Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G08530 AT3G11130 |
| fragaria_vesca | FvH4_3g39020 FvH4_7g24660 FvH4_7g24660 |
| malus_domestica | MD01G1154700.v1.1 MD03G1065300.v1.1 MD07G1223800.v1.1 MD11G1070100.v1.1 |
| prunus_persica | Prupe.2G252300_v2.0.a1 Prupe.6G054300_v2.0.a1 Prupe.6G054300_v2.0.a1 Prupe.6G054300_v2.0.a1 Prupe.6G054300_v2.0.a1 |
| pyrus_communis | pycom01g17210 pycom03g05230 pycom07g20230 pycom07g20240 pycom11g05860 |
| rosa_chinensis | RchiOBHm_Chr1g0370491 RchiOBHm_Chr5g0070331 |
| rosa_laevigata | RLG00000027035 RLG00000036125 |
| rosa_multiflora | Rmu_sc0002558.1_g000009 Rmu_sc0007961.1_g000022 |
| rosa_roxburghii | Rroxscaffold_1G00010850 Rroxscaffold_4G00286510 |
| rosa_rugosa | Rorug01G0357300 Rorug05G0404900 |
| rosa_samantha | Rh1AG365800 Rh1BG329500 Rh1CG341800 Rh1CG343600 Rh5AG460600 Rh5BG478900 Rh5CG503100 Rh5DG490800 |
| rosa_wichuraiana | Rw1G032230 Rw5G042930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 926 |
| AarI | CACCTGC | 1 cut(s) | 1221 |
| Acc36I | ACCTGC | 2 cut(s) | 46, 1221 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 292, 337, 1844 |
| AccBSI | CCGCTC | 1 cut(s) | 1854 |
| AccII | CGCG | 2 cut(s) | 1160, 1323 |
| AciI | CCGC | 5 cut(s) | 679, 1198, 1854, 1883, 1919 |
| AclWI | GGATC | 2 cut(s) | 1047, 1137 |
| AcoI | YGGCCR | 1 cut(s) | 1527 |
| AcsI | RAATTY | 1 cut(s) | 443 |
| AcvI | CACGTG | 1 cut(s) | 1181 |
| AfaI | GTAC | 2 cut(s) | 329, 347 |
| AflIII | ACRYGT | 3 cut(s) | 1178, 1180, 1797 |
| AjnI | CCWGG | 3 cut(s) | 207, 1034, 1843 |
| AleI | CACNNNNGTG | 2 cut(s) | 572, 1179 |
| Alw21I | GWGCWC | 6 cut(s) | 399, 817, 885, 1107, 1125, 1158 |
| Alw26I | GTCTC | 4 cut(s) | 704, 1264, 1396, 1490 |
| Alw44I | GTGCAC | 1 cut(s) | 1103 |
| AlwI | GGATC | 2 cut(s) | 1047, 1137 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1813, 1953 |
| AoxI | GGCC | 4 cut(s) | 552, 1360, 1527, 1613 |
| ApaLI | GTGCAC | 1 cut(s) | 1103 |
| ApeKI | GCWGC | 8 cut(s) | 518, 608, 943, 1001, 1412, 1813, 1944, 1947 |
| ApoI | RAATTY | 1 cut(s) | 443 |
| AseI | ATTAAT | 1 cut(s) | 12 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 447 |
| AspLEI | GCGC | 3 cut(s) | 1162, 1323, 1741 |
| AspS9I | GGNCC | 2 cut(s) | 35, 552 |
| AsuC2I | CCSGG | 1 cut(s) | 1127 |
| AsuHPI | GGTGA | 4 cut(s) | 352, 497, 1202, 1526 |
| AvaII | GGWCC | 1 cut(s) | 35 |
| BaeGI | GKGCMC | 1 cut(s) | 1107 |
| BanII | GRGCYC | 2 cut(s) | 381, 399 |
| BauI | CACGAG | 1 cut(s) | 1220 |
| BbrPI | CACGTG | 1 cut(s) | 1181 |
| BbsI | GAAGAC | 1 cut(s) | 1311 |
| Bbv12I | GWGCWC | 6 cut(s) | 399, 817, 885, 1107, 1125, 1158 |
| BbvCI | CCTCAGC | 1 cut(s) | 669 |
| BbvI | GCAGC | 6 cut(s) | 505, 620, 955, 988, 1399, 1800 |
| BccI | CCATC | 2 cut(s) | 26, 1019 |
| BciT130I | CCWGG | 3 cut(s) | 209, 1036, 1845 |
| BcnI | CCSGG | 1 cut(s) | 1127 |
| BcoDI | GTCTC | 4 cut(s) | 704, 1264, 1396, 1490 |
| BfaI | CTAG | 3 cut(s) | 20, 239, 855 |
| BfmI | CTRYAG | 1 cut(s) | 39 |
| BfuAI | ACCTGC | 2 cut(s) | 46, 1221 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 560 |
| BisI | GCNGC | 9 cut(s) | 519, 609, 944, 1002, 1413, 1814, 1919, 1945, 1948 |
| BlpI | GCTNAGC | 1 cut(s) | 682 |
| BlsI | GCNGC | 9 cut(s) | 520, 610, 945, 1003, 1414, 1815, 1920, 1946, 1949 |
| Bme1390I | CCNGG | 4 cut(s) | 209, 1036, 1127, 1845 |
| Bme18I | GGWCC | 1 cut(s) | 35 |
| BmgT120I | GGNCC | 2 cut(s) | 35, 552 |
| BmiI | GGNNCC | 1 cut(s) | 206 |
| BmrFI | CCNGG | 4 cut(s) | 209, 1036, 1127, 1845 |
| BmrI | ACTGGG | 1 cut(s) | 559 |
| BmsI | GCATC | 9 cut(s) | 184, 238, 268, 307, 595, 655, 752, 1477, 1589 |
| BmuI | ACTGGG | 1 cut(s) | 559 |
| BpiI | GAAGAC | 1 cut(s) | 1311 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1487, 1519 |
| Bpu10I | CCTNAGC | 1 cut(s) | 669 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 682 |
| BpuMI | CCSGG | 1 cut(s) | 1127 |
| BsaAI | YACGTR | 1 cut(s) | 1181 |
| BsaI | GGTCTC | 1 cut(s) | 704 |
| BsaJI | CCNNGG | 4 cut(s) | 381, 1035, 1491, 1530 |
| Bse1I | ACTGG | 4 cut(s) | 554, 1530, 1705, 1722 |
| BseBI | CCWGG | 3 cut(s) | 209, 1036, 1845 |
| BseDI | CCNNGG | 4 cut(s) | 381, 1035, 1491, 1530 |
| BseGI | GGATG | 6 cut(s) | 144, 301, 322, 727, 767, 1647 |
| BseMII | CTCAG | 5 cut(s) | 303, 660, 701, 825, 1820 |
| BseNI | ACTGG | 4 cut(s) | 554, 1530, 1705, 1722 |
| BseRI | GAGGAG | 4 cut(s) | 686, 1313, 1547, 1881 |
| BseSI | GKGCMC | 1 cut(s) | 1107 |
| BseXI | GCAGC | 6 cut(s) | 505, 620, 955, 988, 1399, 1800 |
| BsgI | GTGCAG | 1 cut(s) | 1815 |
| Bsh1236I | CGCG | 2 cut(s) | 1160, 1323 |
| BshFI | GGCC | 4 cut(s) | 554, 1362, 1529, 1615 |
| BsiHKAI | GWGCWC | 6 cut(s) | 399, 817, 885, 1107, 1125, 1158 |
| BsiSI | CCGG | 2 cut(s) | 1127, 1616 |
| BsmAI | GTCTC | 4 cut(s) | 704, 1264, 1396, 1490 |
| BsmBI | CGTCTC | 1 cut(s) | 1396 |
| BsmI | GAATGC | 2 cut(s) | 1577, 1905 |
| BsnI | GGCC | 4 cut(s) | 554, 1362, 1529, 1615 |
| Bso31I | GGTCTC | 1 cut(s) | 704 |
| Bsp1286I | GDGCHC | 7 cut(s) | 381, 399, 817, 885, 1107, 1125, 1158 |
| Bsp143I | GATC | 7 cut(s) | 487, 1039, 1129, 1141, 1171, 1653, 1749 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 682 |
| Bsp19I | CCATGG | 1 cut(s) | 1491 |
| BspACI | CCGC | 5 cut(s) | 679, 1198, 1854, 1883, 1919 |
| BspANI | GGCC | 4 cut(s) | 554, 1362, 1529, 1615 |
| BspCNI | CTCAG | 5 cut(s) | 304, 661, 700, 826, 1819 |
| BspFNI | CGCG | 2 cut(s) | 1160, 1323 |
| BspHI | TCATGA | 1 cut(s) | 1014 |
| BspLI | GGNNCC | 1 cut(s) | 206 |
| BspMAI | CTGCAG | 1 cut(s) | 43 |
| BspMI | ACCTGC | 2 cut(s) | 46, 1221 |
| BspPI | GGATC | 2 cut(s) | 1047, 1137 |
| BspTNI | GGTCTC | 1 cut(s) | 704 |
| BsrBI | CCGCTC | 1 cut(s) | 1854 |
| BsrI | ACTGG | 4 cut(s) | 554, 1530, 1705, 1722 |
| BssECI | CCNNGG | 4 cut(s) | 381, 1035, 1491, 1530 |
| BssMI | GATC | 7 cut(s) | 487, 1039, 1129, 1141, 1171, 1653, 1749 |
| BssSI | CACGAG | 1 cut(s) | 1220 |
| BssT1I | CCWWGG | 2 cut(s) | 381, 1491 |
| Bst2BI | CACGAG | 1 cut(s) | 1220 |
| Bst2UI | CCWGG | 3 cut(s) | 209, 1036, 1845 |
| Bst4CI | ACNGT | 4 cut(s) | 392, 626, 1520, 1683 |
| Bst6I | CTCTTC | 1 cut(s) | 726 |
| BstBAI | YACGTR | 1 cut(s) | 1181 |
| BstC8I | GCNNGC | 5 cut(s) | 429, 1158, 1830, 1916, 1931 |
| BstDEI | CTNAG | 6 cut(s) | 312, 669, 682, 687, 834, 1806 |
| BstDSI | CCRYGG | 1 cut(s) | 1491 |
| BstEII | GGTNACC | 2 cut(s) | 1208, 1514 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1893 |
| BstF5I | GGATG | 6 cut(s) | 144, 301, 322, 727, 767, 1647 |
| BstFNI | CGCG | 2 cut(s) | 1160, 1323 |
| BstHHI | GCGC | 3 cut(s) | 1162, 1323, 1741 |
| BstKTI | GATC | 7 cut(s) | 490, 1042, 1132, 1144, 1174, 1656, 1752 |
| BstMAI | GTCTC | 4 cut(s) | 704, 1264, 1396, 1490 |
| BstMBI | GATC | 7 cut(s) | 487, 1039, 1129, 1141, 1171, 1653, 1749 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 62, 278, 560, 605, 617, 1829 |
| BstNI | CCWGG | 3 cut(s) | 209, 1036, 1845 |
| BstNSI | RCATGY | 5 cut(s) | 936, 1048, 1801, 1918, 1933 |
| BstPI | GGTNACC | 2 cut(s) | 1208, 1514 |
| BstSCI | CCNGG | 4 cut(s) | 207, 1034, 1125, 1843 |
| BstSFI | CTRYAG | 1 cut(s) | 39 |
| BstSLI | GKGCMC | 1 cut(s) | 1107 |
| BstUI | CGCG | 2 cut(s) | 1160, 1323 |
| BstV1I | GCAGC | 6 cut(s) | 505, 620, 955, 988, 1399, 1800 |
| BstV2I | GAAGAC | 1 cut(s) | 1311 |
| BstX2I | RGATCY | 1 cut(s) | 1129 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 482 |
| BstYI | RGATCY | 1 cut(s) | 1129 |
| BsuRI | GGCC | 4 cut(s) | 554, 1362, 1529, 1615 |
| BtgI | CCRYGG | 1 cut(s) | 1491 |
| BtgZI | GCGATG | 1 cut(s) | 261 |
| BtsCI | GGATG | 6 cut(s) | 144, 301, 322, 727, 767, 1647 |
| BtsIMutI | CAGTG | 3 cut(s) | 397, 745, 1698 |
| BveI | ACCTGC | 2 cut(s) | 46, 1221 |
| Cac8I | GCNNGC | 5 cut(s) | 429, 1158, 1830, 1916, 1931 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1813, 1953 |
| CciI | TCATGA | 1 cut(s) | 1014 |
| CfoI | GCGC | 3 cut(s) | 1162, 1323, 1741 |
| Cfr13I | GGNCC | 2 cut(s) | 35, 552 |
| Csp6I | GTAC | 2 cut(s) | 328, 346 |
| CviQI | GTAC | 2 cut(s) | 328, 346 |
| DdeI | CTNAG | 6 cut(s) | 312, 669, 682, 687, 834, 1806 |
| DpnI | GATC | 7 cut(s) | 489, 1041, 1131, 1143, 1173, 1655, 1751 |
| DpnII | GATC | 7 cut(s) | 487, 1039, 1129, 1141, 1171, 1653, 1749 |
| EaeI | YGGCCR | 1 cut(s) | 1527 |
| Eam1104I | CTCTTC | 1 cut(s) | 726 |
| EarI | CTCTTC | 1 cut(s) | 726 |
| Ecl136II | GAGCTC | 1 cut(s) | 397 |
| Eco130I | CCWWGG | 2 cut(s) | 381, 1491 |
| Eco147I | AGGCCT | 1 cut(s) | 1362 |
| Eco24I | GRGCYC | 2 cut(s) | 381, 399 |
| Eco31I | GGTCTC | 1 cut(s) | 704 |
| Eco32I | GATATC | 1 cut(s) | 860 |
| Eco47I | GGWCC | 1 cut(s) | 35 |
| Eco53kI | GAGCTC | 1 cut(s) | 397 |
| Eco72I | CACGTG | 1 cut(s) | 1181 |
| Eco91I | GGTNACC | 2 cut(s) | 1208, 1514 |
| EcoICRI | GAGCTC | 1 cut(s) | 397 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1893 |
| EcoO65I | GGTNACC | 2 cut(s) | 1208, 1514 |
| EcoRII | CCWGG | 3 cut(s) | 207, 1034, 1843 |
| EcoRV | GATATC | 1 cut(s) | 860 |
| EcoT14I | CCWWGG | 2 cut(s) | 381, 1491 |
| EcoT22I | ATGCAT | 1 cut(s) | 409 |
| EcoT38I | GRGCYC | 2 cut(s) | 381, 399 |
| ErhI | CCWWGG | 2 cut(s) | 381, 1491 |
| Esp3I | CGTCTC | 1 cut(s) | 1396 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 92, 124, 1461, 1493 |
| FauI | CCCGC | 1 cut(s) | 1847 |
| FauNDI | CATATG | 1 cut(s) | 409 |
| Fnu4HI | GCNGC | 9 cut(s) | 519, 609, 944, 1002, 1413, 1814, 1919, 1945, 1948 |
| FokI | GGATG | 6 cut(s) | 131, 308, 329, 734, 774, 1654 |
| FriOI | GRGCYC | 2 cut(s) | 381, 399 |
| Fsp4HI | GCNGC | 9 cut(s) | 519, 609, 944, 1002, 1413, 1814, 1919, 1945, 1948 |
| FspBI | CTAG | 3 cut(s) | 20, 239, 855 |
| GlaI | GCGC | 3 cut(s) | 1161, 1322, 1740 |
| GluI | GCNGC | 9 cut(s) | 519, 609, 944, 1002, 1413, 1814, 1919, 1945, 1948 |
| HaeIII | GGCC | 4 cut(s) | 554, 1362, 1529, 1615 |
| HapII | CCGG | 2 cut(s) | 1127, 1616 |
| HhaI | GCGC | 3 cut(s) | 1162, 1323, 1741 |
| Hin6I | GCGC | 3 cut(s) | 1160, 1321, 1739 |
| HinP1I | GCGC | 3 cut(s) | 1160, 1321, 1739 |
| HincII | GTYRAC | 1 cut(s) | 1189 |
| HindII | GTYRAC | 1 cut(s) | 1189 |
| HindIII | AAGCTT | 1 cut(s) | 920 |
| HinfI | GANTC | 4 cut(s) | 257, 825, 1018, 1325 |
| HpaII | CCGG | 2 cut(s) | 1127, 1616 |
| HphI | GGTGA | 4 cut(s) | 352, 497, 1202, 1526 |
| Hpy166II | GTNNAC | 7 cut(s) | 328, 388, 1105, 1189, 1270, 1523, 1546 |
| Hpy188I | TCNGA | 5 cut(s) | 149, 313, 374, 690, 1248 |
| Hpy188III | TCNNGA | 6 cut(s) | 97, 230, 866, 1015, 1222, 1394 |
| Hpy8I | GTNNAC | 7 cut(s) | 328, 388, 1105, 1189, 1270, 1523, 1546 |
| HpyAV | CCTTC | 7 cut(s) | 187, 359, 547, 634, 949, 1195, 1431 |
| HpyCH4III | ACNGT | 4 cut(s) | 392, 626, 1520, 1683 |
| HpyCH4IV | ACGT | 3 cut(s) | 811, 1080, 1180 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 62, 278, 560, 605, 617, 1829 |
| HpyF3I | CTNAG | 6 cut(s) | 312, 669, 682, 687, 834, 1806 |
| HpySE526I | ACGT | 3 cut(s) | 811, 1080, 1180 |
| HspAI | GCGC | 3 cut(s) | 1160, 1321, 1739 |
| Kzo9I | GATC | 7 cut(s) | 487, 1039, 1129, 1141, 1171, 1653, 1749 |
| LmnI | GCTCC | 5 cut(s) | 204, 880, 958, 1084, 1882 |
| Lsp1109I | GCAGC | 6 cut(s) | 505, 620, 955, 988, 1399, 1800 |
| LweI | GCATC | 9 cut(s) | 184, 238, 268, 307, 595, 655, 752, 1477, 1589 |
| MaeI | CTAG | 3 cut(s) | 20, 239, 855 |
| MaeII | ACGT | 3 cut(s) | 811, 1080, 1180 |
| MaeIII | GTNAC | 5 cut(s) | 565, 1208, 1514, 1598, 1677 |
| MalI | GATC | 7 cut(s) | 489, 1041, 1131, 1143, 1173, 1655, 1751 |
| MbiI | CCGCTC | 1 cut(s) | 1854 |
| MboI | GATC | 7 cut(s) | 487, 1039, 1129, 1141, 1171, 1653, 1749 |
| MboII | GAAGA | 7 cut(s) | 85, 203, 452, 743, 1136, 1316, 1781 |
| MfeI | CAATTG | 2 cut(s) | 68, 1329 |
| MflI | RGATCY | 1 cut(s) | 1129 |
| MhlI | GDGCHC | 7 cut(s) | 381, 399, 817, 885, 1107, 1125, 1158 |
| MmeI | TCCRAC | 1 cut(s) | 117 |
| Mph1103I | ATGCAT | 1 cut(s) | 409 |
| MroXI | GAANNNNTTC | 1 cut(s) | 447 |
| MseI | TTAA | 6 cut(s) | 12, 105, 126, 1068, 1137, 1722 |
| MslI | CAYNNNNRTG | 2 cut(s) | 572, 1179 |
| MspI | CCGG | 2 cut(s) | 1127, 1616 |
| MspR9I | CCNGG | 4 cut(s) | 209, 1036, 1127, 1845 |
| MunI | CAATTG | 2 cut(s) | 68, 1329 |
| Mva1269I | GAATGC | 2 cut(s) | 1577, 1905 |
| MvaI | CCWGG | 3 cut(s) | 209, 1036, 1845 |
| MvnI | CGCG | 2 cut(s) | 1160, 1323 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 62, 278, 560, 605, 617, 1829 |
| NciI | CCSGG | 1 cut(s) | 1127 |
| NcoI | CCATGG | 1 cut(s) | 1491 |
| NdeI | CATATG | 1 cut(s) | 409 |
| NdeII | GATC | 7 cut(s) | 487, 1039, 1129, 1141, 1171, 1653, 1749 |
| NlaIV | GGNNCC | 1 cut(s) | 206 |
| NmeAIII | GCCGAG | 1 cut(s) | 1555 |
| NmuCI | GTSAC | 3 cut(s) | 565, 1208, 1514 |
| NsiI | ATGCAT | 1 cut(s) | 409 |
| NspI | RCATGY | 5 cut(s) | 936, 1048, 1801, 1918, 1933 |
| OliI | CACNNNNGTG | 2 cut(s) | 572, 1179 |
| PaeI | GCATGC | 2 cut(s) | 1918, 1933 |
| PagI | TCATGA | 1 cut(s) | 1014 |
| PaqCI | CACCTGC | 1 cut(s) | 1221 |
| PceI | AGGCCT | 1 cut(s) | 1362 |
| PciI | ACATGT | 1 cut(s) | 1797 |
| PctI | GAATGC | 2 cut(s) | 1577, 1905 |
| PdmI | GAANNNNTTC | 1 cut(s) | 447 |
| PfeI | GAWTC | 4 cut(s) | 257, 825, 1018, 1325 |
| PflFI | GACNNNGTC | 1 cut(s) | 1622 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 292, 337, 1844 |
| PkrI | GCNGC | 9 cut(s) | 520, 610, 945, 1003, 1414, 1815, 1920, 1946, 1949 |
| PmaCI | CACGTG | 1 cut(s) | 1181 |
| PmlI | CACGTG | 1 cut(s) | 1181 |
| Ppu21I | YACGTR | 1 cut(s) | 1181 |
| PscI | ACATGT | 1 cut(s) | 1797 |
| PshBI | ATTAAT | 1 cut(s) | 12 |
| PsiI | TTATAA | 1 cut(s) | 926 |
| Psp124BI | GAGCTC | 1 cut(s) | 399 |
| Psp6I | CCWGG | 3 cut(s) | 207, 1034, 1843 |
| PspCI | CACGTG | 1 cut(s) | 1181 |
| PspEI | GGTNACC | 2 cut(s) | 1208, 1514 |
| PspGI | CCWGG | 3 cut(s) | 207, 1034, 1843 |
| PspN4I | GGNNCC | 1 cut(s) | 206 |
| PspPI | GGNCC | 2 cut(s) | 35, 552 |
| PstI | CTGCAG | 1 cut(s) | 43 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1813, 1953 |
| PsuI | RGATCY | 1 cut(s) | 1129 |
| PsyI | GACNNNGTC | 1 cut(s) | 1622 |
| RsaI | GTAC | 2 cut(s) | 329, 347 |
| RsaNI | GTAC | 2 cut(s) | 328, 346 |
| RseI | CAYNNNNRTG | 2 cut(s) | 572, 1179 |
| SacI | GAGCTC | 1 cut(s) | 399 |
| SaqAI | TTAA | 6 cut(s) | 12, 105, 126, 1068, 1137, 1722 |
| SatI | GCNGC | 9 cut(s) | 519, 609, 944, 1002, 1413, 1814, 1919, 1945, 1948 |
| Sau3AI | GATC | 7 cut(s) | 487, 1039, 1129, 1141, 1171, 1653, 1749 |
| Sau96I | GGNCC | 2 cut(s) | 35, 552 |
| ScrFI | CCNGG | 4 cut(s) | 209, 1036, 1127, 1845 |
| SduI | GDGCHC | 7 cut(s) | 381, 399, 817, 885, 1107, 1125, 1158 |
| SfaNI | GCATC | 9 cut(s) | 184, 238, 268, 307, 595, 655, 752, 1477, 1589 |
| SfcI | CTRYAG | 1 cut(s) | 39 |
| SinI | GGWCC | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 572, 1179 |
| SphI | GCATGC | 2 cut(s) | 1918, 1933 |
| SseBI | AGGCCT | 1 cut(s) | 1362 |
| SsiI | CCGC | 5 cut(s) | 679, 1198, 1854, 1883, 1919 |
| SspMI | CTAG | 3 cut(s) | 20, 239, 855 |
| SstI | GAGCTC | 1 cut(s) | 399 |
| StuI | AGGCCT | 1 cut(s) | 1362 |
| StyD4I | CCNGG | 4 cut(s) | 207, 1034, 1125, 1843 |
| StyI | CCWWGG | 2 cut(s) | 381, 1491 |
| TaaI | ACNGT | 4 cut(s) | 392, 626, 1520, 1683 |
| TaiI | ACGT | 3 cut(s) | 814, 1083, 1183 |
| TaqI | TCGA | 2 cut(s) | 438, 1656 |
| TauI | GCSGC | 1 cut(s) | 1921 |
| TfiI | GAWTC | 4 cut(s) | 257, 825, 1018, 1325 |
| Tru1I | TTAA | 6 cut(s) | 12, 105, 126, 1068, 1137, 1722 |
| Tru9I | TTAA | 6 cut(s) | 12, 105, 126, 1068, 1137, 1722 |
| TscAI | CASTG | 3 cut(s) | 397, 745, 1705 |
| TseFI | GTSAC | 3 cut(s) | 565, 1208, 1514 |
| TseI | GCWGC | 8 cut(s) | 518, 608, 943, 1001, 1412, 1813, 1944, 1947 |
| Tsp45I | GTSAC | 3 cut(s) | 565, 1208, 1514 |
| TspDTI | ATGAA | 7 cut(s) | 528, 529, 1031, 1326, 1540, 1658, 1728 |
| TspGWI | ACGGA | 3 cut(s) | 170, 257, 1679 |
| TspRI | CASTG | 3 cut(s) | 397, 745, 1705 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1622 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 292, 337, 1844 |
| VneI | GTGCAC | 1 cut(s) | 1103 |
| VpaK11BI | GGWCC | 1 cut(s) | 35 |
| VspI | ATTAAT | 1 cut(s) | 12 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1893 |
| XapI | RAATTY | 1 cut(s) | 443 |
| XceI | RCATGY | 5 cut(s) | 936, 1048, 1801, 1918, 1933 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 289 |
| XmnI | GAANNNNTTC | 1 cut(s) | 447 |
| XspI | CTAG | 3 cut(s) | 20, 239, 855 |
| Zsp2I | ATGCAT | 1 cut(s) | 409 |