VPS
Clathrin PF00637 1205 - 1346 3e-32 Region in Clathrin and VPS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3558
Acc36I ACCTGC 5 cut(s) 616, 850, 1384, 2509, 4300
Acc65I GGTACC 1 cut(s) 1310
AccB1I GGYRCC 3 cut(s) 536, 1310, 3672
AccB7I CCANNNNNTGG 3 cut(s) 2800, 4307, 4376
AccII CGCG 2 cut(s) 3870, 3984
AclI AACGTT 1 cut(s) 80
AcsI RAATTY 9 cut(s) 285, 708, 737, 1597, 2152, 2237, 2633, 3153, 3206
AcuI CTGAAG 6 cut(s) 989, 1364, 1839, 2380, 2796, 3513
AcvI CACGTG 1 cut(s) 3644
AflIII ACRYGT 6 cut(s) 88, 520, 1255, 3641, 3643, 4260
AgeI ACCGGT 1 cut(s) 4163
AhlI ACTAGT 1 cut(s) 1294
AjiI CACGTC 2 cut(s) 1966, 2111
AjnI CCWGG 6 cut(s) 258, 442, 544, 1953, 3497, 4306
AjuI GAANNNNNNNTTGG 4 cut(s) 1139, 1171, 3246, 3278
AloI GAACNNNNNNTCC 2 cut(s) 1062, 1094
Alw21I GWGCWC 5 cut(s) 1965, 2862, 3280, 3348, 3570
Alw26I GTCTC 4 cut(s) 2960, 3167, 3727, 3953
Alw44I GTGCAC 3 cut(s) 1961, 3276, 3566
Ama87I CYCGRG 1 cut(s) 1097
AoxI GGCC 5 cut(s) 36, 191, 341, 3015, 4076
ApaLI GTGCAC 3 cut(s) 1961, 3276, 3566
ApoI RAATTY 9 cut(s) 285, 708, 737, 1597, 2152, 2237, 2633, 3153, 3206
ArsI GACNNNNNNTTYG 4 cut(s) 2323, 2355, 3145, 3177
AseI ATTAAT 4 cut(s) 63, 2354, 2475, 3600
AsiGI ACCGGT 1 cut(s) 4163
Asp718I GGTACC 1 cut(s) 1310
AspLEI GCGC 4 cut(s) 136, 393, 412, 3870
AspS9I GGNCC 6 cut(s) 37, 274, 1093, 2498, 3015, 4328
AsuC2I CCSGG 1 cut(s) 2693
AsuHPI GGTGA 8 cut(s) 16, 190, 1696, 1774, 2815, 2960, 3989, 4195
AvaI CYCGRG 1 cut(s) 1097
AvaII GGWCC 4 cut(s) 274, 1093, 2498, 4328
BaeGI GKGCMC 6 cut(s) 541, 1817, 1965, 3280, 3570, 3675
BamHI GGATCC 1 cut(s) 1513
BanI GGYRCC 3 cut(s) 536, 1310, 3672
BanII GRGCYC 3 cut(s) 1875, 2297, 2862
BauI CACGAG 2 cut(s) 2049, 3848
BbrPI CACGTG 1 cut(s) 3644
BbsI GAAGAC 3 cut(s) 2251, 2837, 3774
Bbv12I GWGCWC 5 cut(s) 1965, 2862, 3280, 3348, 3570
BbvCI CCTCAGC 1 cut(s) 3132
BccI CCATC 6 cut(s) 562, 2188, 2447, 2489, 2812, 3482
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 6 cut(s) 260, 444, 546, 1955, 3499, 4308
BciVI GTATCC 2 cut(s) 718, 4075
BclI TGATCA 3 cut(s) 1414, 1429, 3814
BcnI CCSGG 1 cut(s) 2693
BcoDI GTCTC 4 cut(s) 2960, 3167, 3727, 3953
BcuI ACTAGT 1 cut(s) 1294
BfaI CTAG 5 cut(s) 1295, 1587, 1802, 2483, 3318
BfmI CTRYAG 3 cut(s) 1082, 2502, 2628
BfoI RGCGCY 1 cut(s) 137
BfuAI ACCTGC 5 cut(s) 616, 850, 1384, 2509, 4300
BfuI GTATCC 2 cut(s) 718, 4075
BglI GCCNNNNNGGC 3 cut(s) 686, 2444, 3023
BglII AGATCT 4 cut(s) 577, 994, 1699, 3592
BlpI GCTNAGC 2 cut(s) 1641, 3145
BmcAI AGTACT 1 cut(s) 1409
Bme1390I CCNGG 7 cut(s) 260, 444, 546, 1955, 2693, 3499, 4308
Bme18I GGWCC 4 cut(s) 274, 1093, 2498, 4328
BmeT110I CYCGRG 1 cut(s) 1097
BmgBI CACGTC 2 cut(s) 1966, 2111
BmgT120I GGNCC 6 cut(s) 37, 274, 1093, 2498, 3015, 4328
BmiI GGNNCC 6 cut(s) 441, 538, 1312, 1515, 1872, 3674
BmrFI CCNGG 7 cut(s) 260, 444, 546, 1955, 2693, 3499, 4308
BmrI ACTGGG 4 cut(s) 424, 608, 1180, 3022
BmuI ACTGGG 4 cut(s) 424, 608, 1180, 3022
BoxI GACNNNNGTC 1 cut(s) 1091
BpiI GAAGAC 3 cut(s) 2251, 2837, 3774
BplI GAGNNNNNCTC 2 cut(s) 3950, 3982
BpmI CTGGAG 1 cut(s) 576
Bpu10I CCTNAGC 3 cut(s) 333, 1401, 3132
Bpu1102I GCTNAGC 2 cut(s) 1641, 3145
BpuEI CTTGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 2693
Bsa29I ATCGAT 1 cut(s) 2256
BsaAI YACGTR 1 cut(s) 3644
BsaBI GATNNNNATC 2 cut(s) 756, 2202
BsaI GGTCTC 2 cut(s) 2960, 3167
BsaJI CCNNGG 7 cut(s) 259, 443, 545, 1486, 3055, 3498, 3954
BsaWI WCCGGW 2 cut(s) 721, 4163
Bse118I RCCGGY 1 cut(s) 4163
Bse1I ACTGG 8 cut(s) 430, 614, 690, 1047, 1186, 1561, 1865, 3017
Bse3DI GCAATG 3 cut(s) 1856, 2123, 3915
Bse8I GATNNNNATC 2 cut(s) 756, 2202
BseBI CCWGG 6 cut(s) 260, 444, 546, 1955, 3499, 4308
BseCI ATCGAT 1 cut(s) 2256
BseDI CCNNGG 7 cut(s) 259, 443, 545, 1486, 3055, 3498, 3954
BseJI GATNNNNATC 2 cut(s) 756, 2202
BseMI GCAATG 3 cut(s) 1856, 2123, 3915
BseMII CTCAG 9 cut(s) 284, 324, 684, 1934, 2220, 3123, 3321, 3738, 3845
BseNI ACTGG 8 cut(s) 430, 614, 690, 1047, 1186, 1561, 1865, 3017
BseRI GAGGAG 4 cut(s) 202, 3149, 3209, 4332
BseSI GKGCMC 6 cut(s) 541, 1817, 1965, 3280, 3570, 3675
BseYI CCCAGC 2 cut(s) 540, 3668
BsgI GTGCAG 2 cut(s) 195, 1412
Bsh1236I CGCG 2 cut(s) 3870, 3984
Bsh1285I CGRYCG 1 cut(s) 1681
BshFI GGCC 5 cut(s) 38, 193, 343, 3017, 4078
BshNI GGYRCC 3 cut(s) 536, 1310, 3672
BshTI ACCGGT 1 cut(s) 4163
BshVI ATCGAT 1 cut(s) 2256
BsiEI CGRYCG 1 cut(s) 1681
BsiHKAI GWGCWC 5 cut(s) 1965, 2862, 3280, 3348, 3570
BsiHKCI CYCGRG 1 cut(s) 1097
BsiSI CCGG 4 cut(s) 722, 2692, 4079, 4164
BslFI GGGAC 4 cut(s) 682, 934, 1806, 2712
BsmAI GTCTC 4 cut(s) 2960, 3167, 3727, 3953
BsmFI GGGAC 4 cut(s) 682, 934, 1806, 2712
BsmI GAATGC 2 cut(s) 2639, 4040
BsnI GGCC 5 cut(s) 38, 193, 343, 3017, 4078
Bso31I GGTCTC 2 cut(s) 2960, 3167
BsoBI CYCGRG 1 cut(s) 1097
Bsp1407I TGTACA 1 cut(s) 1716
Bsp1720I GCTNAGC 2 cut(s) 1641, 3145
Bsp19I CCATGG 1 cut(s) 3954
BspANI GGCC 5 cut(s) 38, 193, 343, 3017, 4078
BspCNI CTCAG 9 cut(s) 283, 325, 685, 1933, 2221, 3124, 3322, 3737, 3844
BspDI ATCGAT 1 cut(s) 2256
BspFNI CGCG 2 cut(s) 3870, 3984
BspHI TCATGA 2 cut(s) 2328, 3477
BspLI GGNNCC 6 cut(s) 441, 538, 1312, 1515, 1872, 3674
BspMAI CTGCAG 2 cut(s) 1086, 2506
BspMI ACCTGC 5 cut(s) 616, 850, 1384, 2509, 4300
BspT107I GGYRCC 3 cut(s) 536, 1310, 3672
BspTNI GGTCTC 2 cut(s) 2960, 3167
BsrDI GCAATG 3 cut(s) 1856, 2123, 3915
BsrFI RCCGGY 1 cut(s) 4163
BsrGI TGTACA 1 cut(s) 1716
BsrI ACTGG 8 cut(s) 430, 614, 690, 1047, 1186, 1561, 1865, 3017
BssAI RCCGGY 1 cut(s) 4163
BssECI CCNNGG 7 cut(s) 259, 443, 545, 1486, 3055, 3498, 3954
BssSI CACGAG 2 cut(s) 2049, 3848
BssT1I CCWWGG 2 cut(s) 3055, 3954
Bst2BI CACGAG 2 cut(s) 2049, 3848
Bst2UI CCWGG 6 cut(s) 260, 444, 546, 1955, 3499, 4308
Bst6I CTCTTC 7 cut(s) 377, 1889, 2646, 2898, 3756, 4058, 4227
BstAPI GCANNNNNTGC 3 cut(s) 425, 815, 2422
BstAUI TGTACA 1 cut(s) 1716
BstBAI YACGTR 1 cut(s) 3644
BstC8I GCNNGC 5 cut(s) 414, 1218, 2892, 3621, 4382
BstDSI CCRYGG 1 cut(s) 3954
BstEII GGTNACC 1 cut(s) 3977
BstENI CCTNNNNNAGG 2 cut(s) 1880, 2975
BstFNI CGCG 2 cut(s) 3870, 3984
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 4 cut(s) 136, 393, 412, 3870
BstMAI GTCTC 4 cut(s) 2960, 3167, 3727, 3953
BstMCI CGRYCG 1 cut(s) 1681
BstNI CCWGG 6 cut(s) 260, 444, 546, 1955, 3499, 4308
BstNSI RCATGY 8 cut(s) 92, 416, 524, 1076, 1277, 3511, 4264, 4384
BstPAI GACNNNNGTC 1 cut(s) 1091
BstPI GGTNACC 1 cut(s) 3977
BstSCI CCNGG 7 cut(s) 258, 442, 544, 1953, 2691, 3497, 4306
BstSFI CTRYAG 3 cut(s) 1082, 2502, 2628
BstSLI GKGCMC 6 cut(s) 541, 1817, 1965, 3280, 3570, 3675
BstUI CGCG 2 cut(s) 3870, 3984
BstV2I GAAGAC 3 cut(s) 2251, 2837, 3774
BstX2I RGATCY 8 cut(s) 577, 994, 1348, 1513, 1699, 2203, 2449, 3592
BstXI CCANNNNNNTGG 1 cut(s) 2464
BstYI RGATCY 8 cut(s) 577, 994, 1348, 1513, 1699, 2203, 2449, 3592
Bsu15I ATCGAT 1 cut(s) 2256
BsuI GTATCC 2 cut(s) 718, 4075
BsuRI GGCC 5 cut(s) 38, 193, 343, 3017, 4078
BsuTUI ATCGAT 1 cut(s) 2256
BtgI CCRYGG 1 cut(s) 3954
BtrI CACGTC 2 cut(s) 1966, 2111
BtsIMutI CAGTG 4 cut(s) 1872, 2404, 2860, 3208
BveI ACCTGC 5 cut(s) 616, 850, 1384, 2509, 4300
Cac8I GCNNGC 5 cut(s) 414, 1218, 2892, 3621, 4382
CciI TCATGA 2 cut(s) 2328, 3477
CfoI GCGC 4 cut(s) 136, 393, 412, 3870
Cfr10I RCCGGY 1 cut(s) 4163
Cfr13I GGNCC 6 cut(s) 37, 274, 1093, 2498, 3015, 4328
ClaI ATCGAT 1 cut(s) 2256
CseI GACGC 1 cut(s) 4032
CspAI ACCGGT 1 cut(s) 4163
DraI TTTAAA 1 cut(s) 3372
Eam1104I CTCTTC 7 cut(s) 377, 1889, 2646, 2898, 3756, 4058, 4227
EarI CTCTTC 7 cut(s) 377, 1889, 2646, 2898, 3756, 4058, 4227
EciI GGCGGA 2 cut(s) 2750, 4323
Ecl136II GAGCTC 1 cut(s) 2860
Eco130I CCWWGG 2 cut(s) 3055, 3954
Eco147I AGGCCT 1 cut(s) 193
Eco24I GRGCYC 3 cut(s) 1875, 2297, 2862
Eco31I GGTCTC 2 cut(s) 2960, 3167
Eco47I GGWCC 4 cut(s) 274, 1093, 2498, 4328
Eco53kI GAGCTC 1 cut(s) 2860
Eco57I CTGAAG 6 cut(s) 989, 1364, 1839, 2380, 2796, 3513
Eco72I CACGTG 1 cut(s) 3644
Eco88I CYCGRG 1 cut(s) 1097
Eco91I GGTNACC 1 cut(s) 3977
EcoICRI GAGCTC 1 cut(s) 2860
EcoNI CCTNNNNNAGG 2 cut(s) 1880, 2975
EcoO109I RGGNCCY 2 cut(s) 37, 1093
EcoO65I GGTNACC 1 cut(s) 3977
EcoRI GAATTC 2 cut(s) 708, 3206
EcoRII CCWGG 6 cut(s) 258, 442, 544, 1953, 3497, 4306
EcoT14I CCWWGG 2 cut(s) 3055, 3954
EcoT22I ATGCAT 2 cut(s) 1439, 2872
EcoT38I GRGCYC 3 cut(s) 1875, 2297, 2862
ErhI CCWWGG 2 cut(s) 3055, 3954
FaqI GGGAC 4 cut(s) 682, 934, 1806, 2712
FauI CCCGC 2 cut(s) 708, 924
FauNDI CATATG 3 cut(s) 116, 1465, 2872
FbaI TGATCA 3 cut(s) 1414, 1429, 3814
FriOI GRGCYC 3 cut(s) 1875, 2297, 2862
FspBI CTAG 5 cut(s) 1295, 1587, 1802, 2483, 3318
GlaI GCGC 4 cut(s) 135, 392, 411, 3869
GsaI CCCAGC 2 cut(s) 544, 3672
GsuI CTGGAG 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 5 cut(s) 38, 193, 343, 3017, 4078
HapII CCGG 4 cut(s) 722, 2692, 4079, 4164
HgaI GACGC 1 cut(s) 4032
HhaI GCGC 4 cut(s) 136, 393, 412, 3870
Hin6I GCGC 4 cut(s) 134, 391, 410, 3868
HinP1I GCGC 4 cut(s) 134, 391, 410, 3868
HpaII CCGG 4 cut(s) 722, 2692, 4079, 4164
HphI GGTGA 8 cut(s) 16, 190, 1696, 1774, 2815, 2960, 3989, 4195
Hpy99I CGWCG 1 cut(s) 2112
HpyCH4IV ACGT 9 cut(s) 80, 1255, 1752, 1852, 1965, 2077, 2110, 3274, 3643
HpySE526I ACGT 9 cut(s) 80, 1255, 1752, 1852, 1965, 2077, 2110, 3274, 3643
HspAI GCGC 4 cut(s) 134, 391, 410, 3868
KpnI GGTACC 1 cut(s) 1314
Ksp22I TGATCA 3 cut(s) 1414, 1429, 3814
MaeI CTAG 5 cut(s) 1295, 1587, 1802, 2483, 3318
MaeII ACGT 9 cut(s) 80, 1255, 1752, 1852, 1965, 2077, 2110, 3274, 3643
MfeI CAATTG 2 cut(s) 347, 3792
MflI RGATCY 8 cut(s) 577, 994, 1348, 1513, 1699, 2203, 2449, 3592
MlyI GAGTC 5 cut(s) 110, 200, 704, 2677, 2729
MmeI TCCRAC 3 cut(s) 1314, 2656, 3033
Mph1103I ATGCAT 2 cut(s) 1439, 2872
MslI CAYNNNNRTG 3 cut(s) 299, 2915, 3642
MspA1I CMGCKG 2 cut(s) 1547, 3728
MspI CCGG 4 cut(s) 722, 2692, 4079, 4164
MspR9I CCNGG 7 cut(s) 260, 444, 546, 1955, 2693, 3499, 4308
MunI CAATTG 2 cut(s) 347, 3792
Mva1269I GAATGC 2 cut(s) 2639, 4040
MvaI CCWGG 6 cut(s) 260, 444, 546, 1955, 3499, 4308
MvnI CGCG 2 cut(s) 3870, 3984
NciI CCSGG 1 cut(s) 2693
NcoI CCATGG 1 cut(s) 3954
NdeI CATATG 3 cut(s) 116, 1465, 2872
NlaIV GGNNCC 6 cut(s) 441, 538, 1312, 1515, 1872, 3674
NmeAIII GCCGAG 1 cut(s) 844
NmuCI GTSAC 3 cut(s) 1290, 3028, 3977
NsiI ATGCAT 2 cut(s) 1439, 2872
NspI RCATGY 8 cut(s) 92, 416, 524, 1076, 1277, 3511, 4264, 4384
PaeI GCATGC 2 cut(s) 416, 4384
PaeR7I CTCGAG 1 cut(s) 1097
PagI TCATGA 2 cut(s) 2328, 3477
PceI AGGCCT 1 cut(s) 193
PciI ACATGT 3 cut(s) 88, 520, 4260
PcsI WCGNNNNNNNCGW 1 cut(s) 4062
PctI GAATGC 2 cut(s) 2639, 4040
PflMI CCANNNNNTGG 3 cut(s) 2800, 4307, 4376
PfoI TCCNGGA 1 cut(s) 2691
PinAI ACCGGT 1 cut(s) 4163
PleI GAGTC 5 cut(s) 109, 200, 703, 2676, 2728
PmaCI CACGTG 1 cut(s) 3644
PmlI CACGTG 1 cut(s) 3644
PpsI GAGTC 5 cut(s) 109, 200, 703, 2676, 2728
Ppu21I YACGTR 1 cut(s) 3644
PpuMI RGGWCCY 1 cut(s) 1093
PscI ACATGT 3 cut(s) 88, 520, 4260
PshAI GACNNNNGTC 1 cut(s) 1091
PshBI ATTAAT 4 cut(s) 63, 2354, 2475, 3600
PsiI TTATAA 1 cut(s) 3558
Psp124BI GAGCTC 1 cut(s) 2862
Psp1406I AACGTT 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 1093
Psp6I CCWGG 6 cut(s) 258, 442, 544, 1953, 3497, 4306
PspCI CACGTG 1 cut(s) 3644
PspEI GGTNACC 1 cut(s) 3977
PspFI CCCAGC 2 cut(s) 540, 3668
PspGI CCWGG 6 cut(s) 258, 442, 544, 1953, 3497, 4306
PspN4I GGNNCC 6 cut(s) 441, 538, 1312, 1515, 1872, 3674
PspPI GGNCC 6 cut(s) 37, 274, 1093, 2498, 3015, 4328
PspPPI RGGWCCY 1 cut(s) 1093
PstI CTGCAG 2 cut(s) 1086, 2506
PsuI RGATCY 8 cut(s) 577, 994, 1348, 1513, 1699, 2203, 2449, 3592
PvuII CAGCTG 2 cut(s) 1547, 3728
RseI CAYNNNNRTG 3 cut(s) 299, 2915, 3642
SacI GAGCTC 1 cut(s) 2862
Sau96I GGNCC 6 cut(s) 37, 274, 1093, 2498, 3015, 4328
ScaI AGTACT 1 cut(s) 1409
SchI GAGTC 5 cut(s) 110, 200, 704, 2677, 2729
ScrFI CCNGG 7 cut(s) 260, 444, 546, 1955, 2693, 3499, 4308
SfcI CTRYAG 3 cut(s) 1082, 2502, 2628
Sfr274I CTCGAG 1 cut(s) 1097
SinI GGWCC 4 cut(s) 274, 1093, 2498, 4328
SlaI CTCGAG 1 cut(s) 1097
SmiMI CAYNNNNRTG 3 cut(s) 299, 2915, 3642
SmlI CTYRAG 2 cut(s) 252, 1097
SmoI CTYRAG 2 cut(s) 252, 1097
SpeI ACTAGT 1 cut(s) 1294
SphI GCATGC 2 cut(s) 416, 4384
SseBI AGGCCT 1 cut(s) 193
SspI AATATT 2 cut(s) 2066, 3376
SspMI CTAG 5 cut(s) 1295, 1587, 1802, 2483, 3318
SstI GAGCTC 1 cut(s) 2862
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 7 cut(s) 258, 442, 544, 1953, 2691, 3497, 4306
StyI CCWWGG 2 cut(s) 3055, 3954
TaiI ACGT 9 cut(s) 83, 1258, 1755, 1855, 1968, 2080, 2113, 3277, 3646
TaqI TCGA 7 cut(s) 1098, 1903, 2107, 2256, 2767, 3391, 4173
TatI WGTACW 7 cut(s) 111, 432, 666, 1407, 1476, 1533, 1716
TauI GCSGC 7 cut(s) 8, 11, 139, 346, 419, 1288, 2315
TscAI CASTG 4 cut(s) 1872, 2404, 2860, 3208
TseFI GTSAC 3 cut(s) 1290, 3028, 3977
Tsp45I GTSAC 3 cut(s) 1290, 3028, 3977
TspGWI ACGGA 5 cut(s) 1724, 2442, 2633, 3617, 4142
TspRI CASTG 4 cut(s) 1872, 2404, 2860, 3208
Van91I CCANNNNNTGG 3 cut(s) 2800, 4307, 4376
VneI GTGCAC 3 cut(s) 1961, 3276, 3566
VpaK11BI GGWCC 4 cut(s) 274, 1093, 2498, 4328
VspI ATTAAT 4 cut(s) 63, 2354, 2475, 3600
XagI CCTNNNNNAGG 2 cut(s) 1880, 2975
XapI RAATTY 9 cut(s) 285, 708, 737, 1597, 2152, 2237, 2633, 3153, 3206
XceI RCATGY 8 cut(s) 92, 416, 524, 1076, 1277, 3511, 4264, 4384
XcmI CCANNNNNNNNNTGG 2 cut(s) 959, 2752
XhoI CTCGAG 1 cut(s) 1097
XspI CTAG 5 cut(s) 1295, 1587, 1802, 2483, 3318
ZrmI AGTACT 1 cut(s) 1409
Zsp2I ATGCAT 2 cut(s) 1439, 2872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.