Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016744

Physical Location & Seq

Genomic Coordinates Reverse (-)

6457021 .. 6460771

Gene Structure 3751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGAGTAATGATGGGAATATCATTGATGTTGAGTCGGGGGAAGAAGATGATTCTTCAACGCAAGATTGCAACATGGAGACAGAAGACAATGAAACCACCGAAGAAACATATGGAGCAGATGGCCCTTTTGAGTACAATGGGAAAAATTTTCGTGAGCTGACGGTCAAGGACTTTGATGGGACTTATTTCAAGACTATTGAAGATGCTGAAAAGTTCTATGAAATTTATTCTGCTGCACTTGGGTTCCGTTTAAGGAGACAAAAGTGTGATCGGGGCCTGTCTGGCACTGTCCTAAGAAGAGTGTGGGTGTGTTCCAAACAAGGTCAAAAGAACAAACCTAGAAACAATCAAGTAAGGGGGCTTTCGAGCAATAGTCGTCCGCCCAGGCACAGCACGAGAGAGAAATGTATGGCTGCATTTGTTGTGCGGTATTCCAAGGAACTTGATGCTTATTATGTGAAAAGTTTTACTACTGAGCACACCCATGACTTACCAAAGCCTAACAAGGTGCAATCGCTTCTGTCTCATTGTGTTGGCAAGAAAGTGGATTTGGCAGAGGCAGTTGCAATGCCCAAAGCCAAAGAGTCAATCAAAACCTCTGCTGTACATGAGCATCACCCATCAGGTGGAAATGAGTGTGTTGCTTCTACTAAAGAATTGGATTTGGCACACGCAGTTGCAGTACGCAAAGCCAAAGAGTCAATCAACACCTCTGCTGCATATGTGTATCGCCCGTCAGGTGGAAATGAGTTTGTGGGTTTAACTAAAGAATCAGATTTGGAGCAGGGAGTTGCAATGCGTAAAGGTTCAATCAACTCCACTGCTGCATCTCAGCACATGGTTGAACCAGCAGGTGGACATGCGTTTGTGAGTTTAACTAATAGATCGGATTTGGTGCAGACAGTGGCAATGCAGAAAGAGTCAATCACAACCTCTAGTGCATATGAGTATATAGTTCATCCTGCGGGTGGATATGAGTTTGTGGATTTAATGAAGAGGGAATTGTATAATAGCATTGACATAGAACGCCGAGAAGCTTTGTTGAATGGTGACGCACAAGTGGCAATTGCCTTCATGAATGCAAGGGCTGCAGAGGATCCCGAATTTTTTTGCAAGTTCAGCGTGGATGAGCGAGGCAGGCTTGGAAATTTGTTTTGGAGAGACTCTTGTTCATTGTTGGACTACACTAGGTTTGGGGATGTATTGATATTCGACTGTACATTCAAGACAAACATTTACCAGAGGCCGCTAGCTGTCTTTGTTGGTGCAAATAACCATCGGGGCACTGTATTGTTTGGATCTGCAATACTGGTTGATGATACCATTGATACCTACAAGTGGGCTTTGCAAACATTTTTGGGTGCGATGAAGGACAAAAAACCGATTTCTGTTTTGACTGACAGGGATGACAAAATACAAAATGCCGTTGTTGAAGTTTTTCCCAAGGCCAGACATCGTCTATGTTCGTGGCACATCGAGAAGAACTTGGCTACAATCATTAAGGACCCGGACGTGGTGAAAGCTTTCACTCAATTTTTATACAATGCTATACCACCGGATGAGTGGGACCTGGGCTGGAAGTCTATGGTAGAGACCTATGGGCTTCAAGACAATCCATGGATTAATATGATGTACCAGAGGCGCAAGAGATGGGCAGAGGCATTTTTTAAAGGTCATTTTTTTGGTGGAATGAGTAGCATGCAACGTTGCCAGGGGATCCATAGGAATCTGGAGAGTGCGCTAGGTAAGTATGACAGGTTTTGTGAATATATTCCCCGGATGGACAAGACCCTGAGGAAAATGAGAAATAATATTAGTGTGGATGACCTTAAATGCGAGAACTCAAAGCCAGTCATTATTACTCACATGCGGTCTTTGGAGCAGCAGATAGCTGAGATCTTCACTCATGACATCTACTTGCTGATAATGCACCAGATAGATTGGGAGAGAAAATACATAATCACCAAGTCTGAGCCATATGCACAAGGGGACGGTAAAGTGTTTCACCTGACCCAATATGACTTGCCACACAGGCATTGGACTGTTAATTACCACCATAATATAAGCAAAGTGTGGTTCTTGTGCTCATGCAAACTATTTCAGTCAGACGGAATCCCTTGTGCCCATATATTTTCAGTAATGAAAGCTGAGCTGATATTGAAGTTACCTGATTCCTTGGTTCTGAAGAGATGGACAATGGATGTGGGGAAGCCGGTGAACTTGCATAATTTGTCGGACAGGAATTTGCAAATGGTAAGGTATGCATCCTTGGCTTCAGAAATCAAAAATATCTGTTTCCCAGCATCTATGACTGAAGGAGGAACCAAGAAGATGAAATGTGAAATTGCAAAGCTGGCCAAGCCGGCCCATGATCGCACGGAGAGCCAAAACCACAGTTTATTGCAGAATTTGATACATCGTCACCAACTTCATGTTGGATCAGACGCCCACAGCTTTACCGGTTTTTCAGTTGGCATCAATGCCGAACATTACGCTCGCAGTCTTCCTCCGGGTGAATTCAGAACCTATTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

845

Amino Acids

96.34

Weight (kDa)

7.81

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	71 - 164	6.4e-14	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	372 - 484	1.9e-06	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	401 - 495	3.8e-24	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016744)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00731
rosa_chinensis	RchiOBHm_Chr6g0251121
rosa_laevigata	RLG00000015482
rosa_multiflora	Rmu_co7984096.1_g000001 Rmu_sc0002219.1_g000011 Rmu_sc0002219.1_g000018 Rmu_sc0011355.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217020
rosa_samantha	Rh6AG008800 Rh6AG009300 Rh6BG002500 Rh6CG006200 Rh6DG006500
rosa_wichuraiana	Rw6G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	842
Acc36I	ACCTGC	1 cut(s)	842
AccB7I	CCANNNNNTGG	2 cut(s)	626, 854
AciI	CCGC	5 cut(s)	380, 427, 965, 1247, 1870
AclI	AACGTT	1 cut(s)	1705
AclWI	GGATC	6 cut(s)	1091, 1104, 1306, 1711, 1724, 2446
AcoI	YGGCCR	1 cut(s)	2355
AcsI	RAATTY	7 cut(s)	145, 222, 1103, 1147, 2242, 2407, 2516
AcuI	CTGAAG	3 cut(s)	2204, 2259, 2334
AcyI	GRCGYC	1 cut(s)	2445
AfaI	GTAC	5 cut(s)	134, 606, 684, 1219, 1634
AfiI	CCNNNNNNNGG	6 cut(s)	626, 740, 854, 968, 1338, 1513
AgeI	ACCGGT	1 cut(s)	2459
AjiI	CACGTC	1 cut(s)	1513
AjnI	CCWGG	3 cut(s)	383, 1569, 1710
AjuI	GAANNNNNNNTTGG	4 cut(s)	533, 565, 1138, 1170
AluBI	AGCT	9 cut(s)	157, 1037, 1253, 1523, 1892, 2147, 2152, 2353, 2454
AluI	AGCT	9 cut(s)	157, 1037, 1253, 1523, 1892, 2147, 2152, 2353, 2454
Alw21I	GWGCWC	2 cut(s)	480, 2087
Alw26I	GTCTC	5 cut(s)	71, 250, 528, 1155, 1586
AlwI	GGATC	6 cut(s)	1091, 1104, 1306, 1711, 1724, 2446
AoxI	GGCC	6 cut(s)	121, 274, 1244, 1446, 2355, 2364
ApeKI	GCWGC	6 cut(s)	233, 413, 716, 824, 1088, 1882
ApoI	RAATTY	7 cut(s)	145, 222, 1103, 1147, 2242, 2407, 2516
AseI	ATTAAT	1 cut(s)	1623
AsiGI	ACCGGT	1 cut(s)	2459
Asp700I	GAANNNNTTC	3 cut(s)	1437, 1523, 1770
AspLEI	GCGC	2 cut(s)	1644, 1741
AspS9I	GGNCC	5 cut(s)	122, 274, 1504, 1567, 2365
AsuC2I	CCSGG	3 cut(s)	1508, 1777, 2511
AsuHPI	GGTGA	8 cut(s)	608, 1061, 1528, 1954, 1997, 2227, 2414, 2525
AsuNHI	GCTAGC	1 cut(s)	1249
AvaII	GGWCC	2 cut(s)	1504, 1567
AxyI	CCTNAGG	1 cut(s)	1793
BaeGI	GKGCMC	2 cut(s)	1286, 2125
BalI	TGGCCA	1 cut(s)	2357
BamHI	GGATCC	2 cut(s)	1096, 1716
BauI	CACGAG	1 cut(s)	394
BbsI	GAAGAC	2 cut(s)	90, 2495
Bbv12I	GWGCWC	2 cut(s)	480, 2087
BbvI	GCAGC	6 cut(s)	220, 400, 703, 811, 1075, 1894
BccI	CCATC	8 cut(s)	5, 113, 170, 628, 1284, 1644, 1774, 2184
BceAI	ACGGC	1 cut(s)	1409
BciT130I	CCWGG	3 cut(s)	385, 1571, 1712
BcnI	CCSGG	3 cut(s)	1508, 1777, 2511
BcoDI	GTCTC	5 cut(s)	71, 250, 528, 1155, 1586
BfaI	CTAG	5 cut(s)	339, 936, 1188, 1250, 1742
BfmI	CTRYAG	1 cut(s)	1089
BfuAI	ACCTGC	1 cut(s)	842
BglI	GCCNNNNNGGC	3 cut(s)	282, 2032, 2363
BglII	AGATCT	1 cut(s)	1896
BisI	GCNGC	7 cut(s)	234, 414, 717, 825, 1089, 1247, 1883
BlpI	GCTNAGC	1 cut(s)	2148
BlsI	GCNGC	7 cut(s)	235, 415, 718, 826, 1090, 1248, 1884
Bme1390I	CCNGG	6 cut(s)	385, 1508, 1571, 1712, 1777, 2511
Bme18I	GGWCC	2 cut(s)	1504, 1567
BmgBI	CACGTC	1 cut(s)	1513
BmgT120I	GGNCC	5 cut(s)	122, 274, 1504, 1567, 2365
BmiI	GGNNCC	7 cut(s)	245, 275, 1098, 1506, 1568, 1718, 2323
BmrFI	CCNGG	6 cut(s)	385, 1508, 1571, 1712, 1777, 2511
BmsI	GCATC	7 cut(s)	193, 436, 622, 836, 2273, 2312, 2484
BmtI	GCTAGC	1 cut(s)	1253
BpiI	GAAGAC	2 cut(s)	90, 2495
BpmI	CTGGAG	1 cut(s)	1751
Bpu1102I	GCTNAGC	1 cut(s)	2148
BpuMI	CCSGG	3 cut(s)	1508, 1777, 2511
BsaHI	GRCGYC	1 cut(s)	2445
BsaI	GGTCTC	1 cut(s)	1586
BsaJI	CCNNGG	9 cut(s)	383, 435, 1443, 1570, 1616, 1711, 1775, 2175, 2268
BsaWI	WCCGGW	2 cut(s)	1555, 2459
Bsc4I	CCNNNNNNNGG	6 cut(s)	626, 740, 854, 968, 1338, 1513
Bse118I	RCCGGY	3 cut(s)	2212, 2362, 2459
Bse1I	ACTGG	2 cut(s)	1314, 1850
Bse21I	CCTNAGG	1 cut(s)	1793
Bse3DI	GCAATG	3 cut(s)	573, 801, 915
BseBI	CCWGG	3 cut(s)	385, 1571, 1712
BseDI	CCNNGG	9 cut(s)	383, 435, 1443, 1570, 1616, 1711, 1775, 2175, 2268
BseGI	GGATG	9 cut(s)	958, 1132, 1204, 1411, 1564, 1785, 1828, 2206, 2264
BseLI	CCNNNNNNNGG	6 cut(s)	626, 740, 854, 968, 1338, 1513
BseMI	GCAATG	3 cut(s)	573, 801, 915
BseMII	CTCAG	6 cut(s)	465, 845, 1784, 1884, 1962, 2139
BseNI	ACTGG	2 cut(s)	1314, 1850
BseSI	GKGCMC	2 cut(s)	1286, 2125
BseXI	GCAGC	6 cut(s)	220, 400, 703, 811, 1075, 1894
BseYI	CCCAGC	1 cut(s)	2299
BsgI	GTGCAG	2 cut(s)	219, 917
BshFI	GGCC	6 cut(s)	123, 276, 1246, 1448, 2357, 2366
BshTI	ACCGGT	1 cut(s)	2459
BsiHKAI	GWGCWC	2 cut(s)	480, 2087
BsiSI	CCGG	7 cut(s)	1508, 1556, 1777, 2213, 2363, 2460, 2510
BslFI	GGGAC	3 cut(s)	193, 1580, 2003
BslI	CCNNNNNNNGG	6 cut(s)	626, 740, 854, 968, 1338, 1513
BsmAI	GTCTC	5 cut(s)	71, 250, 528, 1155, 1586
BsmFI	GGGAC	3 cut(s)	193, 1580, 2003
BsmI	GAATGC	1 cut(s)	1084
BsnI	GGCC	6 cut(s)	123, 276, 1246, 1448, 2357, 2366
Bso31I	GGTCTC	1 cut(s)	1586
Bsp1286I	GDGCHC	4 cut(s)	480, 1286, 2087, 2125
Bsp1407I	TGTACA	2 cut(s)	604, 1217
Bsp143I	GATC	8 cut(s)	268, 884, 1096, 1298, 1716, 1896, 2371, 2438
Bsp1720I	GCTNAGC	1 cut(s)	2148
Bsp19I	CCATGG	1 cut(s)	1616
BspACI	CCGC	5 cut(s)	380, 427, 965, 1247, 1870
BspANI	GGCC	6 cut(s)	123, 276, 1246, 1448, 2357, 2366
BspCNI	CTCAG	6 cut(s)	466, 844, 1785, 1885, 1963, 2140
BspHI	TCATGA	2 cut(s)	1074, 1906
BspLI	GGNNCC	7 cut(s)	245, 275, 1098, 1506, 1568, 1718, 2323
BspMAI	CTGCAG	1 cut(s)	1093
BspMI	ACCTGC	1 cut(s)	842
BspOI	GCTAGC	1 cut(s)	1253
BspPI	GGATC	6 cut(s)	1091, 1104, 1306, 1711, 1724, 2446
BspTNI	GGTCTC	1 cut(s)	1586
BsrDI	GCAATG	3 cut(s)	573, 801, 915
BsrFI	RCCGGY	3 cut(s)	2212, 2362, 2459
BsrGI	TGTACA	2 cut(s)	604, 1217
BsrI	ACTGG	2 cut(s)	1314, 1850
BssAI	RCCGGY	3 cut(s)	2212, 2362, 2459
BssECI	CCNNGG	9 cut(s)	383, 435, 1443, 1570, 1616, 1711, 1775, 2175, 2268
BssMI	GATC	8 cut(s)	268, 884, 1096, 1298, 1716, 1896, 2371, 2438
BssNI	GRCGYC	1 cut(s)	2445
BssSI	CACGAG	1 cut(s)	394
BssT1I	CCWWGG	5 cut(s)	435, 1443, 1616, 2175, 2268
Bst2BI	CACGAG	1 cut(s)	394
Bst2UI	CCWGG	3 cut(s)	385, 1571, 1712
Bst4CI	ACNGT	8 cut(s)	163, 289, 904, 1217, 1288, 1994, 2044, 2396
Bst6I	CTCTTC	3 cut(s)	292, 989, 2180
BstACI	GRCGYC	1 cut(s)	2445
BstAPI	GCANNNNNTGC	1 cut(s)	1088
BstAUI	TGTACA	2 cut(s)	604, 1217
BstC8I	GCNNGC	6 cut(s)	1139, 1251, 1700, 2355, 2364, 2497
BstDEI	CTNAG	7 cut(s)	293, 474, 831, 1793, 1893, 1971, 2148
BstDSI	CCRYGG	1 cut(s)	1616
BstF5I	GGATG	9 cut(s)	958, 1132, 1204, 1411, 1564, 1785, 1828, 2206, 2264
BstHHI	GCGC	2 cut(s)	1644, 1741
BstKTI	GATC	8 cut(s)	271, 887, 1099, 1301, 1719, 1899, 2374, 2441
BstMAI	GTCTC	5 cut(s)	71, 250, 528, 1155, 1586
BstMBI	GATC	8 cut(s)	268, 884, 1096, 1298, 1716, 1896, 2371, 2438
BstNI	CCWGG	3 cut(s)	385, 1571, 1712
BstNSI	RCATGY	3 cut(s)	863, 1702, 1870
BstSCI	CCNGG	6 cut(s)	383, 1506, 1569, 1710, 1775, 2509
BstSFI	CTRYAG	1 cut(s)	1089
BstSLI	GKGCMC	2 cut(s)	1286, 2125
BstV1I	GCAGC	6 cut(s)	220, 400, 703, 811, 1075, 1894
BstV2I	GAAGAC	2 cut(s)	90, 2495
BstX2I	RGATCY	4 cut(s)	1096, 1298, 1716, 1896
BstYI	RGATCY	4 cut(s)	1096, 1298, 1716, 1896
Bsu36I	CCTNAGG	1 cut(s)	1793
BsuRI	GGCC	6 cut(s)	123, 276, 1246, 1448, 2357, 2366
BtgI	CCRYGG	1 cut(s)	1616
BtgZI	GCGATG	1 cut(s)	1379
BtrI	CACGTC	1 cut(s)	1513
BtsCI	GGATG	9 cut(s)	958, 1132, 1204, 1411, 1564, 1785, 1828, 2206, 2264
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	4 cut(s)	285, 819, 909, 1284
BveI	ACCTGC	1 cut(s)	842
Cac8I	GCNNGC	6 cut(s)	1139, 1251, 1700, 2355, 2364, 2497
CciI	TCATGA	2 cut(s)	1074, 1906
CfoI	GCGC	2 cut(s)	1644, 1741
Cfr10I	RCCGGY	3 cut(s)	2212, 2362, 2459
Cfr13I	GGNCC	5 cut(s)	122, 274, 1504, 1567, 2365
CseI	GACGC	2 cut(s)	1061, 2453
Csp6I	GTAC	5 cut(s)	133, 605, 683, 1218, 1633
CspAI	ACCGGT	1 cut(s)	2459
CspCI	CAANNNNNGTGG	2 cut(s)	2184, 2219
CviQI	GTAC	5 cut(s)	133, 605, 683, 1218, 1633
DdeI	CTNAG	7 cut(s)	293, 474, 831, 1793, 1893, 1971, 2148
DpnI	GATC	8 cut(s)	270, 886, 1098, 1300, 1718, 1898, 2373, 2440
DpnII	GATC	8 cut(s)	268, 884, 1096, 1298, 1716, 1896, 2371, 2438
DraI	TTTAAA	1 cut(s)	1669
EaeI	YGGCCR	1 cut(s)	2355
Eam1104I	CTCTTC	3 cut(s)	292, 989, 2180
EarI	CTCTTC	3 cut(s)	292, 989, 2180
EciI	GGCGGA	1 cut(s)	369
Eco130I	CCWWGG	5 cut(s)	435, 1443, 1616, 2175, 2268
Eco31I	GGTCTC	1 cut(s)	1586
Eco47I	GGWCC	2 cut(s)	1504, 1567
Eco57I	CTGAAG	3 cut(s)	2204, 2259, 2334
Eco81I	CCTNAGG	1 cut(s)	1793
EcoO109I	RGGNCCY	3 cut(s)	274, 1504, 1567
EcoRI	GAATTC	1 cut(s)	2516
EcoRII	CCWGG	3 cut(s)	383, 1569, 1710
EcoT14I	CCWWGG	5 cut(s)	435, 1443, 1616, 2175, 2268
EcoT22I	ATGCAT	1 cut(s)	2266
ErhI	CCWWGG	5 cut(s)	435, 1443, 1616, 2175, 2268
FaqI	GGGAC	3 cut(s)	193, 1580, 2003
FauI	CCCGC	1 cut(s)	958
FauNDI	CATATG	4 cut(s)	109, 721, 943, 1978
Fnu4HI	GCNGC	7 cut(s)	234, 414, 717, 825, 1089, 1247, 1883
FokI	GGATG	9 cut(s)	945, 1139, 1211, 1418, 1571, 1792, 1835, 2213, 2251
Fsp4HI	GCNGC	7 cut(s)	234, 414, 717, 825, 1089, 1247, 1883
FspBI	CTAG	5 cut(s)	339, 936, 1188, 1250, 1742
GlaI	GCGC	2 cut(s)	1643, 1740
GluI	GCNGC	7 cut(s)	234, 414, 717, 825, 1089, 1247, 1883
GsaI	CCCAGC	1 cut(s)	2303
GsuI	CTGGAG	1 cut(s)	1751
HaeIII	GGCC	6 cut(s)	123, 276, 1246, 1448, 2357, 2366
HapII	CCGG	7 cut(s)	1508, 1556, 1777, 2213, 2363, 2460, 2510
HgaI	GACGC	2 cut(s)	1061, 2453
HhaI	GCGC	2 cut(s)	1644, 1741
Hin1I	GRCGYC	1 cut(s)	2445
Hin6I	GCGC	2 cut(s)	1642, 1739
HinP1I	GCGC	2 cut(s)	1642, 1739
HindIII	AAGCTT	2 cut(s)	1035, 1521
HpaII	CCGG	7 cut(s)	1508, 1556, 1777, 2213, 2363, 2460, 2510
HphI	GGTGA	8 cut(s)	608, 1061, 1528, 1954, 1997, 2227, 2414, 2525
Hpy166II	GTNNAC	2 cut(s)	857, 2218
Hpy188I	TCNGA	9 cut(s)	775, 889, 1972, 2107, 2184, 2236, 2278, 2443, 2522
Hpy188III	TCNNGA	9 cut(s)	152, 190, 1075, 1100, 1225, 1477, 1607, 1730, 1907
Hpy8I	GTNNAC	2 cut(s)	857, 2218
HpyAV	CCTTC	3 cut(s)	1081, 1363, 2309
HpyCH4III	ACNGT	8 cut(s)	163, 289, 904, 1217, 1288, 1994, 2044, 2396
HpyCH4IV	ACGT	2 cut(s)	1512, 1705
HpyF3I	CTNAG	7 cut(s)	293, 474, 831, 1793, 1893, 1971, 2148
HpySE526I	ACGT	2 cut(s)	1512, 1705
Hsp92I	GRCGYC	1 cut(s)	2445
HspAI	GCGC	2 cut(s)	1642, 1739
KroI	GCCGGC	1 cut(s)	2362
KroNI	GCCGGC	1 cut(s)	2364
Kzo9I	GATC	8 cut(s)	268, 884, 1096, 1298, 1716, 1896, 2371, 2438
LmnI	GCTCC	3 cut(s)	113, 781, 1879
Lsp1109I	GCAGC	6 cut(s)	220, 400, 703, 811, 1075, 1894
LweI	GCATC	7 cut(s)	193, 436, 622, 836, 2273, 2312, 2484
MaeI	CTAG	5 cut(s)	339, 936, 1188, 1250, 1742
MaeII	ACGT	2 cut(s)	1512, 1705
MaeIII	GTNAC	3 cut(s)	1049, 2163, 2420
MalI	GATC	8 cut(s)	270, 886, 1098, 1300, 1718, 1898, 2373, 2440
MboI	GATC	8 cut(s)	268, 884, 1096, 1298, 1716, 1896, 2371, 2438
MfeI	CAATTG	1 cut(s)	1065
MflI	RGATCY	4 cut(s)	1096, 1298, 1716, 1896
MhlI	GDGCHC	4 cut(s)	480, 1286, 2087, 2125
MlsI	TGGCCA	1 cut(s)	2357
MluNI	TGGCCA	1 cut(s)	2357
MlyI	GAGTC	5 cut(s)	41, 593, 707, 929, 1157
MmeI	TCCRAC	3 cut(s)	1158, 2214, 2416
Mox20I	TGGCCA	1 cut(s)	2357
Mph1103I	ATGCAT	1 cut(s)	2266
MroNI	GCCGGC	1 cut(s)	2362
MroXI	GAANNNNTTC	3 cut(s)	1437, 1523, 1770
MscI	TGGCCA	1 cut(s)	2357
MseI	TTAA	9 cut(s)	251, 761, 875, 989, 1500, 1623, 1668, 1830, 2046
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	2357
MspI	CCGG	7 cut(s)	1508, 1556, 1777, 2213, 2363, 2460, 2510
MspR9I	CCNGG	6 cut(s)	385, 1508, 1571, 1712, 1777, 2511
MunI	CAATTG	1 cut(s)	1065
Mva1269I	GAATGC	1 cut(s)	1084
MvaI	CCWGG	3 cut(s)	385, 1571, 1712
NaeI	GCCGGC	1 cut(s)	2364
NciI	CCSGG	3 cut(s)	1508, 1777, 2511
NcoI	CCATGG	1 cut(s)	1616
NdeI	CATATG	4 cut(s)	109, 721, 943, 1978
NdeII	GATC	8 cut(s)	268, 884, 1096, 1298, 1716, 1896, 2371, 2438
NgoMIV	GCCGGC	1 cut(s)	2362
NheI	GCTAGC	1 cut(s)	1249
NlaIV	GGNNCC	7 cut(s)	245, 275, 1098, 1506, 1568, 1718, 2323
NmeAIII	GCCGAG	1 cut(s)	1055
NmuCI	GTSAC	2 cut(s)	1049, 2420
NsiI	ATGCAT	1 cut(s)	2266
NspI	RCATGY	3 cut(s)	863, 1702, 1870
PaeI	GCATGC	1 cut(s)	1702
PagI	TCATGA	2 cut(s)	1074, 1906
PaqCI	CACCTGC	1 cut(s)	842
PctI	GAATGC	1 cut(s)	1084
PdiI	GCCGGC	1 cut(s)	2364
PdmI	GAANNNNTTC	3 cut(s)	1437, 1523, 1770
PfeI	GAWTC	5 cut(s)	50, 770, 1726, 2112, 2171
PflFI	GACNNNGTC	1 cut(s)	1455
PflMI	CCANNNNNTGG	2 cut(s)	626, 854
PinAI	ACCGGT	1 cut(s)	2459
PkrI	GCNGC	7 cut(s)	235, 415, 718, 826, 1090, 1248, 1884
PleI	GAGTC	5 cut(s)	40, 592, 706, 928, 1157
PpsI	GAGTC	5 cut(s)	40, 592, 706, 928, 1157
PpuMI	RGGWCCY	2 cut(s)	1504, 1567
PshBI	ATTAAT	1 cut(s)	1623
Psp1406I	AACGTT	1 cut(s)	1705
Psp5II	RGGWCCY	2 cut(s)	1504, 1567
Psp6I	CCWGG	3 cut(s)	383, 1569, 1710
PspFI	CCCAGC	1 cut(s)	2299
PspGI	CCWGG	3 cut(s)	383, 1569, 1710
PspN4I	GGNNCC	7 cut(s)	245, 275, 1098, 1506, 1568, 1718, 2323
PspPI	GGNCC	5 cut(s)	122, 274, 1504, 1567, 2365
PspPPI	RGGWCCY	2 cut(s)	1504, 1567
PstI	CTGCAG	1 cut(s)	1093
PsuI	RGATCY	4 cut(s)	1096, 1298, 1716, 1896
PsyI	GACNNNGTC	1 cut(s)	1455
RsaI	GTAC	5 cut(s)	134, 606, 684, 1219, 1634
RsaNI	GTAC	5 cut(s)	133, 605, 683, 1218, 1633
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	9 cut(s)	251, 761, 875, 989, 1500, 1623, 1668, 1830, 2046
SatI	GCNGC	7 cut(s)	234, 414, 717, 825, 1089, 1247, 1883
Sau3AI	GATC	8 cut(s)	268, 884, 1096, 1298, 1716, 1896, 2371, 2438
Sau96I	GGNCC	5 cut(s)	122, 274, 1504, 1567, 2365
SchI	GAGTC	5 cut(s)	41, 593, 707, 929, 1157
ScrFI	CCNGG	6 cut(s)	385, 1508, 1571, 1712, 1777, 2511
SduI	GDGCHC	4 cut(s)	480, 1286, 2087, 2125
SfaNI	GCATC	7 cut(s)	193, 436, 622, 836, 2273, 2312, 2484
SfcI	CTRYAG	1 cut(s)	1089
SfiI	GGCCNNNNNGGCC	1 cut(s)	2363
SinI	GGWCC	2 cut(s)	1504, 1567
SmiMI	CAYNNNNRTG	1 cut(s)	483
SphI	GCATGC	1 cut(s)	1702
SsiI	CCGC	5 cut(s)	380, 427, 965, 1247, 1870
SspI	AATATT	1 cut(s)	1813
SspMI	CTAG	5 cut(s)	339, 936, 1188, 1250, 1742
StyD4I	CCNGG	6 cut(s)	383, 1506, 1569, 1710, 1775, 2509
StyI	CCWWGG	5 cut(s)	435, 1443, 1616, 2175, 2268
TaaI	ACNGT	8 cut(s)	163, 289, 904, 1217, 1288, 1994, 2044, 2396
TaiI	ACGT	2 cut(s)	1515, 1708
TaqI	TCGA	3 cut(s)	365, 1212, 1476
TatI	WGTACW	3 cut(s)	132, 604, 1217
TauI	GCSGC	1 cut(s)	1249
TfiI	GAWTC	5 cut(s)	50, 770, 1726, 2112, 2171
Tru1I	TTAA	9 cut(s)	251, 761, 875, 989, 1500, 1623, 1668, 1830, 2046
Tru9I	TTAA	9 cut(s)	251, 761, 875, 989, 1500, 1623, 1668, 1830, 2046
TscAI	CASTG	4 cut(s)	292, 826, 909, 1291
TseFI	GTSAC	2 cut(s)	1049, 2420
TseI	GCWGC	6 cut(s)	233, 413, 716, 824, 1088, 1882
Tsp45I	GTSAC	2 cut(s)	1049, 2420
TspGWI	ACGGA	3 cut(s)	236, 2124, 2393
TspRI	CASTG	4 cut(s)	292, 826, 909, 1291
Tth111I	GACNNNGTC	1 cut(s)	1455
Van91I	CCANNNNNTGG	2 cut(s)	626, 854
VpaK11BI	GGWCC	2 cut(s)	1504, 1567
VspI	ATTAAT	1 cut(s)	1623
XapI	RAATTY	7 cut(s)	145, 222, 1103, 1147, 2242, 2407, 2516
XceI	RCATGY	3 cut(s)	863, 1702, 1870
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1560, 2034, 2432
XmnI	GAANNNNTTC	3 cut(s)	1437, 1523, 1770
XspI	CTAG	5 cut(s)	339, 936, 1188, 1250, 1742
Zsp2I	ATGCAT	1 cut(s)	2266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.