Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0016744

Physical Location & Seq

Genomic Coordinates Reverse (-)

44056 .. 44454

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002219.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgaaagctgagctgatattgaagttacctgattccttggttctgaagcgatggacaatggatgtggggaagccagtgaacttgcataatttgtcggacaggaatttgcaaatggtaaggtatgcatccttggcttcagaaattaaaagtatctgtttcccagcatctatgactgaaggaggaaccaagaagatgaaatgtgaaattgcaaagctggccaagccggcccatgatcgcacggagagccaaaaccacagtttattgcagaatttgatacatcgtcaccaacttcatgttggatcagatgcccacagctttaccggtttttcagttggcatcaatgccgaacattacgctcgcagtcttcctccgggtgaattcagaacctatttctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

132

Amino Acids

14.92

Weight (kDa)

9.36

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016744)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00731
rosa_chinensis	RchiOBHm_Chr6g0251121
rosa_laevigata	RLG00000015482
rosa_multiflora	Rmu_co7984096.1_g000001 Rmu_sc0002219.1_g000011 Rmu_sc0002219.1_g000018 Rmu_sc0011355.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217020
rosa_samantha	Rh6AG008800 Rh6AG009300 Rh6BG002500 Rh6CG006200 Rh6DG006500
rosa_wichuraiana	Rw6G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	3 cut(s)	103, 268, 377
AcuI	CTGAAG	3 cut(s)	65, 120, 195
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	4 cut(s)	8, 13, 214, 315
AluI	AGCT	4 cut(s)	8, 13, 214, 315
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	2 cut(s)	216, 225
ApoI	RAATTY	3 cut(s)	103, 268, 377
AsiGI	ACCGGT	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	275, 386
BalI	TGGCCA	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	356
BccI	CCATC	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	372
BglI	GCCNNNNNGGC	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	4 cut(s)	134, 173, 295, 345
BpiI	GAAGAC	1 cut(s)	356
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	36, 129
BsaWI	WCCGGW	1 cut(s)	320
Bse118I	RCCGGY	2 cut(s)	223, 320
Bse1I	ACTGG	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	36, 129
BseGI	GGATG	2 cut(s)	67, 125
BseNI	ACTGG	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	218, 227
BshTI	ACCGGT	1 cut(s)	320
BsiSI	CCGG	3 cut(s)	224, 321, 371
BsnI	GGCC	2 cut(s)	218, 227
Bsp143I	GATC	2 cut(s)	232, 299
Bsp1720I	GCTNAGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	218, 227
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	307
BsrFI	RCCGGY	2 cut(s)	223, 320
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	2 cut(s)	223, 320
BssECI	CCNNGG	2 cut(s)	36, 129
BssMI	GATC	2 cut(s)	232, 299
BssT1I	CCWWGG	2 cut(s)	36, 129
Bst4CI	ACNGT	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	216, 225, 358
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	67, 125
BstKTI	GATC	2 cut(s)	235, 302
BstMBI	GATC	2 cut(s)	232, 299
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 215, 220, 224, 243
BstSCI	CCNGG	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	218, 227
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	67, 125
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	3 cut(s)	216, 225, 358
Cfr10I	RCCGGY	2 cut(s)	223, 320
Cfr13I	GGNCC	1 cut(s)	226
CspAI	ACCGGT	1 cut(s)	320
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	2 cut(s)	230, 293
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	2 cut(s)	234, 301
DpnII	GATC	2 cut(s)	232, 299
EaeI	YGGCCR	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	36, 129
Eco57I	CTGAAG	3 cut(s)	65, 120, 195
EcoRI	GAATTC	1 cut(s)	377
EcoT14I	CCWWGG	2 cut(s)	36, 129
EcoT22I	ATGCAT	1 cut(s)	127
ErhI	CCWWGG	2 cut(s)	36, 129
FaeI	CATG	2 cut(s)	233, 296
FaiI	YATR	5 cut(s)	87, 123, 170, 231, 294
FatI	CATG	2 cut(s)	229, 292
FokI	GGATG	2 cut(s)	74, 112
GsaI	CCCAGC	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	218, 227
HapII	CCGG	3 cut(s)	224, 321, 371
Hin1II	CATG	2 cut(s)	233, 296
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	3 cut(s)	224, 321, 371
HphI	GGTGA	2 cut(s)	275, 386
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	5 cut(s)	45, 97, 139, 304, 383
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	5 cut(s)	85, 109, 125, 209, 265
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 215, 220, 224, 243
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	233, 296
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	232, 299
LpnPI	CCDG	8 cut(s)	42, 85, 87, 174, 200, 237, 334, 384
LweI	GCATC	4 cut(s)	134, 173, 295, 345
MaeIII	GTNAC	2 cut(s)	24, 281
MalI	GATC	2 cut(s)	234, 301
MboI	GATC	2 cut(s)	232, 299
MboII	GAAGA	2 cut(s)	202, 356
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	6 cut(s)	88, 103, 141, 204, 268, 377
MluNI	TGGCCA	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	75, 277
MnlI	CCTC	2 cut(s)	173, 378
Mox20I	TGGCCA	1 cut(s)	218
Mph1103I	ATGCAT	1 cut(s)	127
MroNI	GCCGGC	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	3 cut(s)	224, 321, 371
MspR9I	CCNGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	5 cut(s)	131, 215, 220, 224, 243
NaeI	GCCGGC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	2 cut(s)	232, 299
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	233, 296
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	127
PdiI	GCCGGC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	232, 299
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	7 cut(s)	10, 15, 31, 122, 216, 317, 389
SfaNI	GCATC	4 cut(s)	134, 173, 295, 345
SfiI	GGCCNNNNNGGCC	1 cut(s)	224
Sse9I	AATT	6 cut(s)	88, 103, 141, 204, 268, 377
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	2 cut(s)	36, 129
TaaI	ACNGT	1 cut(s)	257
TasI	AATT	6 cut(s)	88, 103, 141, 204, 268, 377
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	17, 209, 281
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	3 cut(s)	103, 268, 377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.