Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016744

Physical Location & Seq

Genomic Coordinates Reverse (-)

1035957 .. 1036715

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG008800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACAAGACCCTGAGGAAAATGAGAAATAATATTAGTGTGGATGACCTTAAATGCGAGAACTCAAAGCCAGTCATTATTACTCACATGCGGTCTTTGGAGCAGCAGATAGCTGAGATCTTCACTCATGACATCTACTTGCTGATAATGCACCAGATAGATTGGGAGAGAAAATACATAATCACCAAGTCTGAGCCATATGCACAAGGGGACGGTAAAGTGTTTCACCTGACCCAATATGACTTGCCACACAGGCATTGGACTGTTAATTACCACCATAATATAAGCAAAGTGTGGTTCTTGTGCTCATGCAAACTATTTCAGTCAGACGGAATCCCTTGTGCCCATATATTTTCAGTAATGAAAGCTGAGCTGATATTGAAGTTACCTGAATCCTTGGTTCTGAAGCGATGGACAATGGATGTGGGGAAGCCAGTGAACTTGCATAATTTGTCGGACAGGAATTTGCAAATGGTAAGGTATGCATCCTTGGCTTCAGAAATCAAAAGTATATGTTTCCCAGCTTCAATGACTGAAGGAGGAACCAAGAAGATGAAATGTGAAATTGCAAAGCTGGCCAAGCCGGCCCATGATCGCACGGAGAGCCAAAACCACAGTTTATTGCAGAATTTGATACATCGTCACCAACTTCATGTTGGATCAGACGCCCACAGCTTTACCGGTTTTTCAGTTGGCATCAATGCCGAACATTACGCTCGCAGTCTTCCTCCGGGTGAATTCAGAACCTATTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

252

Amino Acids

29.22

Weight (kDa)

8.94

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016744)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00731
rosa_chinensis	RchiOBHm_Chr6g0251121
rosa_laevigata	RLG00000015482
rosa_multiflora	Rmu_co7984096.1_g000001 Rmu_sc0002219.1_g000011 Rmu_sc0002219.1_g000018 Rmu_sc0011355.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217020
rosa_samantha	Rh6AG008800 Rh6AG009300 Rh6BG002500 Rh6CG006200 Rh6DG006500
rosa_wichuraiana	Rw6G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	91
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	3 cut(s)	463, 628, 737
AcuI	CTGAAG	3 cut(s)	425, 480, 555
AcyI	GRCGYC	1 cut(s)	666
AgeI	ACCGGT	1 cut(s)	680
AgsI	TTSAA	2 cut(s)	382, 528
AluBI	AGCT	6 cut(s)	113, 368, 373, 524, 574, 675
AluI	AGCT	6 cut(s)	113, 368, 373, 524, 574, 675
Alw21I	GWGCWC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	667
AoxI	GGCC	2 cut(s)	576, 585
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	3 cut(s)	463, 628, 737
AsiGI	ACCGGT	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	586
AsuC2I	CCSGG	1 cut(s)	732
AsuHPI	GGTGA	4 cut(s)	175, 218, 635, 746
AxyI	CCTNAGG	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	732
BglI	GCCNNNNNGGC	2 cut(s)	253, 584
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	1 cut(s)	104
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	732
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	732
BmsI	GCATC	2 cut(s)	494, 705
BpiI	GAAGAC	1 cut(s)	716
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	732
BsaHI	GRCGYC	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	396, 489
BsaWI	WCCGGW	1 cut(s)	680
Bse118I	RCCGGY	2 cut(s)	583, 680
Bse1I	ACTGG	2 cut(s)	71, 434
Bse21I	CCTNAGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	396, 489
BseGI	GGATG	3 cut(s)	49, 427, 485
BseMII	CTCAG	4 cut(s)	5, 105, 183, 360
BseNI	ACTGG	2 cut(s)	71, 434
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	520
BshFI	GGCC	2 cut(s)	578, 587
BshTI	ACCGGT	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	584, 681, 731
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	578, 587
Bsp1286I	GDGCHC	2 cut(s)	308, 346
Bsp143I	GATC	3 cut(s)	117, 592, 659
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	2 cut(s)	578, 587
BspCNI	CTCAG	4 cut(s)	6, 106, 184, 361
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	544
BspPI	GGATC	1 cut(s)	667
BsrFI	RCCGGY	2 cut(s)	583, 680
BsrI	ACTGG	2 cut(s)	71, 434
BssAI	RCCGGY	2 cut(s)	583, 680
BssECI	CCNNGG	2 cut(s)	396, 489
BssMI	GATC	3 cut(s)	117, 592, 659
BssNI	GRCGYC	1 cut(s)	666
BssT1I	CCWWGG	2 cut(s)	396, 489
Bst4CI	ACNGT	3 cut(s)	215, 265, 617
BstACI	GRCGYC	1 cut(s)	666
BstC8I	GCNNGC	3 cut(s)	576, 585, 718
BstDEI	CTNAG	4 cut(s)	14, 114, 192, 369
BstF5I	GGATG	3 cut(s)	49, 427, 485
BstKTI	GATC	3 cut(s)	120, 595, 662
BstMBI	GATC	3 cut(s)	117, 592, 659
BstMWI	GCNNNNNNNGC	7 cut(s)	148, 253, 491, 575, 580, 584, 603
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	730
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu36I	CCTNAGG	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	578, 587
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	49, 427, 485
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	576, 585, 718
CciI	TCATGA	1 cut(s)	127
Cfr10I	RCCGGY	2 cut(s)	583, 680
Cfr13I	GGNCC	1 cut(s)	586
CseI	GACGC	1 cut(s)	674
CspAI	ACCGGT	1 cut(s)	680
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviAII	CATG	5 cut(s)	88, 128, 309, 590, 653
DdeI	CTNAG	4 cut(s)	14, 114, 192, 369
DpnI	GATC	3 cut(s)	119, 594, 661
DpnII	GATC	3 cut(s)	117, 592, 659
EaeI	YGGCCR	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	396, 489
Eco57I	CTGAAG	3 cut(s)	425, 480, 555
Eco81I	CCTNAGG	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	737
EcoT14I	CCWWGG	2 cut(s)	396, 489
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	396, 489
FaeI	CATG	5 cut(s)	91, 131, 312, 593, 656
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	5 cut(s)	87, 127, 308, 589, 652
FauNDI	CATATG	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	3 cut(s)	56, 434, 472
Fsp4HI	GCNGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	104
GsaI	CCCAGC	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	578, 587
HapII	CCGG	3 cut(s)	584, 681, 731
HgaI	GACGC	1 cut(s)	674
Hin1I	GRCGYC	1 cut(s)	666
Hin1II	CATG	5 cut(s)	91, 131, 312, 593, 656
HinfI	GANTC	2 cut(s)	333, 392
HpaII	CCGG	3 cut(s)	584, 681, 731
HphI	GGTGA	4 cut(s)	175, 218, 635, 746
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	7 cut(s)	193, 328, 405, 457, 499, 664, 743
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	3 cut(s)	215, 265, 617
HpyCH4V	TGCA	8 cut(s)	151, 203, 312, 445, 469, 485, 569, 625
HpyF10VI	GCNNNNNNNGC	7 cut(s)	148, 253, 491, 575, 580, 584, 603
HpyF3I	CTNAG	4 cut(s)	14, 114, 192, 369
Hsp92I	GRCGYC	1 cut(s)	666
Hsp92II	CATG	5 cut(s)	91, 131, 312, 593, 656
KroI	GCCGGC	1 cut(s)	583
KroNI	GCCGGC	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	117, 592, 659
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	2 cut(s)	494, 705
MaeIII	GTNAC	2 cut(s)	384, 641
MalI	GATC	3 cut(s)	119, 594, 661
MboI	GATC	3 cut(s)	117, 592, 659
MboII	GAAGA	3 cut(s)	112, 562, 716
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	308, 346
MlsI	TGGCCA	1 cut(s)	578
MluCI	AATT	6 cut(s)	268, 448, 463, 564, 628, 737
MluNI	TGGCCA	1 cut(s)	578
MmeI	TCCRAC	2 cut(s)	435, 637
MnlI	CCTC	3 cut(s)	9, 533, 738
Mox20I	TGGCCA	1 cut(s)	578
Mph1103I	ATGCAT	1 cut(s)	487
MroNI	GCCGGC	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	578
MseI	TTAA	2 cut(s)	51, 267
Msp20I	TGGCCA	1 cut(s)	578
MspI	CCGG	3 cut(s)	584, 681, 731
MspR9I	CCNGG	1 cut(s)	732
MwoI	GCNNNNNNNGC	7 cut(s)	148, 253, 491, 575, 580, 584, 603
NaeI	GCCGGC	1 cut(s)	585
NciI	CCSGG	1 cut(s)	732
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	3 cut(s)	117, 592, 659
NgoMIV	GCCGGC	1 cut(s)	583
NlaIII	CATG	5 cut(s)	91, 131, 312, 593, 656
NlaIV	GGNNCC	1 cut(s)	544
NmuCI	GTSAC	1 cut(s)	641
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	91
PagI	TCATGA	1 cut(s)	127
PdiI	GCCGGC	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	333, 392
PinAI	ACCGGT	1 cut(s)	680
PkrI	GCNGC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	520
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	51, 267
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	3 cut(s)	117, 592, 659
Sau96I	GGNCC	1 cut(s)	586
ScrFI	CCNGG	1 cut(s)	732
SduI	GDGCHC	2 cut(s)	308, 346
SfaNI	GCATC	2 cut(s)	494, 705
SfiI	GGCCNNNNNGGCC	1 cut(s)	584
Sse9I	AATT	6 cut(s)	268, 448, 463, 564, 628, 737
SsiI	CCGC	1 cut(s)	91
SspI	AATATT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	730
StyI	CCWWGG	2 cut(s)	396, 489
TaaI	ACNGT	3 cut(s)	215, 265, 617
TasI	AATT	6 cut(s)	268, 448, 463, 564, 628, 737
TfiI	GAWTC	2 cut(s)	333, 392
Tru1I	TTAA	2 cut(s)	51, 267
Tru9I	TTAA	2 cut(s)	51, 267
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	3 cut(s)	377, 569, 641
TspGWI	ACGGA	2 cut(s)	345, 614
TspRI	CASTG	1 cut(s)	441
XapI	RAATTY	3 cut(s)	463, 628, 737
XceI	RCATGY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	2 cut(s)	255, 653
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.