Rh1CG343600

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002740
Physical Location & Seq
Forward (+)
61920696 .. 62118977
198282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG343600.1

Sequence Viewer

Length: 4020 bp
ATGTGCTTAGGTACTTTGTTTGGATTTCATTTTCAGTTAAACAATTTGGAGCTTGCCGTCAATCTGGCAAAAAGAGGAAATCTTCCTGGTGCTGAGAATCTGGTTGTCCAGCGTTTCCAAGAACTGTTTGCCCAAACCAAGTACAAAGAAGCTGCCGAACTGGCTGCTGAGTCCCCGCAAGGAATTCTTCGTACGCCGGATACAGTTGCTAAATTTCAGAGTGTTCCTGTCCAAGCTGGGCAAACACCCCCTTTGTTGCAATACTTCGGGACACTCTTAACGAGAGGGAAGCTCAATGCCTTTGAGTCATTGGAATTGTCACGTCTTGTTGTGAACCAGAACAAGAAGAATCTTTTGGAAAACTGGTTGGCAGAGGACAAACTGGAATGCAGTGAGGAACTAGGAGATCTTGTGAAGACTGTGGATAATGATCTGGCTTTGAAAATATACATTAAAGCCAGAGCAACTCCAAAAGTTGGCTACACACCTGACTATCTGTTCCTTTTGCAAACAATTCTCCGAGCAGACCCGCAGGGTGCTGTTAATTTTGCATTGATGATGTCCCAAATGGAGGGTGGTTGTCCTGTTGATTACAACACCATTACAGATCTCTTTCTTCAGAGGAATCTGATTCGTGAGGCAACCGCTTTTCTACTGGATGTTTTGAAGCCAAATCTCCCTGAACATGCCTTCCTGCAGACAAAGGTCCTCGAGATTAACTTGGTTACTTTTCCAAATGTGGCTGATGCCATTTTAGCCAATGGTATGTTCAGTCATTATGATCGTCCTCGAATTGCCCAGTTATGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAACACTACTCCGAGTTGCCTGATATTAAACGTGTCATAGTGAATACACATGCAATAGAGCCGCAGTCACTAGTAGAGTTTTTTGGTACCTTGTCAAAGGAATGGGCATTGGAGTGTATGAAGGATCTCTTGCTGGTCAATTTGAGAGGCAACCTTCAGATAATTGTGCAGGTTGCTAAGGAGTACTCTGATCAGTTGGGTACTGATCAATGCATGAAGCTATTTGAGCAGTTCAAGTCATATGAAGGATTGTACTTCTTCCTCGGATCATTTTTGAGTTCAAGTGAGGATCCTGAAATCCACTTCAAGTACATTGAGGCAGCTGCCAAAACTGGACAAATTAAAGAGGTCGAGAGAGTTACTAGAGAATCAAATTTCTATGATGCAGAGAAAACAAAGAACTTTTTAATGGAAGCTAAGCTCCCTGATGCACGACCCCTTATCAATGTTTGCGACCGTTTTGGTTTTGTTCCAGATCTCACCCACTACTTGTACACAAACAATATGCTCCGTTACATTGAGGGTTACGTTCAAAAGGTGAATCCTTCAAATGCTCCTTTAGTTGTGGGACAGTTGCTAGATGACGAGTGCCCTGAAGATTTTATCAAAGGCTTGATCCTTTCTGTACGTTCATTGCTTCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGACTTCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAGGATGTGCACGTCCACAATGCGTTGGGTAAAATCATCATTGATAGTGGAAACAATTCTGAACACTTCCTTACCACAAACCCATATTATGATTCTCGTGTTGTGGGTAAATATTGTGAAAAACGTGATCCTACTCTGGCTGTTGTTGCTTATCAACGTGGACAATGTGATGATAAGCTTATCAATCTTACAAATAAAAACTCGTTGTTCAAATTACAAGCAAGATATGTGGTTGAGAGGATGGATGAGGATCTTTGGGCTAACGTTCTTGACCCTGAGAATGAATTTAGAAGACAACTTATTGATCAAGTGGTTTCTACTGCCTTGCCTGAAAGCAAGAGCCCAGAACAAGTTTCTGCGGCTGTTAAGGCTTTCATGACTGCTGATTTGCCGCATGAATTAATTGAGCTCCTTGAAAAGATTGTGCTTCAAAACTCTGCCTTCAGTGGGAACTTTAATCTGCAGAATCTGCTCATTTTGACAGCCATCAAGGCAGATCCGTCTAGAGTTATGGATTATATTAATAGGCTAGACAATTTCGATGGACCTGCAGTTGGGGAAGTAGCTGTGGAAGCCCAACTGTATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTGAATGTCCAAGCTGTCAATGTCTTGTTGGATGATATCCGAAGCATTGATAGGGCTGTAGAATTTGCATTCCGTGTTGAAGAGGATGCTGTTTGGAGTCAGGTTGGTAAGGCTCAACTCCGGGAGGGACTTGTGAGTGATGCGATCGAGTCATTTATTCGGGCGGATGATGCCACACAATTCTTGGATGTTATTCGAGCTTCTCAAGATGCAGATGTTTACCATGACTTGGTGAGATACCTTCTGATGGTTAGGCAGAAGACGAAAGAGCCGAAGGTGGACAGTGAGCTCGTTTATGCATATGCCAAGATTGATAGGCTGGCTGACATTGAAGAGTTCATTCTTATGCCAAATGTTGCCAATCTTCAAAGTGTTGGTGATCGCCTATATGATGAGACCCTCTATGAGGCTGCAAAAATAATTTATGCTTTTATATCCAACTGGGCCAAGTTGGCTGTCACACTTGTCAAGCTCAAACAATTCCAAGGTGCTGTTGATGCAGCACGAAAAGCCAATAGTGCAAAGACATGGAAGGAAGTTTGCTTTGCTTGTGTTGCTGCTGAGGAGTTCCACTTAGCTCAAATTTGTGGTCTCAACATCATTATACAGGTGGATGATTTGGAGGAGGTCAGTGAATTCTACCAGAATAGAGGATGCTTCAATGAGCTAATATCTCTTATGGAAAGTGGTCTTGTCTTAGAACGTGCACACATGGGAATCTTTACTGAATTGGGGGTTCTGTATGCTAGATACCGTCCTGAGAAACTTATGGAGCACATCAAACTGTTCTCAACTCGTTTAAATATTCCCAAGCTCATTCGAGCTTGTGATGAGCAGCAGCATTGGAAGGAGCTAACCTATTTATATATTCAATATGATGAGTTTGATAATGCTGCAACGACCATCATGAATCATTCCCCTGAAGCCTGGGATCACATGCAGTTCAAAGATGTGGCAGTTAAAGTTGCAAATGTGGAGCTATATTATAAGGCTGTGCACTTTTACTTGCAAGAGCATCCAGATCTCATTAATGATATTCTAAATGTGCTTGCTCTCCGTGTAGATCATACACGTGTGGTGGACATTATGCGAAAGGCTGGGCACCTACTCCTTGTGAAGCCATACATGGTTGCTGTTCAGAGCAACAATGTCTCAGCTGTGAATGAGGCTTTGAATGAGATATATGTTGAAGAGGAAGACTATGAAAGATTGCGTGAATCAATTGATTTACATGACAGCTTTGATCAAATAGGTCTTGCTCAGAAGATTGAAAAACACAAGCTTCTGGAAATGAGGCGCGTTGCTGCTTATATTTACAAGAAAGCTGGAAGCTGGAAGCAGTCCATTGCATTATCAAAGAAAGACAAACTTTACAAAGATGCCATGGAGACAGCCTCACAGTCTGGTGACCGCGAACTTGCAGAGGAATTGCTTGTTTACTTCATTGAACAGGGAAAGAAAGAATGCTTTGCGTCATGCCTCTTCGTCTGTTACGATTTGATTAGGCCAGATACTGCCCTTGAACTTGCTTGGATGAACAACATGATAGACTTTGCCTTCCCATATTTGTTACAGTTTATCCGTGAATACACCGGTAAAGTCGATGAATTGGTGAAGGACAGAATTGAAGCCCAGAATGAGGTCAAGGTGAAGGAAAAGGAAGAGAAAGAAGTTATAGCACAGCAGAACATGTATGCACAGTTGTTGCCTCTTGCTTTGCCTGCTCCACCAATGCCTGGTATGGGAGGAGGGTATGGTCCTCCACCTCCAATGGGAGGAATGGGGATGCCCCCGATGCCACCTTATGGCATGCCACCAATGGGCAGTAGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

1339

Amino Acids

152.42

Weight (kDa)

5.1

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clathrin_H_link PF13838 27 - 92 3e-28 Clathrin-H-link
Clathrin PF00637 195 - 330 6.1e-25 Region in Clathrin and VPS
Clathrin PF00637 339 - 479 5.4e-27 Region in Clathrin and VPS
Clathrin PF00637 488 - 622 3.5e-31 Region in Clathrin and VPS
Clathrin PF00637 631 - 769 4.9e-32 Region in Clathrin and VPS
Clathrin PF00637 782 - 918 4.6e-29 Region in Clathrin and VPS
Clathrin PF00637 928 - 1070 7.8e-27 Region in Clathrin and VPS
Clathrin PF00637 1076 - 1217 4.6e-32 Region in Clathrin and VPS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3171
Acc36I ACCTGC 2 cut(s) 997, 2122
Acc65I GGTACC 1 cut(s) 923
AccB1I GGYRCC 2 cut(s) 923, 3285
AccB7I CCANNNNNTGG 4 cut(s) 476, 2413, 3920, 3989
AccII CGCG 2 cut(s) 3483, 3597
AciI CCGC 8 cut(s) 176, 530, 645, 899, 1925, 1958, 2348, 3595
AclI AACGTT 1 cut(s) 1830
AclWI GGATC 9 cut(s) 969, 1111, 1121, 1134, 1447, 1688, 1824, 2057, 3123
AcsI RAATTY 7 cut(s) 183, 212, 1210, 1850, 2246, 2766, 2819
AcuI CTGAAG 5 cut(s) 602, 977, 1452, 1993, 3126
AcvI CACGTG 1 cut(s) 3257
AflIII ACRYGT 4 cut(s) 868, 3254, 3256, 3873
AgeI ACCGGT 1 cut(s) 3776
AhlI ACTAGT 1 cut(s) 907
AjiI CACGTC 2 cut(s) 323, 1579
AjnI CCWGG 4 cut(s) 85, 1566, 3110, 3919
AjuI GAANNNNNNNTTGG 4 cut(s) 338, 370, 752, 784
AloI GAACNNNNNNTCC 2 cut(s) 675, 707
Alw21I GWGCWC 6 cut(s) 1578, 1977, 2475, 2893, 2961, 3183
Alw26I GTCTC 4 cut(s) 2573, 2780, 3340, 3566
Alw44I GTGCAC 3 cut(s) 1574, 2889, 3179
AlwI GGATC 9 cut(s) 969, 1111, 1121, 1134, 1447, 1688, 1824, 2057, 3123
AlwNI CAGNNNCTG 2 cut(s) 2035, 3698
Ama87I CYCGRG 1 cut(s) 710
AoxI GGCC 2 cut(s) 2628, 3689
ApaLI GTGCAC 3 cut(s) 1574, 2889, 3179
ApoI RAATTY 7 cut(s) 183, 212, 1210, 1850, 2246, 2766, 2819
ArsI GACNNNNNNTTYG 4 cut(s) 1936, 1968, 2758, 2790
AseI ATTAAT 3 cut(s) 1967, 2088, 3213
AsiGI ACCGGT 1 cut(s) 3776
Asp700I GAANNNNTTC 1 cut(s) 1621
Asp718I GGTACC 1 cut(s) 923
AspLEI GCGC 1 cut(s) 3483
AspS9I GGNCC 4 cut(s) 706, 2111, 2628, 3941
AsuC2I CCSGG 1 cut(s) 2306
AsuHPI GGTGA 7 cut(s) 1309, 1387, 2428, 2573, 3602, 3808, 3844
AvaI CYCGRG 1 cut(s) 710
AvaII GGWCC 3 cut(s) 706, 2111, 3941
BaeGI GKGCMC 5 cut(s) 1430, 1578, 2893, 3183, 3288
BamHI GGATCC 1 cut(s) 1126
BanI GGYRCC 2 cut(s) 923, 3285
BanII GRGCYC 4 cut(s) 1488, 1910, 1977, 2475
BauI CACGAG 1 cut(s) 1662
BbrPI CACGTG 1 cut(s) 3257
BbsI GAAGAC 4 cut(s) 422, 1864, 2450, 3387
Bbv12I GWGCWC 6 cut(s) 1578, 1977, 2475, 2893, 2961, 3183
BbvCI CCTCAGC 1 cut(s) 2745
BccI CCATC 5 cut(s) 1801, 2060, 2102, 2425, 3095
BceAI ACGGC 1 cut(s) 41
BcgI CGANNNNNNTGC 4 cut(s) 146, 180, 2096, 2130
BciT130I CCWGG 4 cut(s) 87, 1568, 3112, 3921
BciVI GTATCC 1 cut(s) 193
BclI TGATCA 4 cut(s) 1027, 1042, 1870, 3427
BcnI CCSGG 1 cut(s) 2306
BcoDI GTCTC 4 cut(s) 2573, 2780, 3340, 3566
BcuI ACTAGT 1 cut(s) 907
BfaI CTAG 7 cut(s) 401, 908, 1200, 1415, 2070, 2096, 2931
BfmI CTRYAG 4 cut(s) 695, 2027, 2115, 2241
BfuAI ACCTGC 2 cut(s) 997, 2122
BfuI GTATCC 1 cut(s) 193
BglI GCCNNNNNGGC 3 cut(s) 161, 2057, 2636
BglII AGATCT 4 cut(s) 406, 607, 1312, 3205
BlpI GCTNAGC 1 cut(s) 1254
BmcAI AGTACT 1 cut(s) 1022
Bme1390I CCNGG 5 cut(s) 87, 1568, 2306, 3112, 3921
Bme18I GGWCC 3 cut(s) 706, 2111, 3941
BmeT110I CYCGRG 1 cut(s) 710
BmgBI CACGTC 2 cut(s) 323, 1579
BmgT120I GGNCC 4 cut(s) 706, 2111, 2628, 3941
BmiI GGNNCC 4 cut(s) 925, 1128, 1485, 3287
BmrFI CCNGG 5 cut(s) 87, 1568, 2306, 3112, 3921
BmrI ACTGGG 2 cut(s) 793, 2635
BmuI ACTGGG 2 cut(s) 793, 2635
BoxI GACNNNNGTC 1 cut(s) 704
BpiI GAAGAC 4 cut(s) 422, 1864, 2450, 3387
BplI GAGNNNNNCTC 4 cut(s) 276, 308, 3563, 3595
Bpu10I CCTNAGC 3 cut(s) 7, 1014, 2745
Bpu1102I GCTNAGC 1 cut(s) 1254
BpuEI CTTGAG 1 cut(s) 2373
BpuMI CCSGG 1 cut(s) 2306
BsaAI YACGTR 1 cut(s) 3257
BsaBI GATNNNNATC 2 cut(s) 429, 1815
BsaI GGTCTC 2 cut(s) 2573, 2780
BsaJI CCNNGG 4 cut(s) 1099, 2668, 3111, 3567
BsaWI WCCGGW 1 cut(s) 3776
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bse118I RCCGGY 1 cut(s) 3776
Bse1I ACTGG 8 cut(s) 165, 368, 387, 660, 799, 1174, 1478, 2630
Bse3DI GCAATG 2 cut(s) 1469, 3528
Bse8I GATNNNNATC 2 cut(s) 429, 1815
BseBI CCWGG 4 cut(s) 87, 1568, 3112, 3921
BseDI CCNNGG 4 cut(s) 1099, 2668, 3111, 3567
BseJI GATNNNNATC 2 cut(s) 429, 1815
BseMI GCAATG 2 cut(s) 1469, 3528
BseMII CTCAG 8 cut(s) 84, 159, 1547, 1833, 2736, 2934, 3351, 3458
BseNI ACTGG 8 cut(s) 165, 368, 387, 660, 799, 1174, 1478, 2630
BseRI GAGGAG 3 cut(s) 2762, 2822, 3945
BseSI GKGCMC 5 cut(s) 1430, 1578, 2893, 3183, 3288
BseYI CCCAGC 2 cut(s) 236, 3281
BsgI GTGCAG 1 cut(s) 1025
Bsh1236I CGCG 2 cut(s) 3483, 3597
Bsh1285I CGRYCG 2 cut(s) 1294, 2331
BshFI GGCC 2 cut(s) 2630, 3691
BshNI GGYRCC 2 cut(s) 923, 3285
BshTI ACCGGT 1 cut(s) 3776
BsiEI CGRYCG 2 cut(s) 1294, 2331
BsiHKAI GWGCWC 6 cut(s) 1578, 1977, 2475, 2893, 2961, 3183
BsiHKCI CYCGRG 1 cut(s) 710
BsiSI CCGG 3 cut(s) 197, 2305, 3777
BsiWI CGTACG 1 cut(s) 191
BslFI GGGAC 5 cut(s) 157, 283, 547, 1419, 2325
BsmAI GTCTC 4 cut(s) 2573, 2780, 3340, 3566
BsmFI GGGAC 5 cut(s) 157, 283, 547, 1419, 2325
BsmI GAATGC 3 cut(s) 392, 2252, 3653
BsnI GGCC 2 cut(s) 2630, 3691
Bso31I GGTCTC 2 cut(s) 2573, 2780
BsoBI CYCGRG 1 cut(s) 710
Bsp1407I TGTACA 1 cut(s) 1329
Bsp1720I GCTNAGC 1 cut(s) 1254
Bsp19I CCATGG 1 cut(s) 3567
BspACI CCGC 8 cut(s) 176, 530, 645, 899, 1925, 1958, 2348, 3595
BspANI GGCC 2 cut(s) 2630, 3691
BspCNI CTCAG 8 cut(s) 85, 160, 1546, 1834, 2737, 2935, 3350, 3457
BspFNI CGCG 2 cut(s) 3483, 3597
BspHI TCATGA 2 cut(s) 1941, 3090
BspLI GGNNCC 4 cut(s) 925, 1128, 1485, 3287
BspMAI CTGCAG 3 cut(s) 699, 2031, 2119
BspMI ACCTGC 2 cut(s) 997, 2122
BspPI GGATC 9 cut(s) 969, 1111, 1121, 1134, 1447, 1688, 1824, 2057, 3123
BspT107I GGYRCC 2 cut(s) 923, 3285
BspTNI GGTCTC 2 cut(s) 2573, 2780
BsrDI GCAATG 2 cut(s) 1469, 3528
BsrFI RCCGGY 1 cut(s) 3776
BsrGI TGTACA 1 cut(s) 1329
BsrI ACTGG 8 cut(s) 165, 368, 387, 660, 799, 1174, 1478, 2630
BssAI RCCGGY 1 cut(s) 3776
BssECI CCNNGG 4 cut(s) 1099, 2668, 3111, 3567
BssSI CACGAG 1 cut(s) 1662
BssT1I CCWWGG 2 cut(s) 2668, 3567
Bst2BI CACGAG 1 cut(s) 1662
Bst2UI CCWGG 4 cut(s) 87, 1568, 3112, 3921
Bst6I CTCTTC 6 cut(s) 1502, 2259, 2511, 3369, 3671, 3840
BstAPI GCANNNNNTGC 1 cut(s) 2035
BstAUI TGTACA 1 cut(s) 1329
BstBAI YACGTR 1 cut(s) 3257
BstC8I GCNNGC 6 cut(s) 54, 831, 2505, 3234, 3906, 3995
BstDSI CCRYGG 1 cut(s) 3567
BstEII GGTNACC 1 cut(s) 3590
BstENI CCTNNNNNAGG 2 cut(s) 1493, 2588
BstFNI CGCG 2 cut(s) 3483, 3597
BstHHI GCGC 1 cut(s) 3483
BstMAI GTCTC 4 cut(s) 2573, 2780, 3340, 3566
BstMCI CGRYCG 2 cut(s) 1294, 2331
BstNI CCWGG 4 cut(s) 87, 1568, 3112, 3921
BstNSI RCATGY 5 cut(s) 689, 890, 3124, 3877, 3997
BstPAI GACNNNNGTC 1 cut(s) 704
BstPI GGTNACC 1 cut(s) 3590
BstSCI CCNGG 5 cut(s) 85, 1566, 2304, 3110, 3919
BstSFI CTRYAG 4 cut(s) 695, 2027, 2115, 2241
BstSLI GKGCMC 5 cut(s) 1430, 1578, 2893, 3183, 3288
BstUI CGCG 2 cut(s) 3483, 3597
BstV2I GAAGAC 4 cut(s) 422, 1864, 2450, 3387
BstX2I RGATCY 8 cut(s) 406, 607, 961, 1126, 1312, 1816, 2062, 3205
BstYI RGATCY 8 cut(s) 406, 607, 961, 1126, 1312, 1816, 2062, 3205
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 2 cut(s) 2630, 3691
BtgI CCRYGG 1 cut(s) 3567
BtrI CACGTC 2 cut(s) 323, 1579
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 5 cut(s) 397, 1485, 2017, 2473, 2821
BveI ACCTGC 2 cut(s) 997, 2122
Cac8I GCNNGC 6 cut(s) 54, 831, 2505, 3234, 3906, 3995
CaiI CAGNNNCTG 2 cut(s) 2035, 3698
CciI TCATGA 2 cut(s) 1941, 3090
CfoI GCGC 1 cut(s) 3483
Cfr10I RCCGGY 1 cut(s) 3776
Cfr13I GGNCC 4 cut(s) 706, 2111, 2628, 3941
CseI GACGC 1 cut(s) 3645
CspAI ACCGGT 1 cut(s) 3776
CspCI CAANNNNNGTGG 2 cut(s) 1776, 1811
DraI TTTAAA 1 cut(s) 2985
Eam1104I CTCTTC 6 cut(s) 1502, 2259, 2511, 3369, 3671, 3840
EarI CTCTTC 6 cut(s) 1502, 2259, 2511, 3369, 3671, 3840
EciI GGCGGA 1 cut(s) 2363
Ecl136II GAGCTC 2 cut(s) 1975, 2473
Eco130I CCWWGG 2 cut(s) 2668, 3567
Eco24I GRGCYC 4 cut(s) 1488, 1910, 1977, 2475
Eco31I GGTCTC 2 cut(s) 2573, 2780
Eco32I GATATC 1 cut(s) 2221
Eco47I GGWCC 3 cut(s) 706, 2111, 3941
Eco53kI GAGCTC 2 cut(s) 1975, 2473
Eco57I CTGAAG 5 cut(s) 602, 977, 1452, 1993, 3126
Eco72I CACGTG 1 cut(s) 3257
Eco88I CYCGRG 1 cut(s) 710
Eco91I GGTNACC 1 cut(s) 3590
EcoICRI GAGCTC 2 cut(s) 1975, 2473
EcoNI CCTNNNNNAGG 2 cut(s) 1493, 2588
EcoO109I RGGNCCY 1 cut(s) 706
EcoO65I GGTNACC 1 cut(s) 3590
EcoRI GAATTC 2 cut(s) 183, 2819
EcoRII CCWGG 4 cut(s) 85, 1566, 3110, 3919
EcoRV GATATC 1 cut(s) 2221
EcoT14I CCWWGG 2 cut(s) 2668, 3567
EcoT22I ATGCAT 2 cut(s) 1052, 2485
EcoT38I GRGCYC 4 cut(s) 1488, 1910, 1977, 2475
ErhI CCWWGG 2 cut(s) 2668, 3567
FaqI GGGAC 5 cut(s) 157, 283, 547, 1419, 2325
FauI CCCGC 2 cut(s) 183, 537
FauNDI CATATG 2 cut(s) 1078, 2485
FbaI TGATCA 4 cut(s) 1027, 1042, 1870, 3427
FriOI GRGCYC 4 cut(s) 1488, 1910, 1977, 2475
FspBI CTAG 7 cut(s) 401, 908, 1200, 1415, 2070, 2096, 2931
GlaI GCGC 1 cut(s) 3482
GsaI CCCAGC 2 cut(s) 240, 3285
HaeIII GGCC 2 cut(s) 2630, 3691
HapII CCGG 3 cut(s) 197, 2305, 3777
HgaI GACGC 1 cut(s) 3645
HhaI GCGC 1 cut(s) 3483
Hin6I GCGC 1 cut(s) 3481
HinP1I GCGC 1 cut(s) 3481
HindIII AAGCTT 2 cut(s) 1742, 3464
HpaII CCGG 3 cut(s) 197, 2305, 3777
HphI GGTGA 7 cut(s) 1309, 1387, 2428, 2573, 3602, 3808, 3844
HspAI GCGC 1 cut(s) 3481
KpnI GGTACC 1 cut(s) 927
Ksp22I TGATCA 4 cut(s) 1027, 1042, 1870, 3427
MaeI CTAG 7 cut(s) 401, 908, 1200, 1415, 2070, 2096, 2931
MfeI CAATTG 1 cut(s) 3405
MflI RGATCY 8 cut(s) 406, 607, 961, 1126, 1312, 1816, 2062, 3205
MlyI GAGTC 4 cut(s) 179, 314, 2290, 2342
MmeI TCCRAC 2 cut(s) 2193, 2646
Mph1103I ATGCAT 2 cut(s) 1052, 2485
MroXI GAANNNNTTC 1 cut(s) 1621
MslI CAYNNNNRTG 3 cut(s) 949, 2528, 3255
MspA1I CMGCKG 2 cut(s) 1160, 3341
MspI CCGG 3 cut(s) 197, 2305, 3777
MspR9I CCNGG 5 cut(s) 87, 1568, 2306, 3112, 3921
MunI CAATTG 1 cut(s) 3405
Mva1269I GAATGC 3 cut(s) 392, 2252, 3653
MvaI CCWGG 4 cut(s) 87, 1568, 3112, 3921
MvnI CGCG 2 cut(s) 3483, 3597
NciI CCSGG 1 cut(s) 2306
NcoI CCATGG 1 cut(s) 3567
NdeI CATATG 2 cut(s) 1078, 2485
NlaIV GGNNCC 4 cut(s) 925, 1128, 1485, 3287
NmuCI GTSAC 4 cut(s) 318, 903, 2641, 3590
NsiI ATGCAT 2 cut(s) 1052, 2485
NspI RCATGY 5 cut(s) 689, 890, 3124, 3877, 3997
PaeI GCATGC 1 cut(s) 3997
PaeR7I CTCGAG 1 cut(s) 710
PagI TCATGA 2 cut(s) 1941, 3090
PciI ACATGT 1 cut(s) 3873
PcsI WCGNNNNNNNCGW 2 cut(s) 2453, 3675
PctI GAATGC 3 cut(s) 392, 2252, 3653
PdmI GAANNNNTTC 1 cut(s) 1621
Pfl23II CGTACG 1 cut(s) 191
PflMI CCANNNNNTGG 4 cut(s) 476, 2413, 3920, 3989
PfoI TCCNGGA 1 cut(s) 2304
PinAI ACCGGT 1 cut(s) 3776
Ple19I CGATCG 1 cut(s) 2331
PleI GAGTC 4 cut(s) 178, 313, 2289, 2341
PmaCI CACGTG 1 cut(s) 3257
PmlI CACGTG 1 cut(s) 3257
PpsI GAGTC 4 cut(s) 178, 313, 2289, 2341
Ppu21I YACGTR 1 cut(s) 3257
PpuMI RGGWCCY 1 cut(s) 706
PscI ACATGT 1 cut(s) 3873
PshAI GACNNNNGTC 1 cut(s) 704
PshBI ATTAAT 3 cut(s) 1967, 2088, 3213
PsiI TTATAA 1 cut(s) 3171
Psp124BI GAGCTC 2 cut(s) 1977, 2475
Psp1406I AACGTT 1 cut(s) 1830
Psp5II RGGWCCY 1 cut(s) 706
Psp6I CCWGG 4 cut(s) 85, 1566, 3110, 3919
PspCI CACGTG 1 cut(s) 3257
PspEI GGTNACC 1 cut(s) 3590
PspFI CCCAGC 2 cut(s) 236, 3281
PspGI CCWGG 4 cut(s) 85, 1566, 3110, 3919
PspLI CGTACG 1 cut(s) 191
PspN4I GGNNCC 4 cut(s) 925, 1128, 1485, 3287
PspPI GGNCC 4 cut(s) 706, 2111, 2628, 3941
PspPPI RGGWCCY 1 cut(s) 706
PstI CTGCAG 3 cut(s) 699, 2031, 2119
PstNI CAGNNNCTG 2 cut(s) 2035, 3698
PsuI RGATCY 8 cut(s) 406, 607, 961, 1126, 1312, 1816, 2062, 3205
PvuI CGATCG 1 cut(s) 2331
PvuII CAGCTG 2 cut(s) 1160, 3341
RseI CAYNNNNRTG 3 cut(s) 949, 2528, 3255
SacI GAGCTC 2 cut(s) 1977, 2475
Sau96I GGNCC 4 cut(s) 706, 2111, 2628, 3941
ScaI AGTACT 1 cut(s) 1022
SchI GAGTC 4 cut(s) 179, 314, 2290, 2342
ScrFI CCNGG 5 cut(s) 87, 1568, 2306, 3112, 3921
SfcI CTRYAG 4 cut(s) 695, 2027, 2115, 2241
Sfr274I CTCGAG 1 cut(s) 710
SinI GGWCC 3 cut(s) 706, 2111, 3941
SlaI CTCGAG 1 cut(s) 710
SmiMI CAYNNNNRTG 3 cut(s) 949, 2528, 3255
SmlI CTYRAG 2 cut(s) 710, 2388
SmoI CTYRAG 2 cut(s) 710, 2388
SpeI ACTAGT 1 cut(s) 907
SphI GCATGC 1 cut(s) 3997
SsiI CCGC 8 cut(s) 176, 530, 645, 899, 1925, 1958, 2348, 3595
SspI AATATT 2 cut(s) 1679, 2989
SspMI CTAG 7 cut(s) 401, 908, 1200, 1415, 2070, 2096, 2931
SstI GAGCTC 2 cut(s) 1977, 2475
StyD4I CCNGG 5 cut(s) 85, 1566, 2304, 3110, 3919
StyI CCWWGG 2 cut(s) 2668, 3567
TaqI TCGA 9 cut(s) 711, 790, 1188, 1516, 2106, 2331, 2380, 3004, 3786
TatI WGTACW 5 cut(s) 141, 1020, 1089, 1146, 1329
TauI GCSGC 3 cut(s) 901, 1928, 1960
TscAI CASTG 5 cut(s) 397, 1485, 2017, 2473, 2821
TseFI GTSAC 4 cut(s) 318, 903, 2641, 3590
Tsp45I GTSAC 4 cut(s) 318, 903, 2641, 3590
TspGWI ACGGA 5 cut(s) 1337, 2055, 2246, 3230, 3755
TspRI CASTG 5 cut(s) 397, 1485, 2017, 2473, 2821
Van91I CCANNNNNTGG 4 cut(s) 476, 2413, 3920, 3989
VneI GTGCAC 3 cut(s) 1574, 2889, 3179
VpaK11BI GGWCC 3 cut(s) 706, 2111, 3941
VspI ATTAAT 3 cut(s) 1967, 2088, 3213
XagI CCTNNNNNAGG 2 cut(s) 1493, 2588
XapI RAATTY 7 cut(s) 183, 212, 1210, 1850, 2246, 2766, 2819
XbaI TCTAGA 1 cut(s) 2069
XceI RCATGY 5 cut(s) 689, 890, 3124, 3877, 3997
XcmI CCANNNNNNNNNTGG 2 cut(s) 572, 2365
XhoI CTCGAG 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 1621
XspI CTAG 7 cut(s) 401, 908, 1200, 1415, 2070, 2096, 2931
ZrmI AGTACT 1 cut(s) 1022
Zsp2I ATGCAT 2 cut(s) 1052, 2485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.