Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0016744

Physical Location & Seq

Genomic Coordinates Reverse (-)

59387 .. 60559

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002219.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgaaggacaaaaaaccgatttctgttctgactgacggggatgacaaaatacaaaatgccgttgttgaagtttttcccaaggccagacatcgtctatgttcgtggcacatcgagaagaacttggctacaatcattaaggacctggacgtggtgaaagctttcactcaatttttatacaatgctataccaccggatgagtgggacctgggctggaagtctatggtagagacctatgggcttcaagacaatccatggattaatatgatgtaccacaggcgcaagagatgggcagaggcattttttaaaggccatttttttggtggaatgagtagcatgcaacgttgccaggggatccataggaatctggagggcgcgctaggtaagtatgacaggttttgtgaatatattccccgaatggacaagaccctgaggaaaatgagaaataatattagcgtggatgaccttaaatgcgagaactcaaagccagtcattattactcacatgcggtctttggagcagcagatagctgagatcttcactcatgacacctacttgctgataatgcaccagatagattgggagagaaaatacataatcaccaagtctgagccatatgcacaaggggacggtaaagtgtttcacctgacccagtatgacttgccacacaggcattggactgttaattaccaccatagtataagcaaagtgtggttcttgtgctcatgcaaactatttcagtcagacggaatcccttgtgcccatatattttcagtaatgaaagctgagctgatattgaagttacctgattccttggttctgaagcgatggacaatggatgtggggaagccagtgaacttgcataatttgtcggacaggaatttgcaaatggtaaggtatgcatccttggcttcagaaattaaaagtatctgtttcccagcatctatgactgaaggaggaaccaagaagatgaaatgtgaaattgcaaagctggccaagccggcccatgatcgcacggagagccaaaaccacagtttattgcagaatttgatacatcgtcaccaacttcatgttggatcagatgcccacagctttaccggtttttcagttggcatcaatgccgaacattacgctcgcagtcttcctccgggtgaattcagaacctatttctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

390

Amino Acids

45.43

Weight (kDa)

9.03

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016744)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00731
rosa_chinensis	RchiOBHm_Chr6g0251121
rosa_laevigata	RLG00000015482
rosa_multiflora	Rmu_co7984096.1_g000001 Rmu_sc0002219.1_g000011 Rmu_sc0002219.1_g000018 Rmu_sc0011355.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217020
rosa_samantha	Rh6AG008800 Rh6AG009300 Rh6BG002500 Rh6CG006200 Rh6DG006500
rosa_wichuraiana	Rw6G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	374
AciI	CCGC	1 cut(s)	505
AclI	AACGTT	1 cut(s)	340
AclWI	GGATC	3 cut(s)	346, 359, 1081
AcoI	YGGCCR	1 cut(s)	990
AcsI	RAATTY	3 cut(s)	877, 1042, 1151
AcuI	CTGAAG	3 cut(s)	839, 894, 969
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	1094
AgsI	TTSAA	3 cut(s)	68, 242, 796
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	3 cut(s)	141, 204, 345
AluBI	AGCT	6 cut(s)	158, 527, 782, 787, 988, 1089
AluI	AGCT	6 cut(s)	158, 527, 782, 787, 988, 1089
Alw21I	GWGCWC	1 cut(s)	722
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	346, 359, 1081
AoxI	GGCC	4 cut(s)	81, 307, 990, 999
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	3 cut(s)	877, 1042, 1151
AseI	ATTAAT	1 cut(s)	258
AsiGI	ACCGGT	1 cut(s)	1094
Asp700I	GAANNNNTTC	3 cut(s)	72, 158, 405
AspLEI	GCGC	3 cut(s)	279, 374, 376
AspS9I	GGNCC	3 cut(s)	139, 202, 1000
AsuC2I	CCSGG	1 cut(s)	1146
AsuHPI	GGTGA	5 cut(s)	163, 589, 632, 1049, 1160
AvaII	GGWCC	2 cut(s)	139, 202
AxyI	CCTNAGG	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	760
BalI	TGGCCA	1 cut(s)	992
BamHI	GGATCC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	1130
Bbv12I	GWGCWC	1 cut(s)	722
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	2 cut(s)	279, 819
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	143, 206, 347
BcnI	CCSGG	1 cut(s)	1146
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	377
BglI	GCCNNNNNGGC	2 cut(s)	667, 998
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	1 cut(s)	518
BlpI	GCTNAGC	1 cut(s)	783
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	4 cut(s)	143, 206, 347, 1146
Bme18I	GGWCC	2 cut(s)	139, 202
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	139, 202, 1000
BmiI	GGNNCC	3 cut(s)	203, 353, 958
BmrFI	CCNGG	4 cut(s)	143, 206, 347, 1146
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	4 cut(s)	908, 947, 1069, 1119
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	1130
BpmI	CTGGAG	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	783
BpuMI	CCSGG	1 cut(s)	1146
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	6 cut(s)	78, 205, 251, 346, 810, 903
BsaWI	WCCGGW	2 cut(s)	190, 1094
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	2 cut(s)	997, 1094
Bse1I	ACTGG	3 cut(s)	485, 649, 848
Bse21I	CCTNAGG	1 cut(s)	428
BseBI	CCWGG	3 cut(s)	143, 206, 347
BseDI	CCNNGG	6 cut(s)	78, 205, 251, 346, 810, 903
BseGI	GGATG	5 cut(s)	46, 199, 463, 841, 899
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	4 cut(s)	419, 519, 597, 774
BseNI	ACTGG	3 cut(s)	485, 649, 848
BsePI	GCGCGC	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	1 cut(s)	529
BseYI	CCCAGC	1 cut(s)	934
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	83, 309, 992, 1001
BshTI	ACCGGT	1 cut(s)	1094
BsiHKAI	GWGCWC	1 cut(s)	722
BsiSI	CCGG	4 cut(s)	191, 998, 1095, 1145
BslFI	GGGAC	2 cut(s)	215, 638
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	215, 638
BsnI	GGCC	4 cut(s)	83, 309, 992, 1001
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	722, 760
Bsp143I	GATC	4 cut(s)	351, 531, 1006, 1073
Bsp1720I	GCTNAGC	1 cut(s)	783
Bsp19I	CCATGG	1 cut(s)	251
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	4 cut(s)	83, 309, 992, 1001
BspCNI	CTCAG	4 cut(s)	420, 520, 598, 775
BspFNI	CGCG	1 cut(s)	374
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	203, 353, 958
BspPI	GGATC	3 cut(s)	346, 359, 1081
BspTNI	GGTCTC	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	997, 1094
BsrI	ACTGG	3 cut(s)	485, 649, 848
BssAI	RCCGGY	2 cut(s)	997, 1094
BssECI	CCNNGG	6 cut(s)	78, 205, 251, 346, 810, 903
BssHII	GCGCGC	1 cut(s)	372
BssMI	GATC	4 cut(s)	351, 531, 1006, 1073
BssT1I	CCWWGG	4 cut(s)	78, 251, 810, 903
Bst2UI	CCWGG	3 cut(s)	143, 206, 347
Bst4CI	ACNGT	3 cut(s)	629, 679, 1031
BstC8I	GCNNGC	5 cut(s)	335, 374, 990, 999, 1132
BstDEI	CTNAG	4 cut(s)	428, 528, 606, 783
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	5 cut(s)	46, 199, 463, 841, 899
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	3 cut(s)	279, 374, 376
BstKTI	GATC	4 cut(s)	354, 534, 1009, 1076
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	351, 531, 1006, 1073
BstMWI	GCNNNNNNNGC	7 cut(s)	562, 667, 905, 989, 994, 998, 1017
BstNI	CCWGG	3 cut(s)	143, 206, 347
BstNSI	RCATGY	2 cut(s)	337, 505
BstSCI	CCNGG	4 cut(s)	141, 204, 345, 1144
BstSLI	GKGCMC	1 cut(s)	760
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	1 cut(s)	1130
BstX2I	RGATCY	2 cut(s)	351, 531
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	2 cut(s)	351, 531
Bsu36I	CCTNAGG	1 cut(s)	428
BsuRI	GGCC	4 cut(s)	83, 309, 992, 1001
BtgI	CCRYGG	1 cut(s)	251
BtgZI	GCGATG	1 cut(s)	838
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	5 cut(s)	46, 199, 463, 841, 899
BtsIMutI	CAGTG	1 cut(s)	855
Cac8I	GCNNGC	5 cut(s)	335, 374, 990, 999, 1132
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	3 cut(s)	279, 374, 376
Cfr10I	RCCGGY	2 cut(s)	997, 1094
Cfr13I	GGNCC	3 cut(s)	139, 202, 1000
Csp6I	GTAC	1 cut(s)	268
CspAI	ACCGGT	1 cut(s)	1094
CspCI	CAANNNNNGTGG	2 cut(s)	819, 854
CviAII	CATG	7 cut(s)	252, 334, 502, 542, 723, 1004, 1067
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	4 cut(s)	428, 528, 606, 783
DpnI	GATC	4 cut(s)	353, 533, 1008, 1075
DpnII	GATC	4 cut(s)	351, 531, 1006, 1073
DraI	TTTAAA	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	990
Eco130I	CCWWGG	4 cut(s)	78, 251, 810, 903
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	2 cut(s)	139, 202
Eco57I	CTGAAG	3 cut(s)	839, 894, 969
Eco81I	CCTNAGG	1 cut(s)	428
EcoO109I	RGGNCCY	2 cut(s)	139, 202
EcoRI	GAATTC	1 cut(s)	1151
EcoRII	CCWGG	3 cut(s)	141, 204, 345
EcoT14I	CCWWGG	4 cut(s)	78, 251, 810, 903
EcoT22I	ATGCAT	1 cut(s)	901
ErhI	CCWWGG	4 cut(s)	78, 251, 810, 903
FaeI	CATG	7 cut(s)	255, 337, 505, 545, 726, 1007, 1070
FaqI	GGGAC	2 cut(s)	215, 638
FatI	CATG	7 cut(s)	251, 333, 501, 541, 722, 1003, 1066
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	518
FokI	GGATG	5 cut(s)	53, 206, 470, 848, 886
Fsp4HI	GCNGC	1 cut(s)	518
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	3 cut(s)	278, 373, 375
GluI	GCNGC	1 cut(s)	518
GsaI	CCCAGC	1 cut(s)	938
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	4 cut(s)	83, 309, 992, 1001
HapII	CCGG	4 cut(s)	191, 998, 1095, 1145
HhaI	GCGC	3 cut(s)	279, 374, 376
Hin1II	CATG	7 cut(s)	255, 337, 505, 545, 726, 1007, 1070
Hin6I	GCGC	3 cut(s)	277, 372, 374
HinP1I	GCGC	3 cut(s)	277, 372, 374
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	3 cut(s)	361, 747, 806
HpaII	CCGG	4 cut(s)	191, 998, 1095, 1145
HphI	GGTGA	5 cut(s)	163, 589, 632, 1049, 1160
Hpy166II	GTNNAC	1 cut(s)	853
Hpy188I	TCNGA	8 cut(s)	30, 607, 742, 819, 871, 913, 1078, 1157
Hpy188III	TCNNGA	4 cut(s)	112, 242, 365, 542
Hpy8I	GTNNAC	1 cut(s)	853
HpyAV	CCTTC	1 cut(s)	944
HpyCH4III	ACNGT	3 cut(s)	629, 679, 1031
HpyCH4IV	ACGT	2 cut(s)	147, 340
HpyCH4V	TGCA	9 cut(s)	337, 565, 617, 726, 859, 883, 899, 983, 1039
HpyF10VI	GCNNNNNNNGC	7 cut(s)	562, 667, 905, 989, 994, 998, 1017
HpyF3I	CTNAG	4 cut(s)	428, 528, 606, 783
HpySE526I	ACGT	2 cut(s)	147, 340
Hsp92II	CATG	7 cut(s)	255, 337, 505, 545, 726, 1007, 1070
HspAI	GCGC	3 cut(s)	277, 372, 374
KroI	GCCGGC	1 cut(s)	997
KroNI	GCCGGC	1 cut(s)	999
Kzo9I	GATC	4 cut(s)	351, 531, 1006, 1073
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	4 cut(s)	908, 947, 1069, 1119
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	147, 340
MaeIII	GTNAC	2 cut(s)	798, 1055
MalI	GATC	4 cut(s)	353, 533, 1008, 1075
MboI	GATC	4 cut(s)	351, 531, 1006, 1073
MboII	GAAGA	4 cut(s)	127, 526, 976, 1130
MflI	RGATCY	2 cut(s)	351, 531
MhlI	GDGCHC	2 cut(s)	722, 760
MlsI	TGGCCA	1 cut(s)	992
MluCI	AATT	8 cut(s)	167, 682, 862, 877, 915, 978, 1042, 1151
MluNI	TGGCCA	1 cut(s)	992
MmeI	TCCRAC	2 cut(s)	849, 1051
MnlI	CCTC	5 cut(s)	286, 361, 423, 947, 1152
Mox20I	TGGCCA	1 cut(s)	992
Mph1103I	ATGCAT	1 cut(s)	901
MroNI	GCCGGC	1 cut(s)	997
MroXI	GAANNNNTTC	3 cut(s)	72, 158, 405
MscI	TGGCCA	1 cut(s)	992
MseI	TTAA	6 cut(s)	135, 258, 303, 465, 681, 918
Msp20I	TGGCCA	1 cut(s)	992
MspI	CCGG	4 cut(s)	191, 998, 1095, 1145
MspR9I	CCNGG	4 cut(s)	143, 206, 347, 1146
MvaI	CCWGG	3 cut(s)	143, 206, 347
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	7 cut(s)	562, 667, 905, 989, 994, 998, 1017
NaeI	GCCGGC	1 cut(s)	999
NciI	CCSGG	1 cut(s)	1146
NcoI	CCATGG	1 cut(s)	251
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	4 cut(s)	351, 531, 1006, 1073
NgoMIV	GCCGGC	1 cut(s)	997
NlaIII	CATG	7 cut(s)	255, 337, 505, 545, 726, 1007, 1070
NlaIV	GGNNCC	3 cut(s)	203, 353, 958
NmuCI	GTSAC	1 cut(s)	1055
NsiI	ATGCAT	1 cut(s)	901
NspI	RCATGY	2 cut(s)	337, 505
PaeI	GCATGC	1 cut(s)	337
PagI	TCATGA	1 cut(s)	541
PauI	GCGCGC	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	999
PdmI	GAANNNNTTC	3 cut(s)	72, 158, 405
PfeI	GAWTC	3 cut(s)	361, 747, 806
PflFI	GACNNNGTC	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	1094
PkrI	GCNGC	1 cut(s)	519
PpuMI	RGGWCCY	2 cut(s)	139, 202
PshBI	ATTAAT	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	340
Psp5II	RGGWCCY	2 cut(s)	139, 202
Psp6I	CCWGG	3 cut(s)	141, 204, 345
PspFI	CCCAGC	1 cut(s)	934
PspGI	CCWGG	3 cut(s)	141, 204, 345
PspN4I	GGNNCC	3 cut(s)	203, 353, 958
PspPI	GGNCC	3 cut(s)	139, 202, 1000
PspPPI	RGGWCCY	2 cut(s)	139, 202
PsuI	RGATCY	2 cut(s)	351, 531
PsyI	GACNNNGTC	1 cut(s)	90
PteI	GCGCGC	1 cut(s)	372
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	6 cut(s)	135, 258, 303, 465, 681, 918
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	4 cut(s)	351, 531, 1006, 1073
Sau96I	GGNCC	3 cut(s)	139, 202, 1000
ScrFI	CCNGG	4 cut(s)	143, 206, 347, 1146
SduI	GDGCHC	2 cut(s)	722, 760
SfaNI	GCATC	4 cut(s)	908, 947, 1069, 1119
SfiI	GGCCNNNNNGGCC	1 cut(s)	998
SinI	GGWCC	2 cut(s)	139, 202
SphI	GCATGC	1 cut(s)	337
Sse9I	AATT	8 cut(s)	167, 682, 862, 877, 915, 978, 1042, 1151
SsiI	CCGC	1 cut(s)	505
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	4 cut(s)	141, 204, 345, 1144
StyI	CCWWGG	4 cut(s)	78, 251, 810, 903
TaaI	ACNGT	3 cut(s)	629, 679, 1031
TaiI	ACGT	2 cut(s)	150, 343
TaqI	TCGA	1 cut(s)	111
TasI	AATT	8 cut(s)	167, 682, 862, 877, 915, 978, 1042, 1151
TfiI	GAWTC	3 cut(s)	361, 747, 806
Tru1I	TTAA	6 cut(s)	135, 258, 303, 465, 681, 918
Tru9I	TTAA	6 cut(s)	135, 258, 303, 465, 681, 918
TscAI	CASTG	1 cut(s)	855
TseFI	GTSAC	1 cut(s)	1055
TseI	GCWGC	1 cut(s)	517
Tsp45I	GTSAC	1 cut(s)	1055
TspDTI	ATGAA	4 cut(s)	17, 791, 983, 1055
TspGWI	ACGGA	2 cut(s)	759, 1028
TspRI	CASTG	1 cut(s)	855
Tth111I	GACNNNGTC	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	139, 202
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	3 cut(s)	877, 1042, 1151
XceI	RCATGY	2 cut(s)	337, 505
XcmI	CCANNNNNNNNNTGG	4 cut(s)	195, 317, 669, 1067
XmnI	GAANNNNTTC	3 cut(s)	72, 158, 405
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.