Rmu_co7984096.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7984096.1
OG0016744
Physical Location & Seq
Reverse (-)
142 .. 483
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7984096.1_g000001.1.cds

Sequence Viewer

Length: 342 bp
atggatgtggggaagccagtgaacttgcataatttgtcggacaggaatttgcaaatggtaaggtatgcatccttggcttcagaaattaaaagtatctgtttcccagcatctatgactgaaggaggaaccaagaagatgaaatgtgaaattgcaaagctggccaagccggcccatgatcgcacggagagccaaaaccacagtttattgcagaatttgatacatcgtcaccaacttcatgttggatcagatgcccacagctttaccggtttttcagttggcatcaatgccgaacattacgctcgcagtcttcctccgggtgaattcagaacctatttctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.68

Weight (kDa)

9.0

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 3 cut(s) 46, 211, 320
AcuI CTGAAG 2 cut(s) 63, 138
AgeI ACCGGT 1 cut(s) 263
AluBI AGCT 2 cut(s) 157, 258
AluI AGCT 2 cut(s) 157, 258
AlwI GGATC 1 cut(s) 250
AoxI GGCC 2 cut(s) 159, 168
ApoI RAATTY 3 cut(s) 46, 211, 320
AsiGI ACCGGT 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 218, 329
BalI TGGCCA 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 299
BcnI CCSGG 1 cut(s) 315
BglI GCCNNNNNGGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 4 cut(s) 77, 116, 238, 288
BpiI GAAGAC 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 263
Bse118I RCCGGY 2 cut(s) 166, 263
Bse1I ACTGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 10, 68
BseNI ACTGG 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 2 cut(s) 161, 170
BshTI ACCGGT 1 cut(s) 263
BsiSI CCGG 3 cut(s) 167, 264, 314
BsnI GGCC 2 cut(s) 161, 170
Bsp143I GATC 2 cut(s) 175, 242
BspANI GGCC 2 cut(s) 161, 170
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 250
BsrFI RCCGGY 2 cut(s) 166, 263
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 2 cut(s) 166, 263
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 175, 242
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 200
BstC8I GCNNGC 3 cut(s) 159, 168, 301
BstF5I GGATG 2 cut(s) 10, 68
BstKTI GATC 2 cut(s) 178, 245
BstMBI GATC 2 cut(s) 175, 242
BstMWI GCNNNNNNNGC 5 cut(s) 74, 158, 163, 167, 186
BstSCI CCNGG 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 299
BsuRI GGCC 2 cut(s) 161, 170
BtsCI GGATG 2 cut(s) 10, 68
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 3 cut(s) 159, 168, 301
Cfr10I RCCGGY 2 cut(s) 166, 263
Cfr13I GGNCC 1 cut(s) 169
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 2 cut(s) 173, 236
CviJI RGCY 8 cut(s) 16, 77, 157, 161, 166, 170, 189, 258
CviKI_1 RGCY 8 cut(s) 16, 77, 157, 161, 166, 170, 189, 258
DpnI GATC 2 cut(s) 177, 244
DpnII GATC 2 cut(s) 175, 242
EaeI YGGCCR 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 72
Eco57I CTGAAG 2 cut(s) 63, 138
EcoRI GAATTC 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 176, 239
FaiI YATR 5 cut(s) 30, 66, 113, 174, 237
FatI CATG 2 cut(s) 172, 235
FokI GGATG 2 cut(s) 17, 55
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 2 cut(s) 161, 170
HapII CCGG 3 cut(s) 167, 264, 314
Hin1II CATG 2 cut(s) 176, 239
HpaII CCGG 3 cut(s) 167, 264, 314
HphI GGTGA 2 cut(s) 218, 329
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 40, 82, 247, 326
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 5 cut(s) 28, 52, 68, 152, 208
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 158, 163, 167, 186
Hsp92II CATG 2 cut(s) 176, 239
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
Kzo9I GATC 2 cut(s) 175, 242
LpnPI CCDG 7 cut(s) 28, 30, 117, 143, 180, 277, 327
LweI GCATC 4 cut(s) 77, 116, 238, 288
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 177, 244
MboI GATC 2 cut(s) 175, 242
MboII GAAGA 2 cut(s) 145, 299
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 6 cut(s) 31, 46, 84, 147, 211, 320
MluNI TGGCCA 1 cut(s) 161
MmeI TCCRAC 2 cut(s) 18, 220
MnlI CCTC 2 cut(s) 116, 321
Mox20I TGGCCA 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 70
MroNI GCCGGC 1 cut(s) 166
MscI TGGCCA 1 cut(s) 161
MseI TTAA 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 161
MspI CCGG 3 cut(s) 167, 264, 314
MspR9I CCNGG 1 cut(s) 315
MwoI GCNNNNNNNGC 5 cut(s) 74, 158, 163, 167, 186
NaeI GCCGGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 315
NdeII GATC 2 cut(s) 175, 242
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 2 cut(s) 176, 239
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 70
PdiI GCCGGC 1 cut(s) 168
PinAI ACCGGT 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 2 cut(s) 175, 242
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 315
SetI ASST 4 cut(s) 65, 159, 260, 332
SfaNI GCATC 4 cut(s) 77, 116, 238, 288
SfiI GGCCNNNNNGGCC 1 cut(s) 167
Sse9I AATT 6 cut(s) 31, 46, 84, 147, 211, 320
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 200
TasI AATT 6 cut(s) 31, 46, 84, 147, 211, 320
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 152, 224
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 1 cut(s) 24
XapI RAATTY 3 cut(s) 46, 211, 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.