TIP41-like family
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0257521 |
| rosa_multiflora | Rmu_sc0004436.1_g000007 |
| rosa_rugosa | Rorug01G0074800 Rorug05G0571500 Rorug07G0261000 Rorug07G0261100 Rorug07G0261200 |
| rosa_samantha | Rh3BG366700 Rh6AG059000 Rh6BG052500 Rh6CG050200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 116 |
| AflIII | ACRYGT | 1 cut(s) | 192 |
| AgsI | TTSAA | 1 cut(s) | 74 |
| AluBI | AGCT | 4 cut(s) | 51, 65, 77, 175 |
| AluI | AGCT | 4 cut(s) | 51, 65, 77, 175 |
| AlwI | GGATC | 1 cut(s) | 116 |
| ApeKI | GCWGC | 4 cut(s) | 51, 83, 107, 110 |
| BbvI | GCAGC | 4 cut(s) | 38, 70, 94, 97 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 33, 67 |
| BciVI | GTATCC | 1 cut(s) | 86 |
| BfaI | CTAG | 2 cut(s) | 66, 186 |
| BfuI | GTATCC | 1 cut(s) | 86 |
| BisI | GCNGC | 4 cut(s) | 52, 84, 108, 111 |
| BlsI | GCNGC | 4 cut(s) | 53, 85, 109, 112 |
| BpmI | CTGGAG | 1 cut(s) | 76 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 9, 39 |
| BseXI | GCAGC | 4 cut(s) | 38, 70, 94, 97 |
| Bsp143I | GATC | 1 cut(s) | 121 |
| BspHI | TCATGA | 1 cut(s) | 156 |
| BspPI | GGATC | 1 cut(s) | 116 |
| BssMI | GATC | 1 cut(s) | 121 |
| Bst4CI | ACNGT | 1 cut(s) | 8 |
| BstKTI | GATC | 1 cut(s) | 124 |
| BstMBI | GATC | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 83 |
| BstNSI | RCATGY | 1 cut(s) | 196 |
| BstV1I | GCAGC | 4 cut(s) | 38, 70, 94, 97 |
| BsuI | GTATCC | 1 cut(s) | 86 |
| BtsIMutI | CAGTG | 1 cut(s) | 4 |
| CciI | TCATGA | 1 cut(s) | 156 |
| CseI | GACGC | 1 cut(s) | 113 |
| CviAII | CATG | 2 cut(s) | 157, 193 |
| CviJI | RGCY | 7 cut(s) | 51, 65, 77, 83, 138, 145, 175 |
| CviKI_1 | RGCY | 7 cut(s) | 51, 65, 77, 83, 138, 145, 175 |
| DpnI | GATC | 1 cut(s) | 123 |
| DpnII | GATC | 1 cut(s) | 121 |
| FaeI | CATG | 2 cut(s) | 160, 196 |
| FaiI | YATR | 3 cut(s) | 158, 171, 194 |
| FatI | CATG | 2 cut(s) | 156, 192 |
| Fnu4HI | GCNGC | 4 cut(s) | 52, 84, 108, 111 |
| Fsp4HI | GCNGC | 4 cut(s) | 52, 84, 108, 111 |
| FspBI | CTAG | 2 cut(s) | 66, 186 |
| GluI | GCNGC | 4 cut(s) | 52, 84, 108, 111 |
| GsuI | CTGGAG | 1 cut(s) | 76 |
| HgaI | GACGC | 1 cut(s) | 113 |
| Hin1II | CATG | 2 cut(s) | 160, 196 |
| HindIII | AAGCTT | 1 cut(s) | 75 |
| Hpy188I | TCNGA | 1 cut(s) | 103 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 157 |
| HpyAV | CCTTC | 1 cut(s) | 108 |
| HpyCH4III | ACNGT | 1 cut(s) | 8 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 86 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 83 |
| Hsp92II | CATG | 2 cut(s) | 160, 196 |
| Kzo9I | GATC | 1 cut(s) | 121 |
| LpnPI | CCDG | 2 cut(s) | 40, 162 |
| Lsp1109I | GCAGC | 4 cut(s) | 38, 70, 94, 97 |
| MaeI | CTAG | 2 cut(s) | 66, 186 |
| MaeIII | GTNAC | 1 cut(s) | 188 |
| MalI | GATC | 1 cut(s) | 123 |
| MboI | GATC | 1 cut(s) | 121 |
| MboII | GAAGA | 1 cut(s) | 32 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 83 |
| NdeII | GATC | 1 cut(s) | 121 |
| NlaIII | CATG | 2 cut(s) | 160, 196 |
| NspI | RCATGY | 1 cut(s) | 196 |
| PagI | TCATGA | 1 cut(s) | 156 |
| PciI | ACATGT | 1 cut(s) | 192 |
| PkrI | GCNGC | 4 cut(s) | 53, 85, 109, 112 |
| PscI | ACATGT | 1 cut(s) | 192 |
| SatI | GCNGC | 4 cut(s) | 52, 84, 108, 111 |
| Sau3AI | GATC | 1 cut(s) | 121 |
| SetI | ASST | 6 cut(s) | 53, 67, 71, 79, 177, 183 |
| SgeI | CNNG | 7 cut(s) | 56, 67, 78, 86, 138, 161, 169 |
| SspMI | CTAG | 2 cut(s) | 66, 186 |
| TaaI | ACNGT | 1 cut(s) | 8 |
| TaqI | TCGA | 1 cut(s) | 43 |
| TseI | GCWGC | 4 cut(s) | 51, 83, 107, 110 |
| TspDTI | ATGAA | 1 cut(s) | 173 |
| XceI | RCATGY | 1 cut(s) | 196 |
| XspI | CTAG | 2 cut(s) | 66, 186 |