histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0257521 |
| rosa_multiflora | Rmu_sc0004436.1_g000007 |
| rosa_rugosa | Rorug01G0074800 Rorug05G0571500 Rorug07G0261000 Rorug07G0261100 Rorug07G0261200 |
| rosa_samantha | Rh3BG366700 Rh6AG059000 Rh6BG052500 Rh6CG050200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 106 |
| AclWI | GGATC | 2 cut(s) | 223, 519 |
| AcsI | RAATTY | 3 cut(s) | 260, 384, 402 |
| AdeI | CACNNNGTG | 1 cut(s) | 14 |
| AfaI | GTAC | 1 cut(s) | 537 |
| AflII | CTTAAG | 1 cut(s) | 568 |
| AluBI | AGCT | 2 cut(s) | 83, 320 |
| AluI | AGCT | 2 cut(s) | 83, 320 |
| Alw26I | GTCTC | 1 cut(s) | 504 |
| AlwI | GGATC | 2 cut(s) | 223, 519 |
| AoxI | GGCC | 1 cut(s) | 416 |
| ApoI | RAATTY | 3 cut(s) | 260, 384, 402 |
| AspS9I | GGNCC | 1 cut(s) | 416 |
| AsuHPI | GGTGA | 1 cut(s) | 113 |
| AxyI | CCTNAGG | 1 cut(s) | 36 |
| BbsI | GAAGAC | 2 cut(s) | 63, 183 |
| BccI | CCATC | 1 cut(s) | 349 |
| BcoDI | GTCTC | 1 cut(s) | 504 |
| BfaI | CTAG | 2 cut(s) | 300, 453 |
| BfrI | CTTAAG | 1 cut(s) | 568 |
| BmgT120I | GGNCC | 1 cut(s) | 416 |
| BmiI | GGNNCC | 2 cut(s) | 417, 458 |
| BmrI | ACTGGG | 1 cut(s) | 245 |
| BmsI | GCATC | 2 cut(s) | 91, 294 |
| BmuI | ACTGGG | 1 cut(s) | 245 |
| BpiI | GAAGAC | 2 cut(s) | 63, 183 |
| Bse1I | ACTGG | 2 cut(s) | 241, 251 |
| Bse21I | CCTNAGG | 1 cut(s) | 36 |
| BseGI | GGATG | 4 cut(s) | 110, 153, 325, 557 |
| BseMII | CTCAG | 1 cut(s) | 50 |
| BseNI | ACTGG | 2 cut(s) | 241, 251 |
| BseRI | GAGGAG | 3 cut(s) | 21, 24, 127 |
| BshFI | GGCC | 1 cut(s) | 418 |
| BsmAI | GTCTC | 1 cut(s) | 504 |
| BsnI | GGCC | 1 cut(s) | 418 |
| Bsp1407I | TGTACA | 1 cut(s) | 535 |
| Bsp143I | GATC | 4 cut(s) | 118, 142, 215, 524 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspANI | GGCC | 1 cut(s) | 418 |
| BspCNI | CTCAG | 1 cut(s) | 49 |
| BspLI | GGNNCC | 2 cut(s) | 417, 458 |
| BspPI | GGATC | 2 cut(s) | 223, 519 |
| BspQI | GCTCTTC | 1 cut(s) | 25 |
| BspTI | CTTAAG | 1 cut(s) | 568 |
| BsrGI | TGTACA | 1 cut(s) | 535 |
| BsrI | ACTGG | 2 cut(s) | 241, 251 |
| BssMI | GATC | 4 cut(s) | 118, 142, 215, 524 |
| Bst4CI | ACNGT | 4 cut(s) | 14, 189, 429, 515 |
| Bst6I | CTCTTC | 2 cut(s) | 25, 31 |
| BstAFI | CTTAAG | 1 cut(s) | 568 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 114, 291 |
| BstAUI | TGTACA | 1 cut(s) | 535 |
| BstC8I | GCNNGC | 1 cut(s) | 106 |
| BstDEI | CTNAG | 2 cut(s) | 36, 64 |
| BstF5I | GGATG | 4 cut(s) | 110, 153, 325, 557 |
| BstKTI | GATC | 4 cut(s) | 121, 145, 218, 527 |
| BstMAI | GTCTC | 1 cut(s) | 504 |
| BstMBI | GATC | 4 cut(s) | 118, 142, 215, 524 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 114, 291 |
| BstV2I | GAAGAC | 2 cut(s) | 63, 183 |
| BstX2I | RGATCY | 2 cut(s) | 215, 524 |
| BstYI | RGATCY | 2 cut(s) | 215, 524 |
| Bsu36I | CCTNAGG | 1 cut(s) | 36 |
| BsuRI | GGCC | 1 cut(s) | 418 |
| BtsCI | GGATG | 4 cut(s) | 110, 153, 325, 557 |
| BtsI | GCAGTG | 1 cut(s) | 172 |
| BtsIMutI | CAGTG | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 1 cut(s) | 416 |
| CseI | GACGC | 1 cut(s) | 465 |
| Csp6I | GTAC | 1 cut(s) | 536 |
| CviAII | CATG | 1 cut(s) | 436 |
| CviJI | RGCY | 6 cut(s) | 18, 83, 320, 418, 543, 573 |
| CviKI_1 | RGCY | 6 cut(s) | 18, 83, 320, 418, 543, 573 |
| CviQI | GTAC | 1 cut(s) | 536 |
| DdeI | CTNAG | 2 cut(s) | 36, 64 |
| DpnI | GATC | 4 cut(s) | 120, 144, 217, 526 |
| DpnII | GATC | 4 cut(s) | 118, 142, 215, 524 |
| DraIII | CACNNNGTG | 1 cut(s) | 14 |
| Eam1104I | CTCTTC | 2 cut(s) | 25, 31 |
| EarI | CTCTTC | 2 cut(s) | 25, 31 |
| Eco81I | CCTNAGG | 1 cut(s) | 36 |
| EcoO109I | RGGNCCY | 1 cut(s) | 416 |
| FaeI | CATG | 1 cut(s) | 439 |
| FatI | CATG | 1 cut(s) | 435 |
| FauI | CCCGC | 1 cut(s) | 113 |
| FokI | GGATG | 4 cut(s) | 97, 140, 312, 544 |
| FspBI | CTAG | 2 cut(s) | 300, 453 |
| HaeIII | GGCC | 1 cut(s) | 418 |
| HgaI | GACGC | 1 cut(s) | 465 |
| Hin1II | CATG | 1 cut(s) | 439 |
| HinfI | GANTC | 2 cut(s) | 86, 303 |
| HphI | GGTGA | 1 cut(s) | 113 |
| Hpy166II | GTNNAC | 1 cut(s) | 151 |
| Hpy188I | TCNGA | 2 cut(s) | 142, 258 |
| Hpy188III | TCNNGA | 2 cut(s) | 38, 381 |
| Hpy8I | GTNNAC | 1 cut(s) | 151 |
| HpyAV | CCTTC | 3 cut(s) | 134, 138, 470 |
| HpyCH4III | ACNGT | 4 cut(s) | 14, 189, 429, 515 |
| HpyCH4V | TGCA | 3 cut(s) | 177, 294, 468 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 114, 291 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 64 |
| Hsp92II | CATG | 1 cut(s) | 439 |
| Kzo9I | GATC | 4 cut(s) | 118, 142, 215, 524 |
| LguI | GCTCTTC | 1 cut(s) | 25 |
| LmnI | GCTCC | 1 cut(s) | 80 |
| LpnPI | CCDG | 7 cut(s) | 23, 127, 166, 177, 254, 264, 339 |
| LweI | GCATC | 2 cut(s) | 91, 294 |
| MaeI | CTAG | 2 cut(s) | 300, 453 |
| MaeIII | GTNAC | 5 cut(s) | 183, 332, 356, 429, 448 |
| MalI | GATC | 4 cut(s) | 120, 144, 217, 526 |
| MboI | GATC | 4 cut(s) | 118, 142, 215, 524 |
| MboII | GAAGA | 5 cut(s) | 12, 18, 68, 183, 355 |
| MfeI | CAATTG | 2 cut(s) | 48, 289 |
| MflI | RGATCY | 2 cut(s) | 215, 524 |
| MluCI | AATT | 9 cut(s) | 48, 200, 228, 260, 289, 349, 384, 402, 552 |
| MmeI | TCCRAC | 1 cut(s) | 552 |
| MnlI | CCTC | 7 cut(s) | 34, 42, 45, 148, 407, 429, 554 |
| MseI | TTAA | 2 cut(s) | 278, 569 |
| MslI | CAYNNNNRTG | 1 cut(s) | 438 |
| MspCI | CTTAAG | 1 cut(s) | 568 |
| MunI | CAATTG | 2 cut(s) | 48, 289 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 114, 291 |
| NdeII | GATC | 4 cut(s) | 118, 142, 215, 524 |
| NlaIII | CATG | 1 cut(s) | 439 |
| NlaIV | GGNNCC | 2 cut(s) | 417, 458 |
| NmuCI | GTSAC | 2 cut(s) | 332, 356 |
| PciSI | GCTCTTC | 1 cut(s) | 25 |
| PfeI | GAWTC | 2 cut(s) | 86, 303 |
| PspN4I | GGNNCC | 2 cut(s) | 417, 458 |
| PspPI | GGNCC | 1 cut(s) | 416 |
| PsuI | RGATCY | 2 cut(s) | 215, 524 |
| RsaI | GTAC | 1 cut(s) | 537 |
| RsaNI | GTAC | 1 cut(s) | 536 |
| RseI | CAYNNNNRTG | 1 cut(s) | 438 |
| SapI | GCTCTTC | 1 cut(s) | 25 |
| SaqAI | TTAA | 2 cut(s) | 278, 569 |
| Sau3AI | GATC | 4 cut(s) | 118, 142, 215, 524 |
| Sau96I | GGNCC | 1 cut(s) | 416 |
| SetI | ASST | 7 cut(s) | 85, 126, 185, 322, 358, 458, 552 |
| SfaNI | GCATC | 2 cut(s) | 91, 294 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 438 |
| SmlI | CTYRAG | 1 cut(s) | 568 |
| SmoI | CTYRAG | 1 cut(s) | 568 |
| Sse9I | AATT | 9 cut(s) | 48, 200, 228, 260, 289, 349, 384, 402, 552 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspMI | CTAG | 2 cut(s) | 300, 453 |
| TaaI | ACNGT | 4 cut(s) | 14, 189, 429, 515 |
| TaqI | TCGA | 1 cut(s) | 99 |
| TasI | AATT | 9 cut(s) | 48, 200, 228, 260, 289, 349, 384, 402, 552 |
| TatI | WGTACW | 1 cut(s) | 535 |
| TfiI | GAWTC | 2 cut(s) | 86, 303 |
| Tru1I | TTAA | 2 cut(s) | 278, 569 |
| Tru9I | TTAA | 2 cut(s) | 278, 569 |
| TscAI | CASTG | 1 cut(s) | 179 |
| TseFI | GTSAC | 2 cut(s) | 332, 356 |
| Tsp45I | GTSAC | 2 cut(s) | 332, 356 |
| TspDTI | ATGAA | 5 cut(s) | 295, 314, 396, 452, 456 |
| TspRI | CASTG | 1 cut(s) | 179 |
| Vha464I | CTTAAG | 1 cut(s) | 568 |
| XapI | RAATTY | 3 cut(s) | 260, 384, 402 |
| XspI | CTAG | 2 cut(s) | 300, 453 |