Rorug01G0357300

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002740
Physical Location & Seq
Forward (+)
47370751 .. 47371561
811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0357300.1

Sequence Viewer

Length: 717 bp
ATGTCCACATTCATAGATGCACAAAGAGAAACCGACATCTTCTTGAAGCTCACAATTGACCGAGAGAACAGGAAGGTATTGTTTGCAGAAGCAAACAAGGACTTTGTTGACAATCTGGTGGGATTCATGACTTTTCCTACCTCTGCCATGATTAAGCTTAGCCCTGAGCCTTTTGGCAAGCTAAAAAATGTTAAAAATAGCATTGAGAACATGACCGAGTATTACAATCCGATGAAGGCTTCTCTCCTGAATACAATGCCACCGGCTCACCGCAATCGGCACGAGCATGCCCTGTGTCCCCTTGATCCCTCATCACTTGAGAATATGCCCTTTTATGTATGTGAAGAGTGTATTACTACCCGAGGTAAGCCCTATTATGTGGCCAACGATCCCACAGTCTTGTGCCCTACTTGTAACCATGCCATGACTCAAGGTGCAAGTTATTGCGGTACACCTTCTGAAACAGCCAATGAAGGGGGAGGTTTTGTTCTACAGCGAGCGAAATACATTATTACTGATGATTTGAATGTTCACCCTCTTCTCACGGCTTCTCTCATCACAAGGATAATTCTTGGAGCTAATTCTCAGCATGTTGAAGAGGTTACCGTGAACGTTTCCCATAAGAAGCTGGTGATGCTGGAGTTGTTAAAAAAGGCTATGCAAAACTCCGACACGGTGTTGTCAGATGTATTTTTCTCGGATAGATGGATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

238

Amino Acids

26.74

Weight (kDa)

5.98

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 10 - 234 8.4e-25 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 271, 447
AclI AACGTT 1 cut(s) 612
AclWI GGATC 2 cut(s) 299, 383
AcoI YGGCCR 1 cut(s) 381
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 1 cut(s) 474
AgsI TTSAA 3 cut(s) 46, 526, 596
AloI GAACNNNNNNTCC 2 cut(s) 471, 503
AluBI AGCT 5 cut(s) 49, 157, 181, 578, 628
AluI AGCT 5 cut(s) 49, 157, 181, 578, 628
AlwI GGATC 2 cut(s) 299, 383
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 260, 524, 643
AvaI CYCGRG 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 407
BalI TGGCCA 1 cut(s) 383
BauI CACGAG 1 cut(s) 281
BccI CCATC 1 cut(s) 699
BceAI ACGGC 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 491
BlpI GCTNAGC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 360
BmsI GCATC 2 cut(s) 7, 624
BpmI CTGGAG 1 cut(s) 659
Bpu10I CCTNAGC 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 158
BpuEI CTTGAG 2 cut(s) 338, 414
BsaJI CCNNGG 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse118I RCCGGY 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMII CTCAG 2 cut(s) 156, 599
BseSI GKGCMC 1 cut(s) 407
BshFI GGCC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 474
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 2 cut(s) 304, 388
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 2 cut(s) 271, 447
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 2 cut(s) 157, 598
BspHI TCATGA 1 cut(s) 126
BspPI GGATC 2 cut(s) 299, 383
BsrFI RCCGGY 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 2 cut(s) 304, 388
BssSI CACGAG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 281
Bst4CI ACNGT 3 cut(s) 397, 607, 676
Bst6I CTCTTC 3 cut(s) 339, 543, 591
BstC8I GCNNGC 3 cut(s) 179, 288, 498
BstDEI CTNAG 3 cut(s) 158, 165, 585
BstEII GGTNACC 1 cut(s) 601
BstKTI GATC 2 cut(s) 307, 391
BstMBI GATC 2 cut(s) 304, 388
BstMWI GCNNNNNNNGC 1 cut(s) 634
BstNSI RCATGY 2 cut(s) 290, 593
BstPI GGTNACC 1 cut(s) 601
BstSFI CTRYAG 1 cut(s) 491
BstSLI GKGCMC 1 cut(s) 407
BsuRI GGCC 1 cut(s) 383
Cac8I GCNNGC 3 cut(s) 179, 288, 498
CciI TCATGA 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 262
Csp6I GTAC 1 cut(s) 450
CviAII CATG 7 cut(s) 127, 148, 211, 287, 419, 424, 590
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 3 cut(s) 158, 165, 585
DpnI GATC 2 cut(s) 306, 390
DpnII GATC 2 cut(s) 304, 388
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 3 cut(s) 339, 543, 591
EarI CTCTTC 3 cut(s) 339, 543, 591
Eco88I CYCGRG 1 cut(s) 360
Eco91I GGTNACC 1 cut(s) 601
EcoO65I GGTNACC 1 cut(s) 601
FaeI CATG 7 cut(s) 130, 151, 214, 290, 422, 427, 593
FaqI GGGAC 1 cut(s) 282
FatI CATG 7 cut(s) 126, 147, 210, 286, 418, 423, 589
GsuI CTGGAG 1 cut(s) 659
HaeIII GGCC 1 cut(s) 383
HapII CCGG 1 cut(s) 263
Hin1II CATG 7 cut(s) 130, 151, 214, 290, 422, 427, 593
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 2 cut(s) 123, 427
HpaII CCGG 1 cut(s) 263
HphI GGTGA 3 cut(s) 260, 524, 643
Hpy166II GTNNAC 5 cut(s) 6, 109, 452, 532, 610
Hpy188I TCNGA 5 cut(s) 231, 460, 670, 685, 700
Hpy188III TCNNGA 3 cut(s) 43, 127, 247
Hpy8I GTNNAC 5 cut(s) 6, 109, 452, 532, 610
HpyAV CCTTC 4 cut(s) 67, 229, 465, 467
HpyCH4III ACNGT 3 cut(s) 397, 607, 676
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 4 cut(s) 20, 86, 437, 661
HpyF10VI GCNNNNNNNGC 1 cut(s) 634
HpyF3I CTNAG 3 cut(s) 158, 165, 585
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 7 cut(s) 130, 151, 214, 290, 422, 427, 593
Kzo9I GATC 2 cut(s) 304, 388
LmnI GCTCC 1 cut(s) 575
LpnPI CCDG 8 cut(s) 55, 101, 177, 260, 276, 305, 614, 623
LweI GCATC 2 cut(s) 7, 624
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 413, 601
MalI GATC 2 cut(s) 306, 390
MboI GATC 2 cut(s) 304, 388
MboII GAAGA 4 cut(s) 31, 356, 530, 608
MfeI CAATTG 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 407
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 3 cut(s) 54, 567, 580
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 1 cut(s) 693
MnlI CCTC 6 cut(s) 151, 319, 356, 473, 546, 592
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
MseI TTAA 3 cut(s) 153, 192, 647
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 1 cut(s) 263
MunI CAATTG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 634
NdeII GATC 2 cut(s) 304, 388
NlaIII CATG 7 cut(s) 130, 151, 214, 290, 422, 427, 593
NspI RCATGY 2 cut(s) 290, 593
PaeI GCATGC 1 cut(s) 290
PagI TCATGA 1 cut(s) 126
PfeI GAWTC 1 cut(s) 123
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp1406I AACGTT 1 cut(s) 612
PspEI GGTNACC 1 cut(s) 601
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 3 cut(s) 153, 192, 647
Sau3AI GATC 2 cut(s) 304, 388
SchI GAGTC 1 cut(s) 421
SduI GDGCHC 1 cut(s) 407
SfaNI GCATC 2 cut(s) 7, 624
SfcI CTRYAG 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 317, 429
SmoI CTYRAG 2 cut(s) 317, 429
SphI GCATGC 1 cut(s) 290
Sse9I AATT 3 cut(s) 54, 567, 580
SsiI CCGC 2 cut(s) 271, 447
TaaI ACNGT 3 cut(s) 397, 607, 676
TaiI ACGT 1 cut(s) 615
TaqII GACCGA 2 cut(s) 75, 230
TasI AATT 3 cut(s) 54, 567, 580
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 3 cut(s) 153, 192, 647
Tru9I TTAA 3 cut(s) 153, 192, 647
TspDTI ATGAA 3 cut(s) 115, 248, 486
XceI RCATGY 2 cut(s) 290, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.