Rh1CG341800

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002740
Physical Location & Seq
Forward (+)
61621907 .. 61631590
9684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG341800.1

Sequence Viewer

Length: 4899 bp
ATGGCGGCGGCTAACGCTCCGATCACCATGAAGGAGGCCTTAACGCTTCCGAGCGTTGGGATTAATCCGCAATTCATAACGTTTACCCATGTTACTATGGAGTCCGATAAGTACATATGCGTTCGGGAAACAGCGCCGCAGAATAGTATTGTGATTATTGATATGAGTATGCCGAATCAGCCTTTGAGGAGGCCTATCACCGCCGACTCTGCACTTATGAATCCAAACTCCAAAATCCTTGCTTTGAAAGCTCAAGTCCAGGGAACTACTCAGGACCACCTTCAAATTTTTAACATTGAGATGAAAGCAAAACTGAAATCACACCTTATGCCTGAGCAGAGGCCACAATTGGTTAAAGGGAACTTGCAACTCTTCTCGGTGGATCAGCAGCGCAGTCAAGCTCTTGAAGCGCATGCCGCATCCTTTGCCCAGTACAAGGTTCCAGGGAATGAAAATCCTTCCATTCTGATTTCCTTTGCCACCAAGACACTCAATGCTGGACAGATTACATCCAAGTTACATGTTATTGAGCTTGGTGCCCAGCCAGGGAAGCCATCTTTTACAAAGAAACAAGCAGATCTTTTCTTTCCTCCAGATTTTGCAGATGATTTCCCAGTTGCCATGCAGATGTCTCACAAGTACAGTTTGATTTATGTAATTACAAAGCTGGGGCTTCTATTTGTATACGACTTAGAGACAGCTAGTGCAGTTTACAGAAATAGAATTAGTCCAGATCCAATTTTCTTGACGACAGAAGCTTCATCAGTGGGAGGGTTTTATGCTGTTAATAGGCGGGGCCAGGTGTTGTTGGCTACCATTAATGAGCAAACAATTGTGCCCTTTGTCAGTGGTCAGTTAAACAATTTGGAGCTTGCCGTCAATCTGGCAAAAAGAGGAAATCTTCCTGGTGCTGAGAATCTGGTTGTCCAGCGTTTCCAAGAACTGTTTGCCCAAACCAAGTACAAAGAAGCTGCCGAACTGGCTGCTGAGTCCCCGCAAGGAATTCTTCGTACGCCGGATACAGTTGCTAAATTTCAGAGTGTTCCTGTCCAAGCTGGGCAAACACCCCCTTTGTTGCAATACTTCGGGACACTCTTAACGAGAGGGAAGCTCAATGCCTTTGAGTCATTGGAATTGTCACGTCTTGTTGTGAACCAGAACAAGAAGAATCTTTTGGAAAACTGGTTGGCAGAGGACAAACTGGAATGCAGTGAGGAACTAGGAGATCTTGTGAAGACTGTGGATAATGATCTGGCTTTGAAAATATACATTAAAGCCAGAGCAACTCCAAAAGTTGTTGCAGCTTTTGCCGAGCGAAGGGAGTTTGACAAAATCCTGATCTACTCAAAGCAGGTTGGCTACACACCTGACTATCTGTTCCTTTTGCAAACAATTCTCCGAGCAGACCCGCAGGGTGCTGTTAATTTTGCATTGATGATGTCCCAAATGGAGGGTGGTTGTCCTGTTGATTACAACACCATTACAGATCTCTTTCTTCAGAGGAATCTGATTCGTGAGGCAACCGCTTTTCTACTGGATGTTTTGAAGCCAAATCTCCCTGAACATGCCTTCCTGCAGACAAAGGTCCTCGAGATTAACTTGGTTACTTTTCCAAATGTGGCTGATGCCATTTTAGCCAATGGTATGTTCAGTCATTATGATCGTCCTCGAATTGCCCAGTTATGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAACACTACTCCGAGTTGCCTGATATTAAACGTGTCATAGTGAATACACATGCAATAGAGCCGCAGTCACTAGTAGAGTTTTTTGGTACCTTGTCAAAGGAATGGGCATTGGAGTGTATGAAGGATCTCTTGCTGGTCAATTTGAGAGGCAACCTTCAGATAATTGTGCAGGTTGCTAAGGAGTACTCTGATCAGTTGGGTACTGATCAATGCATGAAGCTATTTGAGCAGTTCAAGTCATATGAAGGATTGTACTTCTTCCTCGGATCATTTTTGAGTTCAAGTGAGGATCCTGAAATCCACTTCAAGTACATTGAGGCAGCTGCCAAAACTGGACAAATTAAAGAGGTCGAGAGAGTTACTAGAGAATCAAATTTCTATGATGCAGAGAAAACAAAGAACTTTTTAATGGAAGCTAAGCTCCCTGATGCACGACCCCTTATCAATGTTTGCGACCGTTTTGGTTTTGTTCCAGATCTCACCCACTACTTGTACACAAACAATATGCTCCGTTACATTGAGGGTTACGTTCAAAAGGTGAATCCTTCAAATGCTCCATTAGTTGTGGGACAGTTGCTAGATGACGAGTGCCCTGAAGATTTTATCAAAGGCTTGATCCTTTCTGTACGTTCATTGCTTCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGACTTCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAGGATGTGCACGTCCACAATGCGTTGGGTAAAATCATCATTGATAGTGGAAACAATCCTGAACACTTCCTTACCACAAACCCATATTATGATTCTCGTGTTGTGGGTAAATATTGTGAGAAACGTGATCCTACTCTGGCTGTTGTTGCTTATCGACGTGGGCAATGCGATGATGAGCTTATCAATGTTACAAATAAAAACTCTTTGTTCAAATTACAAGCAAGATATGTTGTTGAGAGGATGGATGAGGATCTTTGGGCTAAAGTTCTTGACCCTGAGAATGAATTTAGAAGACAACTTATCGATCAAGTGGTTTCTACTGCCTTGCCTGAAAGCAAGAGCCCAGAACAAGTTTCTGCGGCTGTTAAGGCTTTCATGACTGCTGATTTGCCCCATGAATTAATTGAGCTTCTTGAAAAGATTGTGCTTCAAAACTCTGCCTTCAGTGGGAACTTTAATCTGCAAAATCTGCTCATTTTGACAGCCATCAAGGCAGATCCGTCTAGAGTTATGGATTATATTAATAGGCTAGACAATTTCGATGGACCTGCAGTTGGGGAAGTAGCTGTGGAAGCCCAACTGTATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTGAATGTCCAAGCTGTCAATGTCTTGCTGGATAATATCCGAAGCATTGATAGGGCTGTAGAATTTGCATTCCGTGTTGAAGAGGATGCTGTTTGGAGTCAGGTTGGAAAGGCTCAACTCCGGGAGGGACTTGTGAGTGATGCGATTGAGTCATTTATTCGGGCGGATGATGCCACACAATTCTTGGATGTTATTCGAGCTTCTGAAGATGCGGATGTTTACCATGACTTGGTGAGATACCTTCTGATGGTTAGGCAGAAGACAAAAGAGCCGAAGGTGGACAGTGAACTCATTTATGCATATGCCAAGATTGATAGGCTGGCTGACATTGAAGAGTTCATTCTTATGCCAAATGTTGCCAATCTTCAAAATGTTGGTGATCGCCTATATGATGAGACCCTCTATGAGGCTGCAAAAATAATTTATGCTTTTATATCCAACTGGGCCAAGTTGGCTGTCACACTTGTCAAGCTCAAACAATTCCAAGGTGCTGTTGATGCAGCACGAAAAGCCAATAGTGCAAAGACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCTGAGGAGTTCCGCTTAGCTCAAATTTGTGGTCTCAACATCATTATACAGGTGGATGATTTGGAGGAGGTCAGTGAATTCTACCAGAATAGAGGATGCTTCAATGAGCTAATATCTCTAATGGAAAGTGGTCTTGGCTTAGAACGTGCACACATGGGAATCTTTACTGAATTGGGGGTTCTGTATGCTAGATACCGTCCTGAGAAACTTATGGAGCACATCAAACTGTTCTCAACTCGTTTAAATATTCCCAAGCTCATTCGAGCTTGTGATGAGCAGCAGCATTGGAAGGAGCTAACCTATCTATATATTCAATATGATGAGTTTGATAATGCTGCAACAACCATCATGAATCATTCCCCTGAAGCCTGGGATCACATGCAGTTCAAAGATGTGGCAGTTAAAGTTGCAAATGTGGAGCTATATTATAAGGCTGTGCACTTTTACTTGCAAGAGCATCCAGATCTCATTAATGATATTCTAAATGTGCTTGCTCTCCGTGTAGATCATACACGTGTGGTGGACATTATGCGAAAGGCTGGGCACCTACTCCTTGTGAAGCCCTACATGGTTGCTGTTCAGAGCAACAATGTCTCAGCTGTGAATGAGGCTTTGAATGAGATATACGTTGAAGAGGAAGACTATGAAAGATTGCGTGAATCAATTGATTTACATGACAGCTTTGATCAAATAGGTCTTGCTCAGAAGATTGAAAAACACGAGCTTCTGGAAATGAGGCGCGTTGCTGCTTATATTTACAAGAAAGCTGGAAGGTGGAAGCAGTCCATTGCATTATCAAAGAAAGACAAACTTTACAAAGATGCCATGGAGACAGCCTCACAGTCTGGTGACCGCGAACTTGCAGAGGAATTGCTTGTTTACTTCATTGAACAGGGAAAGAAAGAATGCTTTGCTTCATGCCTCTTCGTCTGTTACGATTTGATTAGGCCGGATACTGCCCTTGAACTTGCTTGGATGAACAACATGATAGACTTTGCCTTCCCATATCTGTTGCAGTTTATCCGTGAATACACTGGTAAAGTCGATGAATTGGTGAAGGACAGAATTGAGGCCCAGAATGAGGTCAAGGTGAAGGAGAAGGAAGAGAAAGAGGTTATAGCACAGCAGAACATGTATGCACAGTTGTTGCCTCTTGCTTTGCCTGCTCCACCAATGCCTGGTATGGGAGGAGGGTATGGTCCTCCGCCTCCAATGGGAGGAATGGGGATGCCTCCAATGCCACCTTATGGCATGCCACCAATGGGCAGTAGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

1632

Amino Acids

184.99

Weight (kDa)

5.27

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clathrin_propel PF01394 20 - 55 2.8e-06 Clathrin propeller repeat
Clathrin-link PF09268 275 - 298 8.9e-09 Clathrin, heavy-chain linker
Clathrin_H_link PF13838 300 - 365 3.8e-28 Clathrin-H-link
Clathrin PF00637 488 - 623 7.5e-25 Region in Clathrin and VPS
Clathrin PF00637 632 - 772 7.1e-27 Region in Clathrin and VPS
Clathrin PF00637 781 - 915 1.6e-32 Region in Clathrin and VPS
Clathrin PF00637 924 - 1062 3.9e-32 Region in Clathrin and VPS
Clathrin PF00637 1075 - 1212 1e-30 Region in Clathrin and VPS
Clathrin PF00637 1221 - 1363 2.1e-27 Region in Clathrin and VPS
Clathrin PF00637 1369 - 1510 3.5e-32 Region in Clathrin and VPS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4050
Acc36I ACCTGC 3 cut(s) 1342, 1876, 3001
Acc65I GGTACC 1 cut(s) 1802
AccB1I GGYRCC 3 cut(s) 536, 1802, 4164
AccB7I CCANNNNNTGG 3 cut(s) 3292, 4799, 4868
AccI GTMKAC 1 cut(s) 684
AccII CGCG 2 cut(s) 4362, 4476
AclI AACGTT 1 cut(s) 80
AcsI RAATTY 8 cut(s) 285, 1002, 1031, 2089, 2729, 3125, 3645, 3698
AcuI CTGAAG 6 cut(s) 1481, 1856, 2331, 2872, 3288, 4005
AcvI CACGTG 1 cut(s) 4136
AflIII ACRYGT 5 cut(s) 520, 1747, 4133, 4135, 4752
AhlI ACTAGT 1 cut(s) 1786
AjiI CACGTC 3 cut(s) 1142, 2458, 2603
AjnI CCWGG 8 cut(s) 258, 442, 544, 798, 904, 2445, 3989, 4798
AjuI GAANNNNNNNTTGG 6 cut(s) 1157, 1189, 1631, 1663, 3738, 3770
AloI GAACNNNNNNTCC 2 cut(s) 1554, 1586
Alw21I GWGCWC 4 cut(s) 2457, 3772, 3840, 4062
Alw26I GTCTC 6 cut(s) 636, 689, 3452, 3659, 4219, 4445
Alw44I GTGCAC 3 cut(s) 2453, 3768, 4058
Ama87I CYCGRG 1 cut(s) 1589
AoxI GGCC 7 cut(s) 36, 191, 341, 796, 3507, 4568, 4692
ApaLI GTGCAC 3 cut(s) 2453, 3768, 4058
ApoI RAATTY 8 cut(s) 285, 1002, 1031, 2089, 2729, 3125, 3645, 3698
ArsI GACNNNNNNTTYG 4 cut(s) 2815, 2847, 3637, 3669
AseI ATTAAT 5 cut(s) 63, 819, 2846, 2967, 4092
Asp718I GGTACC 1 cut(s) 1802
AspLEI GCGC 4 cut(s) 136, 393, 412, 4362
AspS9I GGNCC 7 cut(s) 274, 796, 1585, 2990, 3507, 4693, 4820
AsuC2I CCSGG 1 cut(s) 3185
AsuHPI GGTGA 9 cut(s) 16, 190, 2188, 2266, 3307, 3452, 4481, 4687, 4723
AvaI CYCGRG 1 cut(s) 1589
AvaII GGWCC 4 cut(s) 274, 1585, 2990, 4820
BaeGI GKGCMC 7 cut(s) 541, 840, 2309, 2457, 3772, 4062, 4167
BamHI GGATCC 1 cut(s) 2005
BanI GGYRCC 3 cut(s) 536, 1802, 4164
BanII GRGCYC 2 cut(s) 2367, 2789
BauI CACGAG 2 cut(s) 2541, 4340
BbrPI CACGTG 1 cut(s) 4136
BbsI GAAGAC 4 cut(s) 1241, 2743, 3329, 4266
Bbv12I GWGCWC 4 cut(s) 2457, 3772, 3840, 4062
BbvCI CCTCAGC 1 cut(s) 3624
BccI CCATC 6 cut(s) 562, 2680, 2939, 2981, 3304, 3974
BceAI ACGGC 1 cut(s) 860
BcgI CGANNNNNNTGC 4 cut(s) 965, 999, 2975, 3009
BciT130I CCWGG 8 cut(s) 260, 444, 546, 800, 906, 2447, 3991, 4800
BciVI GTATCC 2 cut(s) 1012, 4567
BclI TGATCA 3 cut(s) 1906, 1921, 4306
BcnI CCSGG 1 cut(s) 3185
BcoDI GTCTC 6 cut(s) 636, 689, 3452, 3659, 4219, 4445
BcuI ACTAGT 1 cut(s) 1786
BfaI CTAG 8 cut(s) 702, 1220, 1787, 2079, 2294, 2949, 2975, 3810
BfmI CTRYAG 3 cut(s) 1574, 2994, 3120
BfoI RGCGCY 1 cut(s) 137
BfuAI ACCTGC 3 cut(s) 1342, 1876, 3001
BfuI GTATCC 2 cut(s) 1012, 4567
BglI GCCNNNNNGGC 3 cut(s) 980, 2936, 3515
BglII AGATCT 5 cut(s) 577, 1225, 1486, 2191, 4084
BlpI GCTNAGC 2 cut(s) 2133, 3637
BmcAI AGTACT 1 cut(s) 1901
Bme1390I CCNGG 9 cut(s) 260, 444, 546, 800, 906, 2447, 3185, 3991, 4800
Bme18I GGWCC 4 cut(s) 274, 1585, 2990, 4820
BmeT110I CYCGRG 1 cut(s) 1589
BmgBI CACGTC 3 cut(s) 1142, 2458, 2603
BmgT120I GGNCC 7 cut(s) 274, 796, 1585, 2990, 3507, 4693, 4820
BmiI GGNNCC 7 cut(s) 441, 538, 797, 1804, 2007, 2364, 4166
BmrFI CCNGG 9 cut(s) 260, 444, 546, 800, 906, 2447, 3185, 3991, 4800
BmrI ACTGGG 4 cut(s) 424, 608, 1672, 3514
BmuI ACTGGG 4 cut(s) 424, 608, 1672, 3514
BoxI GACNNNNGTC 1 cut(s) 1583
BpiI GAAGAC 4 cut(s) 1241, 2743, 3329, 4266
BplI GAGNNNNNCTC 4 cut(s) 1095, 1127, 4442, 4474
BpmI CTGGAG 1 cut(s) 576
Bpu10I CCTNAGC 3 cut(s) 333, 1893, 3624
Bpu1102I GCTNAGC 2 cut(s) 2133, 3637
BpuEI CTTGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 3185
Bsa29I ATCGAT 1 cut(s) 2748
BsaAI YACGTR 1 cut(s) 4136
BsaBI GATNNNNATC 2 cut(s) 1248, 2694
BsaI GGTCTC 2 cut(s) 3452, 3659
BsaJI CCNNGG 7 cut(s) 259, 443, 545, 1978, 3547, 3990, 4446
BsaXI ACNNNNNCTCC 2 cut(s) 1215, 1245
Bse3DI GCAATG 3 cut(s) 2348, 2615, 4407
Bse8I GATNNNNATC 2 cut(s) 1248, 2694
BseBI CCWGG 8 cut(s) 260, 444, 546, 800, 906, 2447, 3991, 4800
BseCI ATCGAT 1 cut(s) 2748
BseDI CCNNGG 7 cut(s) 259, 443, 545, 1978, 3547, 3990, 4446
BseJI GATNNNNATC 2 cut(s) 1248, 2694
BseMI GCAATG 3 cut(s) 2348, 2615, 4407
BseRI GAGGAG 4 cut(s) 202, 3641, 3701, 4824
BseSI GKGCMC 7 cut(s) 541, 840, 2309, 2457, 3772, 4062, 4167
BseYI CCCAGC 4 cut(s) 540, 667, 1055, 4160
BsgI GTGCAG 3 cut(s) 195, 726, 1904
Bsh1236I CGCG 2 cut(s) 4362, 4476
Bsh1285I CGRYCG 1 cut(s) 2173
BshFI GGCC 7 cut(s) 38, 193, 343, 798, 3509, 4570, 4694
BshNI GGYRCC 3 cut(s) 536, 1802, 4164
BshVI ATCGAT 1 cut(s) 2748
BsiEI CGRYCG 1 cut(s) 2173
BsiHKAI GWGCWC 4 cut(s) 2457, 3772, 3840, 4062
BsiHKCI CYCGRG 1 cut(s) 1589
BsiSI CCGG 3 cut(s) 1016, 3184, 4571
BsiWI CGTACG 1 cut(s) 1010
BslFI GGGAC 5 cut(s) 976, 1102, 1426, 2298, 3204
BsmAI GTCTC 6 cut(s) 636, 689, 3452, 3659, 4219, 4445
BsmFI GGGAC 5 cut(s) 976, 1102, 1426, 2298, 3204
BsmI GAATGC 3 cut(s) 1211, 3131, 4532
BsnI GGCC 7 cut(s) 38, 193, 343, 798, 3509, 4570, 4694
Bso31I GGTCTC 2 cut(s) 3452, 3659
BsoBI CYCGRG 1 cut(s) 1589
Bsp1407I TGTACA 1 cut(s) 2208
Bsp1720I GCTNAGC 2 cut(s) 2133, 3637
Bsp19I CCATGG 1 cut(s) 4446
BspANI GGCC 7 cut(s) 38, 193, 343, 798, 3509, 4570, 4694
BspDI ATCGAT 1 cut(s) 2748
BspFNI CGCG 2 cut(s) 4362, 4476
BspHI TCATGA 2 cut(s) 2820, 3969
BspLI GGNNCC 7 cut(s) 441, 538, 797, 1804, 2007, 2364, 4166
BspMAI CTGCAG 2 cut(s) 1578, 2998
BspMI ACCTGC 3 cut(s) 1342, 1876, 3001
BspT107I GGYRCC 3 cut(s) 536, 1802, 4164
BspTNI GGTCTC 2 cut(s) 3452, 3659
BsrDI GCAATG 3 cut(s) 2348, 2615, 4407
BsrGI TGTACA 1 cut(s) 2208
BssECI CCNNGG 7 cut(s) 259, 443, 545, 1978, 3547, 3990, 4446
BssNAI GTATAC 1 cut(s) 685
BssSI CACGAG 2 cut(s) 2541, 4340
BssT1I CCWWGG 2 cut(s) 3547, 4446
Bst1107I GTATAC 1 cut(s) 685
Bst2BI CACGAG 2 cut(s) 2541, 4340
Bst2UI CCWGG 8 cut(s) 260, 444, 546, 800, 906, 2447, 3991, 4800
Bst6I CTCTTC 7 cut(s) 377, 2381, 3138, 3390, 4248, 4550, 4719
BstAPI GCANNNNNTGC 3 cut(s) 425, 1307, 2914
BstAUI TGTACA 1 cut(s) 2208
BstBAI YACGTR 1 cut(s) 4136
BstC8I GCNNGC 7 cut(s) 414, 873, 1710, 3384, 4113, 4785, 4874
BstDSI CCRYGG 1 cut(s) 4446
BstEII GGTNACC 1 cut(s) 4469
BstENI CCTNNNNNAGG 2 cut(s) 2372, 3467
BstFNI CGCG 2 cut(s) 4362, 4476
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 4 cut(s) 136, 393, 412, 4362
BstMAI GTCTC 6 cut(s) 636, 689, 3452, 3659, 4219, 4445
BstMCI CGRYCG 1 cut(s) 2173
BstNI CCWGG 8 cut(s) 260, 444, 546, 800, 906, 2447, 3991, 4800
BstNSI RCATGY 7 cut(s) 416, 524, 1568, 1769, 4003, 4756, 4876
BstPAI GACNNNNGTC 1 cut(s) 1583
BstPI GGTNACC 1 cut(s) 4469
BstSCI CCNGG 9 cut(s) 258, 442, 544, 798, 904, 2445, 3183, 3989, 4798
BstSFI CTRYAG 3 cut(s) 1574, 2994, 3120
BstSLI GKGCMC 7 cut(s) 541, 840, 2309, 2457, 3772, 4062, 4167
BstUI CGCG 2 cut(s) 4362, 4476
BstV2I GAAGAC 4 cut(s) 1241, 2743, 3329, 4266
BstZ17I GTATAC 1 cut(s) 685
Bsu15I ATCGAT 1 cut(s) 2748
BsuI GTATCC 2 cut(s) 1012, 4567
BsuRI GGCC 7 cut(s) 38, 193, 343, 798, 3509, 4570, 4694
BsuTUI ATCGAT 1 cut(s) 2748
BtgI CCRYGG 1 cut(s) 4446
BtgZI GCGATG 1 cut(s) 2628
BtrI CACGTC 3 cut(s) 1142, 2458, 2603
BtsI GCAGTG 1 cut(s) 1216
BtsIMutI CAGTG 8 cut(s) 771, 853, 1216, 2364, 2896, 3352, 3700, 4653
BveI ACCTGC 3 cut(s) 1342, 1876, 3001
Cac8I GCNNGC 7 cut(s) 414, 873, 1710, 3384, 4113, 4785, 4874
CciI TCATGA 2 cut(s) 2820, 3969
CfoI GCGC 4 cut(s) 136, 393, 412, 4362
Cfr13I GGNCC 7 cut(s) 274, 796, 1585, 2990, 3507, 4693, 4820
ClaI ATCGAT 1 cut(s) 2748
DraI TTTAAA 1 cut(s) 3864
Eam1104I CTCTTC 7 cut(s) 377, 2381, 3138, 3390, 4248, 4550, 4719
EarI CTCTTC 7 cut(s) 377, 2381, 3138, 3390, 4248, 4550, 4719
EciI GGCGGA 2 cut(s) 3242, 4815
Eco130I CCWWGG 2 cut(s) 3547, 4446
Eco147I AGGCCT 2 cut(s) 38, 193
Eco24I GRGCYC 2 cut(s) 2367, 2789
Eco31I GGTCTC 2 cut(s) 3452, 3659
Eco47I GGWCC 4 cut(s) 274, 1585, 2990, 4820
Eco57I CTGAAG 6 cut(s) 1481, 1856, 2331, 2872, 3288, 4005
Eco72I CACGTG 1 cut(s) 4136
Eco88I CYCGRG 1 cut(s) 1589
Eco91I GGTNACC 1 cut(s) 4469
EcoNI CCTNNNNNAGG 2 cut(s) 2372, 3467
EcoO109I RGGNCCY 1 cut(s) 1585
EcoO65I GGTNACC 1 cut(s) 4469
EcoRI GAATTC 2 cut(s) 1002, 3698
EcoRII CCWGG 8 cut(s) 258, 442, 544, 798, 904, 2445, 3989, 4798
EcoT14I CCWWGG 2 cut(s) 3547, 4446
EcoT22I ATGCAT 2 cut(s) 1931, 3364
EcoT38I GRGCYC 2 cut(s) 2367, 2789
ErhI CCWWGG 2 cut(s) 3547, 4446
FaqI GGGAC 5 cut(s) 976, 1102, 1426, 2298, 3204
FauI CCCGC 3 cut(s) 786, 1002, 1416
FauNDI CATATG 3 cut(s) 116, 1957, 3364
FbaI TGATCA 3 cut(s) 1906, 1921, 4306
FblI GTMKAC 1 cut(s) 684
FriOI GRGCYC 2 cut(s) 2367, 2789
FspBI CTAG 8 cut(s) 702, 1220, 1787, 2079, 2294, 2949, 2975, 3810
GlaI GCGC 4 cut(s) 135, 392, 411, 4361
GsaI CCCAGC 4 cut(s) 544, 671, 1059, 4164
GsuI CTGGAG 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 7 cut(s) 38, 193, 343, 798, 3509, 4570, 4694
HapII CCGG 3 cut(s) 1016, 3184, 4571
HhaI GCGC 4 cut(s) 136, 393, 412, 4362
Hin6I GCGC 4 cut(s) 134, 391, 410, 4360
HinP1I GCGC 4 cut(s) 134, 391, 410, 4360
HindIII AAGCTT 1 cut(s) 756
HpaII CCGG 3 cut(s) 1016, 3184, 4571
HphI GGTGA 9 cut(s) 16, 190, 2188, 2266, 3307, 3452, 4481, 4687, 4723
Hpy99I CGWCG 1 cut(s) 2604
HspAI GCGC 4 cut(s) 134, 391, 410, 4360
KpnI GGTACC 1 cut(s) 1806
Ksp22I TGATCA 3 cut(s) 1906, 1921, 4306
MaeI CTAG 8 cut(s) 702, 1220, 1787, 2079, 2294, 2949, 2975, 3810
MfeI CAATTG 3 cut(s) 347, 831, 4284
MlyI GAGTC 6 cut(s) 110, 200, 998, 1133, 3169, 3221
MmeI TCCRAC 2 cut(s) 3148, 3525
Mph1103I ATGCAT 2 cut(s) 1931, 3364
MslI CAYNNNNRTG 5 cut(s) 299, 626, 1828, 3407, 4134
MspA1I CMGCKG 2 cut(s) 2039, 4220
MspI CCGG 3 cut(s) 1016, 3184, 4571
MspR9I CCNGG 9 cut(s) 260, 444, 546, 800, 906, 2447, 3185, 3991, 4800
MunI CAATTG 3 cut(s) 347, 831, 4284
Mva1269I GAATGC 3 cut(s) 1211, 3131, 4532
MvaI CCWGG 8 cut(s) 260, 444, 546, 800, 906, 2447, 3991, 4800
MvnI CGCG 2 cut(s) 4362, 4476
NciI CCSGG 1 cut(s) 3185
NcoI CCATGG 1 cut(s) 4446
NdeI CATATG 3 cut(s) 116, 1957, 3364
NlaIV GGNNCC 7 cut(s) 441, 538, 797, 1804, 2007, 2364, 4166
NmeAIII GCCGAG 1 cut(s) 1336
NmuCI GTSAC 4 cut(s) 1137, 1782, 3520, 4469
NsiI ATGCAT 2 cut(s) 1931, 3364
NspI RCATGY 7 cut(s) 416, 524, 1568, 1769, 4003, 4756, 4876
PaeI GCATGC 2 cut(s) 416, 4876
PaeR7I CTCGAG 1 cut(s) 1589
PagI TCATGA 2 cut(s) 2820, 3969
PceI AGGCCT 2 cut(s) 38, 193
PciI ACATGT 2 cut(s) 520, 4752
PcsI WCGNNNNNNNCGW 1 cut(s) 4554
PctI GAATGC 3 cut(s) 1211, 3131, 4532
Pfl23II CGTACG 1 cut(s) 1010
PflMI CCANNNNNTGG 3 cut(s) 3292, 4799, 4868
PfoI TCCNGGA 1 cut(s) 3183
PleI GAGTC 6 cut(s) 109, 200, 997, 1132, 3168, 3220
PmaCI CACGTG 1 cut(s) 4136
PmlI CACGTG 1 cut(s) 4136
PpsI GAGTC 6 cut(s) 109, 200, 997, 1132, 3168, 3220
Ppu21I YACGTR 1 cut(s) 4136
PpuMI RGGWCCY 1 cut(s) 1585
PscI ACATGT 2 cut(s) 520, 4752
PshAI GACNNNNGTC 1 cut(s) 1583
PshBI ATTAAT 5 cut(s) 63, 819, 2846, 2967, 4092
PsiI TTATAA 1 cut(s) 4050
Psp1406I AACGTT 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 1585
Psp6I CCWGG 8 cut(s) 258, 442, 544, 798, 904, 2445, 3989, 4798
PspCI CACGTG 1 cut(s) 4136
PspEI GGTNACC 1 cut(s) 4469
PspFI CCCAGC 4 cut(s) 540, 667, 1055, 4160
PspGI CCWGG 8 cut(s) 258, 442, 544, 798, 904, 2445, 3989, 4798
PspLI CGTACG 1 cut(s) 1010
PspN4I GGNNCC 7 cut(s) 441, 538, 797, 1804, 2007, 2364, 4166
PspPI GGNCC 7 cut(s) 274, 796, 1585, 2990, 3507, 4693, 4820
PspPPI RGGWCCY 1 cut(s) 1585
PstI CTGCAG 2 cut(s) 1578, 2998
PvuII CAGCTG 2 cut(s) 2039, 4220
RseI CAYNNNNRTG 5 cut(s) 299, 626, 1828, 3407, 4134
Sau96I GGNCC 7 cut(s) 274, 796, 1585, 2990, 3507, 4693, 4820
ScaI AGTACT 1 cut(s) 1901
SchI GAGTC 6 cut(s) 110, 200, 998, 1133, 3169, 3221
ScrFI CCNGG 9 cut(s) 260, 444, 546, 800, 906, 2447, 3185, 3991, 4800
SfcI CTRYAG 3 cut(s) 1574, 2994, 3120
Sfr274I CTCGAG 1 cut(s) 1589
SinI GGWCC 4 cut(s) 274, 1585, 2990, 4820
SlaI CTCGAG 1 cut(s) 1589
SmiMI CAYNNNNRTG 5 cut(s) 299, 626, 1828, 3407, 4134
SmlI CTYRAG 2 cut(s) 252, 1589
SmoI CTYRAG 2 cut(s) 252, 1589
SpeI ACTAGT 1 cut(s) 1786
SphI GCATGC 2 cut(s) 416, 4876
SseBI AGGCCT 2 cut(s) 38, 193
SspI AATATT 2 cut(s) 2558, 3868
SspMI CTAG 8 cut(s) 702, 1220, 1787, 2079, 2294, 2949, 2975, 3810
StuI AGGCCT 2 cut(s) 38, 193
StyD4I CCNGG 9 cut(s) 258, 442, 544, 798, 904, 2445, 3183, 3989, 4798
StyI CCWWGG 2 cut(s) 3547, 4446
TatI WGTACW 8 cut(s) 111, 432, 639, 960, 1899, 1968, 2025, 2208
TauI GCSGC 6 cut(s) 8, 11, 139, 419, 1780, 2807
TscAI CASTG 8 cut(s) 771, 853, 1216, 2364, 2896, 3352, 3700, 4660
TseFI GTSAC 4 cut(s) 1137, 1782, 3520, 4469
Tsp45I GTSAC 4 cut(s) 1137, 1782, 3520, 4469
TspGWI ACGGA 5 cut(s) 2216, 2934, 3125, 4109, 4634
TspRI CASTG 8 cut(s) 771, 853, 1216, 2364, 2896, 3352, 3700, 4660
Van91I CCANNNNNTGG 3 cut(s) 3292, 4799, 4868
VneI GTGCAC 3 cut(s) 2453, 3768, 4058
VpaK11BI GGWCC 4 cut(s) 274, 1585, 2990, 4820
VspI ATTAAT 5 cut(s) 63, 819, 2846, 2967, 4092
XagI CCTNNNNNAGG 2 cut(s) 2372, 3467
XapI RAATTY 8 cut(s) 285, 1002, 1031, 2089, 2729, 3125, 3645, 3698
XbaI TCTAGA 1 cut(s) 2948
XceI RCATGY 7 cut(s) 416, 524, 1568, 1769, 4003, 4756, 4876
XcmI CCANNNNNNNNNTGG 2 cut(s) 1451, 3244
XhoI CTCGAG 1 cut(s) 1589
XmiI GTMKAC 1 cut(s) 684
XspI CTAG 8 cut(s) 702, 1220, 1787, 2079, 2294, 2949, 2975, 3810
ZrmI AGTACT 1 cut(s) 1901
Zsp2I ATGCAT 2 cut(s) 1931, 3364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.