Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016744

Physical Location & Seq

Genomic Coordinates Reverse (-)

1375092 .. 1377769

Gene Structure 2678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGAGTAATGGTGGGAATATCATTGATGTTGAGTCGGGGGAAGAAGATGATTCTTCAACGCAAGATTGCAACATGGAGACAGAAGACATTGAAACCACCGAAGAAACATATGGAGCAGATGGCCCTTTTGAGTACAATGGGAAAAATTTTCGTGAGCTGACGGTCAAGGACTTTGATGGGACTTATTTCAAGACTATTGAAGATGCTGAAAAGTTCTATGAAATTTATTCTGCTGCACTTGGGTTCCGTTTAAGGAGACAAAAGTGTGATCGGGGCCTGTCTGGCACTGTCCTAAGAAGAGTGTGGGTAAATAATCAAGTAAGGGGGCTTTCGAGCAATAGTCGTCCGCCCAGGCACAGCACGAGAGAGAAATGTATGGCTGCATTTGTTGTGCGGTATTCCAAGGAACTTGATGCTTATTATGTGAAAAGTTTTACTACTGAGCACACCCACGACTTACCAAAGCCTAACAAGGTGCAATCGCTTCTTTCTCATTGTGTTGGCAAGAAAGTGGATTTGGCAGAGGCAGTTGCAATGCCCAAAGCCAAAGAGGCAGTTGCAATGCCCAAAGCCAAAGAGTCAATCAAAGCCTCTGTTGCACATGAGCATCACCCATCAGGTGGAAATGAGTGTGTTGCTTCTACTAAAGAATTGGATTTGGCACACGCAGTTGCAGTACGCAAAGCCAAAGAGTCAATTAACACCTCTGCTGCATATGTGTATCGCCCGTCAGGTGGAAATGAGTTTGTGGGTTTAACTAAAGAATCGGATTTGGAGCAGGGAGTTGCAATGCGTAAAGGTTCAATCAACTCCACTGCTGCATCTCAGCACATGGTTGAACCAGCAGGTGGACATGCGTTTGTTAGTTTAACTAATAGATCGGATTTGGAGCGGGGAGTTGCAATGGGCAAAGGTTCAGTCAACTCTGCTGCTGCTTCTCAGCATATGGTTGAACCAGCAGGTGGACATGCGTTTGTGAGTTTAACTAATAGATCGGATTTGGTGCAGACAGTGGCAATGCAGAAAGAGTCAATCACAACCTCTAGTGCATATGAGTATATAGTTCATCCTGCGGGTGGATATGAGTTTGTGGATTTAATGAAGAGGGAGTTGTATAATAGCATCGACATAGAACGCCGAGAAGCTTTGTTGAATGGTGACGCACAAGCGGCAATTGCCTTCATGAATGCAAGGGCTGCAGAGGATCCCGAATTTTTTTGCAAGTTCAGCGTGGATGAGCGAGGCAGGCTTGGAAATTTGTTTTGGAGAGACTCTTGTTCATTGTTGGACTACACTAGGTTTGGGGATGTATTGATATTCGACTGTACATTCAAGACAAACATTTACCAGAGGCCCCTAGCTGTCTTTGTTGGTGCAAATAACCATCGGGGCACTGTATTGTTTGGATCTGCAATACTGGTTGATGATACCATTGATACCTACAAGTGGGCTTTGCAAACATTTTTGGGTGCGATGAAGGACAAAAAACCGATTTCTGTTCTGACTGACGGGGATGACAAAATACAAAATGCCGTTGTTGAAGTTTTTCCCAAGGCCAGACATCGTCTGTGTTCGTGGCACATCGAGAAGAACTTGGCTACAATCATTAAGGACCTGGACGTGGTGAAAGCTTTCACTCAATTTTTATACAATGCTATACCACCGGATGAGTGGGACCTGGGCTGGAAGTCTATGGTAGAGACCTATGGGCTTCAAGACAATCCATGGATTAATATGATGTACCACAGGCGCAAGAGATGGGCAGAGGCATTTTTTAAAGGTCATTTTTTTGGTGGAATGAGTAGCATGCAACGTTGCCAGGGGATCCATAGGAATCTGGAGGGCGCGCTAGGTAAGTATGACAGGTTTTGTGAATATATTCCCCGAATGGACAAGACCCTGAGGAAAATGAGAAATAATATTAGTGTGGATGACCTTAAATGCGAGAACTCAAAGCCAGTCATTATTACTCACATGCGGTCTTTGGAGCAGCAGATAGCTGAGATCTTCACTCATGACATCTACTTGCTGATAATGCACCAGATAGATTGGGAGAGAAAATACATAATCACCAAGTCTGAGCCATATGCACAAGGGGACGGTAAAGTGTTTCACCTGACCCAATATGACTTGCCACACAGGCATTGGACTGTTAATTACCACCATAATATAAGCAAAGTGTGGTTCTTGTGCTCATGCAAACTATTTCAGTCAGACGGAATCCCTTGTGCCCATATATTTTCAGTAATGAAAGCTGAGCTGATATTGAAGTTACCTGATTCCTTGGTTCTGAAGCGATGGACAATGGATGTGGGGAAGCCGGTGAACTTGCATAATTTGTCGGACAGGAATTTGCAAATGGTAAGGTATGCATCTTTGGCTTCAGAAATCAAAAGTATCTGTTTCCCAGCATCTATGACTGAAGGAGGAACCAAGAAGATGAAATGTGAAATTGCAAAGCTGGCCAAGCCGGCTCATGATCGCACGGAGAGCCAAAACCACAGTTTATTGCAGAATTTGATACATCGTCACCAACTTCATGTTGGATCAGACGCCCACAGCTTTACCGGTTTTTCAGTCGGCATCAATGCCGAACATTACGCTCGCAGTCTTCCTCCGGGTGAATTCAGAACCTATTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

881

Amino Acids

99.58

Weight (kDa)

7.23

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	71 - 153	1.9e-07	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	408 - 520	4.6e-06	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	437 - 531	1.7e-23	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016744)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00731
rosa_chinensis	RchiOBHm_Chr6g0251121
rosa_laevigata	RLG00000015482
rosa_multiflora	Rmu_co7984096.1_g000001 Rmu_sc0002219.1_g000011 Rmu_sc0002219.1_g000018 Rmu_sc0011355.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217020
rosa_samantha	Rh6AG008800 Rh6AG009300 Rh6BG002500 Rh6CG006200 Rh6DG006500
rosa_wichuraiana	Rw6G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	836, 950
Acc36I	ACCTGC	2 cut(s)	836, 950
AccB7I	CCANNNNNTGG	3 cut(s)	620, 848, 962
AccBSI	CCGCTC	1 cut(s)	892
AccII	CGCG	1 cut(s)	1847
AciI	CCGC	6 cut(s)	347, 394, 892, 1073, 1169, 1978
AclI	AACGTT	1 cut(s)	1813
AclWI	GGATC	6 cut(s)	1199, 1212, 1414, 1819, 1832, 2554
AcoI	YGGCCR	1 cut(s)	2463
AcsI	RAATTY	7 cut(s)	145, 222, 1211, 1255, 2350, 2515, 2624
AcuI	CTGAAG	3 cut(s)	2312, 2367, 2442
AcyI	GRCGYC	1 cut(s)	2553
AfaI	GTAC	4 cut(s)	134, 678, 1327, 1742
AfiI	CCNNNNNNNGG	7 cut(s)	620, 734, 848, 962, 1076, 1446, 1621
AgeI	ACCGGT	1 cut(s)	2567
AjiI	CACGTC	1 cut(s)	1621
AjnI	CCWGG	4 cut(s)	350, 1614, 1677, 1818
AjuI	GAANNNNNNNTTGG	4 cut(s)	500, 532, 1246, 1278
AluBI	AGCT	9 cut(s)	157, 1145, 1361, 1631, 2000, 2255, 2260, 2461, 2562
AluI	AGCT	9 cut(s)	157, 1145, 1361, 1631, 2000, 2255, 2260, 2461, 2562
Alw21I	GWGCWC	2 cut(s)	447, 2195
Alw26I	GTCTC	4 cut(s)	71, 250, 1263, 1694
AlwI	GGATC	6 cut(s)	1199, 1212, 1414, 1819, 1832, 2554
AoxI	GGCC	5 cut(s)	121, 274, 1352, 1554, 2463
ApeKI	GCWGC	8 cut(s)	233, 380, 710, 818, 929, 932, 1196, 1990
ApoI	RAATTY	7 cut(s)	145, 222, 1211, 1255, 2350, 2515, 2624
ArsI	GACNNNNNNTTYG	2 cut(s)	903, 935
AseI	ATTAAT	1 cut(s)	1731
AsiGI	ACCGGT	1 cut(s)	2567
Asp700I	GAANNNNTTC	3 cut(s)	1545, 1631, 1878
AspLEI	GCGC	3 cut(s)	1752, 1847, 1849
AspS9I	GGNCC	5 cut(s)	122, 274, 1353, 1612, 1675
AsuC2I	CCSGG	1 cut(s)	2619
AsuHPI	GGTGA	8 cut(s)	602, 1169, 1636, 2062, 2105, 2335, 2522, 2633
AvaII	GGWCC	2 cut(s)	1612, 1675
AxyI	CCTNAGG	1 cut(s)	1901
BaeGI	GKGCMC	2 cut(s)	1394, 2233
BalI	TGGCCA	1 cut(s)	2465
BamHI	GGATCC	2 cut(s)	1204, 1824
BauI	CACGAG	1 cut(s)	361
BbsI	GAAGAC	2 cut(s)	90, 2603
Bbv12I	GWGCWC	2 cut(s)	447, 2195
BbvI	GCAGC	8 cut(s)	220, 367, 697, 805, 916, 919, 1183, 2002
BccI	CCATC	6 cut(s)	113, 170, 622, 1392, 1752, 2292
BceAI	ACGGC	1 cut(s)	1517
BciT130I	CCWGG	4 cut(s)	352, 1616, 1679, 1820
BcnI	CCSGG	1 cut(s)	2619
BcoDI	GTCTC	4 cut(s)	71, 250, 1263, 1694
BfaI	CTAG	4 cut(s)	1044, 1296, 1358, 1850
BfmI	CTRYAG	1 cut(s)	1197
BfuAI	ACCTGC	2 cut(s)	836, 950
BglI	GCCNNNNNGGC	4 cut(s)	282, 551, 2140, 2471
BglII	AGATCT	1 cut(s)	2004
BisI	GCNGC	9 cut(s)	234, 381, 711, 819, 930, 933, 1170, 1197, 1991
BlpI	GCTNAGC	1 cut(s)	2256
BlsI	GCNGC	9 cut(s)	235, 382, 712, 820, 931, 934, 1171, 1198, 1992
Bme1390I	CCNGG	5 cut(s)	352, 1616, 1679, 1820, 2619
Bme18I	GGWCC	2 cut(s)	1612, 1675
BmgBI	CACGTC	1 cut(s)	1621
BmgT120I	GGNCC	5 cut(s)	122, 274, 1353, 1612, 1675
BmiI	GGNNCC	7 cut(s)	245, 275, 1206, 1355, 1676, 1826, 2431
BmrFI	CCNGG	5 cut(s)	352, 1616, 1679, 1820, 2619
BmsI	GCATC	8 cut(s)	193, 403, 616, 830, 1131, 2381, 2420, 2592
BpiI	GAAGAC	2 cut(s)	90, 2603
BpmI	CTGGAG	1 cut(s)	1859
Bpu1102I	GCTNAGC	1 cut(s)	2256
BpuMI	CCSGG	1 cut(s)	2619
BsaHI	GRCGYC	1 cut(s)	2553
BsaI	GGTCTC	1 cut(s)	1694
BsaJI	CCNNGG	7 cut(s)	350, 402, 1551, 1678, 1724, 1819, 2283
BsaWI	WCCGGW	2 cut(s)	1663, 2567
Bsc4I	CCNNNNNNNGG	7 cut(s)	620, 734, 848, 962, 1076, 1446, 1621
Bse118I	RCCGGY	3 cut(s)	2320, 2470, 2567
Bse1I	ACTGG	2 cut(s)	1422, 1958
Bse21I	CCTNAGG	1 cut(s)	1901
Bse3DI	GCAATG	5 cut(s)	540, 567, 795, 909, 1023
BseBI	CCWGG	4 cut(s)	352, 1616, 1679, 1820
BseDI	CCNNGG	7 cut(s)	350, 402, 1551, 1678, 1724, 1819, 2283
BseGI	GGATG	7 cut(s)	1066, 1240, 1312, 1519, 1672, 1936, 2314
BseLI	CCNNNNNNNGG	7 cut(s)	620, 734, 848, 962, 1076, 1446, 1621
BseMI	GCAATG	5 cut(s)	540, 567, 795, 909, 1023
BseMII	CTCAG	7 cut(s)	432, 839, 953, 1892, 1992, 2070, 2247
BseNI	ACTGG	2 cut(s)	1422, 1958
BsePI	GCGCGC	1 cut(s)	1845
BseSI	GKGCMC	2 cut(s)	1394, 2233
BseXI	GCAGC	8 cut(s)	220, 367, 697, 805, 916, 919, 1183, 2002
BseYI	CCCAGC	1 cut(s)	2407
BsgI	GTGCAG	2 cut(s)	219, 1025
Bsh1236I	CGCG	1 cut(s)	1847
BshFI	GGCC	5 cut(s)	123, 276, 1354, 1556, 2465
BshTI	ACCGGT	1 cut(s)	2567
BsiHKAI	GWGCWC	2 cut(s)	447, 2195
BsiSI	CCGG	5 cut(s)	1664, 2321, 2471, 2568, 2618
BslFI	GGGAC	3 cut(s)	193, 1688, 2111
BslI	CCNNNNNNNGG	7 cut(s)	620, 734, 848, 962, 1076, 1446, 1621
BsmAI	GTCTC	4 cut(s)	71, 250, 1263, 1694
BsmFI	GGGAC	3 cut(s)	193, 1688, 2111
BsmI	GAATGC	1 cut(s)	1192
BsnI	GGCC	5 cut(s)	123, 276, 1354, 1556, 2465
Bso31I	GGTCTC	1 cut(s)	1694
Bsp1286I	GDGCHC	4 cut(s)	447, 1394, 2195, 2233
Bsp1407I	TGTACA	1 cut(s)	1325
Bsp143I	GATC	9 cut(s)	268, 878, 992, 1204, 1406, 1824, 2004, 2479, 2546
Bsp1720I	GCTNAGC	1 cut(s)	2256
Bsp19I	CCATGG	1 cut(s)	1724
BspACI	CCGC	6 cut(s)	347, 394, 892, 1073, 1169, 1978
BspANI	GGCC	5 cut(s)	123, 276, 1354, 1556, 2465
BspCNI	CTCAG	7 cut(s)	433, 838, 952, 1893, 1993, 2071, 2248
BspFNI	CGCG	1 cut(s)	1847
BspHI	TCATGA	3 cut(s)	1182, 2014, 2476
BspLI	GGNNCC	7 cut(s)	245, 275, 1206, 1355, 1676, 1826, 2431
BspMAI	CTGCAG	1 cut(s)	1201
BspMI	ACCTGC	2 cut(s)	836, 950
BspPI	GGATC	6 cut(s)	1199, 1212, 1414, 1819, 1832, 2554
BspTNI	GGTCTC	1 cut(s)	1694
BsrBI	CCGCTC	1 cut(s)	892
BsrDI	GCAATG	5 cut(s)	540, 567, 795, 909, 1023
BsrFI	RCCGGY	3 cut(s)	2320, 2470, 2567
BsrGI	TGTACA	1 cut(s)	1325
BsrI	ACTGG	2 cut(s)	1422, 1958
BssAI	RCCGGY	3 cut(s)	2320, 2470, 2567
BssECI	CCNNGG	7 cut(s)	350, 402, 1551, 1678, 1724, 1819, 2283
BssHII	GCGCGC	1 cut(s)	1845
BssMI	GATC	9 cut(s)	268, 878, 992, 1204, 1406, 1824, 2004, 2479, 2546
BssNI	GRCGYC	1 cut(s)	2553
BssSI	CACGAG	1 cut(s)	361
BssT1I	CCWWGG	4 cut(s)	402, 1551, 1724, 2283
Bst2BI	CACGAG	1 cut(s)	361
Bst2UI	CCWGG	4 cut(s)	352, 1616, 1679, 1820
Bst4CI	ACNGT	8 cut(s)	163, 289, 1012, 1325, 1396, 2102, 2152, 2504
Bst6I	CTCTTC	2 cut(s)	292, 1097
BstACI	GRCGYC	1 cut(s)	2553
BstAPI	GCANNNNNTGC	1 cut(s)	1196
BstAUI	TGTACA	1 cut(s)	1325
BstC8I	GCNNGC	6 cut(s)	1247, 1808, 1847, 2463, 2472, 2605
BstDEI	CTNAG	8 cut(s)	293, 441, 825, 939, 1901, 2001, 2079, 2256
BstDSI	CCRYGG	1 cut(s)	1724
BstF5I	GGATG	7 cut(s)	1066, 1240, 1312, 1519, 1672, 1936, 2314
BstFNI	CGCG	1 cut(s)	1847
BstHHI	GCGC	3 cut(s)	1752, 1847, 1849
BstKTI	GATC	9 cut(s)	271, 881, 995, 1207, 1409, 1827, 2007, 2482, 2549
BstMAI	GTCTC	4 cut(s)	71, 250, 1263, 1694
BstMBI	GATC	9 cut(s)	268, 878, 992, 1204, 1406, 1824, 2004, 2479, 2546
BstNI	CCWGG	4 cut(s)	352, 1616, 1679, 1820
BstNSI	RCATGY	4 cut(s)	857, 971, 1810, 1978
BstSCI	CCNGG	5 cut(s)	350, 1614, 1677, 1818, 2617
BstSFI	CTRYAG	1 cut(s)	1197
BstSLI	GKGCMC	2 cut(s)	1394, 2233
BstUI	CGCG	1 cut(s)	1847
BstV1I	GCAGC	8 cut(s)	220, 367, 697, 805, 916, 919, 1183, 2002
BstV2I	GAAGAC	2 cut(s)	90, 2603
BstX2I	RGATCY	4 cut(s)	1204, 1406, 1824, 2004
BstYI	RGATCY	4 cut(s)	1204, 1406, 1824, 2004
Bsu36I	CCTNAGG	1 cut(s)	1901
BsuRI	GGCC	5 cut(s)	123, 276, 1354, 1556, 2465
BtgI	CCRYGG	1 cut(s)	1724
BtgZI	GCGATG	2 cut(s)	1487, 2311
BtrI	CACGTC	1 cut(s)	1621
BtsCI	GGATG	7 cut(s)	1066, 1240, 1312, 1519, 1672, 1936, 2314
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	4 cut(s)	285, 813, 1017, 1392
BveI	ACCTGC	2 cut(s)	836, 950
Cac8I	GCNNGC	6 cut(s)	1247, 1808, 1847, 2463, 2472, 2605
CciI	TCATGA	3 cut(s)	1182, 2014, 2476
CfoI	GCGC	3 cut(s)	1752, 1847, 1849
Cfr10I	RCCGGY	3 cut(s)	2320, 2470, 2567
Cfr13I	GGNCC	5 cut(s)	122, 274, 1353, 1612, 1675
CseI	GACGC	2 cut(s)	1169, 2561
Csp6I	GTAC	4 cut(s)	133, 677, 1326, 1741
CspAI	ACCGGT	1 cut(s)	2567
CspCI	CAANNNNNGTGG	2 cut(s)	2292, 2327
CviQI	GTAC	4 cut(s)	133, 677, 1326, 1741
DdeI	CTNAG	8 cut(s)	293, 441, 825, 939, 1901, 2001, 2079, 2256
DpnI	GATC	9 cut(s)	270, 880, 994, 1206, 1408, 1826, 2006, 2481, 2548
DpnII	GATC	9 cut(s)	268, 878, 992, 1204, 1406, 1824, 2004, 2479, 2546
DraI	TTTAAA	1 cut(s)	1777
EaeI	YGGCCR	1 cut(s)	2463
Eam1104I	CTCTTC	2 cut(s)	292, 1097
EarI	CTCTTC	2 cut(s)	292, 1097
EciI	GGCGGA	1 cut(s)	336
Eco130I	CCWWGG	4 cut(s)	402, 1551, 1724, 2283
Eco31I	GGTCTC	1 cut(s)	1694
Eco47I	GGWCC	2 cut(s)	1612, 1675
Eco57I	CTGAAG	3 cut(s)	2312, 2367, 2442
Eco81I	CCTNAGG	1 cut(s)	1901
EcoO109I	RGGNCCY	4 cut(s)	274, 1353, 1612, 1675
EcoRI	GAATTC	1 cut(s)	2624
EcoRII	CCWGG	4 cut(s)	350, 1614, 1677, 1818
EcoT14I	CCWWGG	4 cut(s)	402, 1551, 1724, 2283
EcoT22I	ATGCAT	1 cut(s)	2374
ErhI	CCWWGG	4 cut(s)	402, 1551, 1724, 2283
FaqI	GGGAC	3 cut(s)	193, 1688, 2111
FauI	CCCGC	2 cut(s)	885, 1066
FauNDI	CATATG	5 cut(s)	109, 715, 945, 1051, 2086
Fnu4HI	GCNGC	9 cut(s)	234, 381, 711, 819, 930, 933, 1170, 1197, 1991
FokI	GGATG	7 cut(s)	1053, 1247, 1319, 1526, 1679, 1943, 2321
Fsp4HI	GCNGC	9 cut(s)	234, 381, 711, 819, 930, 933, 1170, 1197, 1991
FspBI	CTAG	4 cut(s)	1044, 1296, 1358, 1850
GlaI	GCGC	3 cut(s)	1751, 1846, 1848
GluI	GCNGC	9 cut(s)	234, 381, 711, 819, 930, 933, 1170, 1197, 1991
GsaI	CCCAGC	1 cut(s)	2411
GsuI	CTGGAG	1 cut(s)	1859
HaeIII	GGCC	5 cut(s)	123, 276, 1354, 1556, 2465
HapII	CCGG	5 cut(s)	1664, 2321, 2471, 2568, 2618
HgaI	GACGC	2 cut(s)	1169, 2561
HhaI	GCGC	3 cut(s)	1752, 1847, 1849
Hin1I	GRCGYC	1 cut(s)	2553
Hin6I	GCGC	3 cut(s)	1750, 1845, 1847
HinP1I	GCGC	3 cut(s)	1750, 1845, 1847
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HindIII	AAGCTT	2 cut(s)	1143, 1629
HpaII	CCGG	5 cut(s)	1664, 2321, 2471, 2568, 2618
HphI	GGTGA	8 cut(s)	602, 1169, 1636, 2062, 2105, 2335, 2522, 2633
Hpy166II	GTNNAC	4 cut(s)	851, 922, 965, 2326
Hpy8I	GTNNAC	4 cut(s)	851, 922, 965, 2326
HpyAV	CCTTC	3 cut(s)	1189, 1471, 2417
HpyCH4III	ACNGT	8 cut(s)	163, 289, 1012, 1325, 1396, 2102, 2152, 2504
HpyCH4IV	ACGT	2 cut(s)	1620, 1813
HpyF3I	CTNAG	8 cut(s)	293, 441, 825, 939, 1901, 2001, 2079, 2256
HpySE526I	ACGT	2 cut(s)	1620, 1813
Hsp92I	GRCGYC	1 cut(s)	2553
HspAI	GCGC	3 cut(s)	1750, 1845, 1847
KroI	GCCGGC	1 cut(s)	2470
KroNI	GCCGGC	1 cut(s)	2472
Kzo9I	GATC	9 cut(s)	268, 878, 992, 1204, 1406, 1824, 2004, 2479, 2546
LmnI	GCTCC	4 cut(s)	113, 775, 889, 1987
Lsp1109I	GCAGC	8 cut(s)	220, 367, 697, 805, 916, 919, 1183, 2002
LweI	GCATC	8 cut(s)	193, 403, 616, 830, 1131, 2381, 2420, 2592
MaeI	CTAG	4 cut(s)	1044, 1296, 1358, 1850
MaeII	ACGT	2 cut(s)	1620, 1813
MaeIII	GTNAC	3 cut(s)	1157, 2271, 2528
MalI	GATC	9 cut(s)	270, 880, 994, 1206, 1408, 1826, 2006, 2481, 2548
MbiI	CCGCTC	1 cut(s)	892
MboI	GATC	9 cut(s)	268, 878, 992, 1204, 1406, 1824, 2004, 2479, 2546
MfeI	CAATTG	1 cut(s)	1173
MflI	RGATCY	4 cut(s)	1204, 1406, 1824, 2004
MhlI	GDGCHC	4 cut(s)	447, 1394, 2195, 2233
MlsI	TGGCCA	1 cut(s)	2465
MluNI	TGGCCA	1 cut(s)	2465
MlyI	GAGTC	5 cut(s)	41, 587, 701, 1037, 1265
MmeI	TCCRAC	3 cut(s)	1266, 2322, 2524
Mox20I	TGGCCA	1 cut(s)	2465
Mph1103I	ATGCAT	1 cut(s)	2374
MroNI	GCCGGC	1 cut(s)	2470
MroXI	GAANNNNTTC	3 cut(s)	1545, 1631, 1878
MscI	TGGCCA	1 cut(s)	2465
Msp20I	TGGCCA	1 cut(s)	2465
MspI	CCGG	5 cut(s)	1664, 2321, 2471, 2568, 2618
MspR9I	CCNGG	5 cut(s)	352, 1616, 1679, 1820, 2619
MunI	CAATTG	1 cut(s)	1173
Mva1269I	GAATGC	1 cut(s)	1192
MvaI	CCWGG	4 cut(s)	352, 1616, 1679, 1820
MvnI	CGCG	1 cut(s)	1847
NaeI	GCCGGC	1 cut(s)	2472
NciI	CCSGG	1 cut(s)	2619
NcoI	CCATGG	1 cut(s)	1724
NdeI	CATATG	5 cut(s)	109, 715, 945, 1051, 2086
NdeII	GATC	9 cut(s)	268, 878, 992, 1204, 1406, 1824, 2004, 2479, 2546
NgoMIV	GCCGGC	1 cut(s)	2470
NlaIV	GGNNCC	7 cut(s)	245, 275, 1206, 1355, 1676, 1826, 2431
NmeAIII	GCCGAG	1 cut(s)	1163
NmuCI	GTSAC	2 cut(s)	1157, 2528
NsiI	ATGCAT	1 cut(s)	2374
NspI	RCATGY	4 cut(s)	857, 971, 1810, 1978
PaeI	GCATGC	1 cut(s)	1810
PagI	TCATGA	3 cut(s)	1182, 2014, 2476
PaqCI	CACCTGC	2 cut(s)	836, 950
PauI	GCGCGC	1 cut(s)	1845
PctI	GAATGC	1 cut(s)	1192
PdiI	GCCGGC	1 cut(s)	2472
PdmI	GAANNNNTTC	3 cut(s)	1545, 1631, 1878
PfeI	GAWTC	5 cut(s)	50, 764, 1834, 2220, 2279
PflFI	GACNNNGTC	1 cut(s)	1563
PflMI	CCANNNNNTGG	3 cut(s)	620, 848, 962
PinAI	ACCGGT	1 cut(s)	2567
PkrI	GCNGC	9 cut(s)	235, 382, 712, 820, 931, 934, 1171, 1198, 1992
PleI	GAGTC	5 cut(s)	40, 586, 700, 1036, 1265
PpsI	GAGTC	5 cut(s)	40, 586, 700, 1036, 1265
PpuMI	RGGWCCY	2 cut(s)	1612, 1675
PshBI	ATTAAT	1 cut(s)	1731
Psp1406I	AACGTT	1 cut(s)	1813
Psp5II	RGGWCCY	2 cut(s)	1612, 1675
Psp6I	CCWGG	4 cut(s)	350, 1614, 1677, 1818
PspFI	CCCAGC	1 cut(s)	2407
PspGI	CCWGG	4 cut(s)	350, 1614, 1677, 1818
PspN4I	GGNNCC	7 cut(s)	245, 275, 1206, 1355, 1676, 1826, 2431
PspPI	GGNCC	5 cut(s)	122, 274, 1353, 1612, 1675
PspPPI	RGGWCCY	2 cut(s)	1612, 1675
PstI	CTGCAG	1 cut(s)	1201
PsuI	RGATCY	4 cut(s)	1204, 1406, 1824, 2004
PsyI	GACNNNGTC	1 cut(s)	1563
PteI	GCGCGC	1 cut(s)	1845
RsaI	GTAC	4 cut(s)	134, 678, 1327, 1742
RsaNI	GTAC	4 cut(s)	133, 677, 1326, 1741
SatI	GCNGC	9 cut(s)	234, 381, 711, 819, 930, 933, 1170, 1197, 1991
Sau3AI	GATC	9 cut(s)	268, 878, 992, 1204, 1406, 1824, 2004, 2479, 2546
Sau96I	GGNCC	5 cut(s)	122, 274, 1353, 1612, 1675
SchI	GAGTC	5 cut(s)	41, 587, 701, 1037, 1265
ScrFI	CCNGG	5 cut(s)	352, 1616, 1679, 1820, 2619
SduI	GDGCHC	4 cut(s)	447, 1394, 2195, 2233
SfaNI	GCATC	8 cut(s)	193, 403, 616, 830, 1131, 2381, 2420, 2592
SfcI	CTRYAG	1 cut(s)	1197
SinI	GGWCC	2 cut(s)	1612, 1675
SphI	GCATGC	1 cut(s)	1810
SsiI	CCGC	6 cut(s)	347, 394, 892, 1073, 1169, 1978
SspI	AATATT	1 cut(s)	1921
SspMI	CTAG	4 cut(s)	1044, 1296, 1358, 1850
StyD4I	CCNGG	5 cut(s)	350, 1614, 1677, 1818, 2617
StyI	CCWWGG	4 cut(s)	402, 1551, 1724, 2283
TaaI	ACNGT	8 cut(s)	163, 289, 1012, 1325, 1396, 2102, 2152, 2504
TaiI	ACGT	2 cut(s)	1623, 1816
TaqI	TCGA	4 cut(s)	332, 1125, 1320, 1584
TatI	WGTACW	2 cut(s)	132, 1325
TauI	GCSGC	1 cut(s)	1172
TfiI	GAWTC	5 cut(s)	50, 764, 1834, 2220, 2279
TscAI	CASTG	4 cut(s)	292, 820, 1017, 1399
TseFI	GTSAC	2 cut(s)	1157, 2528
TseI	GCWGC	8 cut(s)	233, 380, 710, 818, 929, 932, 1196, 1990
Tsp45I	GTSAC	2 cut(s)	1157, 2528
TspGWI	ACGGA	3 cut(s)	236, 2232, 2501
TspRI	CASTG	4 cut(s)	292, 820, 1017, 1399
Tth111I	GACNNNGTC	1 cut(s)	1563
Van91I	CCANNNNNTGG	3 cut(s)	620, 848, 962
VpaK11BI	GGWCC	2 cut(s)	1612, 1675
VspI	ATTAAT	1 cut(s)	1731
XapI	RAATTY	7 cut(s)	145, 222, 1211, 1255, 2350, 2515, 2624
XceI	RCATGY	4 cut(s)	857, 971, 1810, 1978
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1668, 2142, 2540
XmnI	GAANNNNTTC	3 cut(s)	1545, 1631, 1878
XspI	CTAG	4 cut(s)	1044, 1296, 1358, 1850
Zsp2I	ATGCAT	1 cut(s)	2374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.