TIP41-like family
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0257521 |
| rosa_multiflora | Rmu_sc0004436.1_g000007 |
| rosa_rugosa | Rorug01G0074800 Rorug05G0571500 Rorug07G0261000 Rorug07G0261100 Rorug07G0261200 |
| rosa_samantha | Rh3BG366700 Rh6AG059000 Rh6BG052500 Rh6CG050200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 270 |
| Acc36I | ACCTGC | 1 cut(s) | 270 |
| AccB1I | GGYRCC | 1 cut(s) | 101 |
| AciI | CCGC | 1 cut(s) | 40 |
| AcuI | CTGAAG | 1 cut(s) | 206 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 111, 112, 138 |
| Ama87I | CYCGRG | 1 cut(s) | 105 |
| AoxI | GGCC | 1 cut(s) | 140 |
| AspLEI | GCGC | 1 cut(s) | 25 |
| AsuNHI | GCTAGC | 1 cut(s) | 127 |
| AvaI | CYCGRG | 1 cut(s) | 105 |
| BaeGI | GKGCMC | 1 cut(s) | 106 |
| BanI | GGYRCC | 1 cut(s) | 101 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| BfaI | CTAG | 1 cut(s) | 128 |
| BfuAI | ACCTGC | 1 cut(s) | 270 |
| BglII | AGATCT | 1 cut(s) | 189 |
| BmeT110I | CYCGRG | 1 cut(s) | 105 |
| BmiI | GGNNCC | 1 cut(s) | 103 |
| BmtI | GCTAGC | 1 cut(s) | 131 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 275 |
| BsaJI | CCNNGG | 1 cut(s) | 106 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 111, 112, 138 |
| Bse118I | RCCGGY | 1 cut(s) | 98 |
| BseDI | CCNNGG | 1 cut(s) | 106 |
| BseGI | GGATG | 1 cut(s) | 48 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 111, 112, 138 |
| BseMII | CTCAG | 2 cut(s) | 128, 266 |
| BseSI | GKGCMC | 1 cut(s) | 106 |
| BshFI | GGCC | 1 cut(s) | 142 |
| BshNI | GGYRCC | 1 cut(s) | 101 |
| BsiHKCI | CYCGRG | 1 cut(s) | 105 |
| BsiSI | CCGG | 1 cut(s) | 99 |
| BslFI | GGGAC | 1 cut(s) | 59 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 111, 112, 138 |
| BsmFI | GGGAC | 1 cut(s) | 59 |
| BsnI | GGCC | 1 cut(s) | 142 |
| BsoBI | CYCGRG | 1 cut(s) | 105 |
| Bsp1286I | GDGCHC | 1 cut(s) | 106 |
| Bsp143I | GATC | 1 cut(s) | 189 |
| BspACI | CCGC | 1 cut(s) | 40 |
| BspANI | GGCC | 1 cut(s) | 142 |
| BspCNI | CTCAG | 2 cut(s) | 129, 267 |
| BspLI | GGNNCC | 1 cut(s) | 103 |
| BspMI | ACCTGC | 1 cut(s) | 270 |
| BspOI | GCTAGC | 1 cut(s) | 131 |
| BspT107I | GGYRCC | 1 cut(s) | 101 |
| BsrFI | RCCGGY | 1 cut(s) | 98 |
| BssAI | RCCGGY | 1 cut(s) | 98 |
| BssECI | CCNNGG | 1 cut(s) | 106 |
| BssMI | GATC | 1 cut(s) | 189 |
| Bst6I | CTCTTC | 1 cut(s) | 206 |
| BstC8I | GCNNGC | 1 cut(s) | 129 |
| BstDEI | CTNAG | 2 cut(s) | 137, 275 |
| BstF5I | GGATG | 1 cut(s) | 48 |
| BstHHI | GCGC | 1 cut(s) | 25 |
| BstKTI | GATC | 1 cut(s) | 192 |
| BstMBI | GATC | 1 cut(s) | 189 |
| BstNSI | RCATGY | 1 cut(s) | 61 |
| BstSLI | GKGCMC | 1 cut(s) | 106 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BstX2I | RGATCY | 1 cut(s) | 189 |
| BstYI | RGATCY | 1 cut(s) | 189 |
| BsuRI | GGCC | 1 cut(s) | 142 |
| BtsCI | GGATG | 1 cut(s) | 48 |
| BveI | ACCTGC | 1 cut(s) | 270 |
| Cac8I | GCNNGC | 1 cut(s) | 129 |
| CfoI | GCGC | 1 cut(s) | 25 |
| Cfr10I | RCCGGY | 1 cut(s) | 98 |
| CviAII | CATG | 2 cut(s) | 58, 146 |
| CviJI | RGCY | 3 cut(s) | 65, 131, 142 |
| CviKI_1 | RGCY | 3 cut(s) | 65, 131, 142 |
| DdeI | CTNAG | 2 cut(s) | 137, 275 |
| DpnI | GATC | 1 cut(s) | 191 |
| DpnII | GATC | 1 cut(s) | 189 |
| Eam1104I | CTCTTC | 1 cut(s) | 206 |
| EarI | CTCTTC | 1 cut(s) | 206 |
| Eco147I | AGGCCT | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 1 cut(s) | 206 |
| Eco88I | CYCGRG | 1 cut(s) | 105 |
| FaeI | CATG | 2 cut(s) | 61, 149 |
| FaiI | YATR | 7 cut(s) | 8, 30, 59, 96, 147, 168, 210 |
| FaqI | GGGAC | 1 cut(s) | 59 |
| FatI | CATG | 2 cut(s) | 57, 145 |
| FokI | GGATG | 1 cut(s) | 55 |
| FspBI | CTAG | 1 cut(s) | 128 |
| GlaI | GCGC | 1 cut(s) | 24 |
| HaeIII | GGCC | 1 cut(s) | 142 |
| HapII | CCGG | 1 cut(s) | 99 |
| HhaI | GCGC | 1 cut(s) | 25 |
| Hin1II | CATG | 2 cut(s) | 61, 149 |
| Hin6I | GCGC | 1 cut(s) | 23 |
| HinP1I | GCGC | 1 cut(s) | 23 |
| HinfI | GANTC | 3 cut(s) | 46, 175, 215 |
| HpaII | CCGG | 1 cut(s) | 99 |
| Hpy188I | TCNGA | 3 cut(s) | 138, 174, 186 |
| Hpy188III | TCNNGA | 1 cut(s) | 274 |
| HpyCH4V | TGCA | 1 cut(s) | 162 |
| HpyF3I | CTNAG | 2 cut(s) | 137, 275 |
| Hsp92II | CATG | 2 cut(s) | 61, 149 |
| HspAI | GCGC | 1 cut(s) | 23 |
| Kzo9I | GATC | 1 cut(s) | 189 |
| LpnPI | CCDG | 3 cut(s) | 112, 204, 265 |
| MaeI | CTAG | 1 cut(s) | 128 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 1 cut(s) | 191 |
| MboI | GATC | 1 cut(s) | 189 |
| MboII | GAAGA | 3 cut(s) | 193, 199, 260 |
| MflI | RGATCY | 1 cut(s) | 189 |
| MhlI | GDGCHC | 1 cut(s) | 106 |
| MlyI | GAGTC | 1 cut(s) | 55 |
| MnlI | CCTC | 6 cut(s) | 6, 101, 109, 132, 153, 239 |
| MseI | TTAA | 1 cut(s) | 83 |
| MspI | CCGG | 1 cut(s) | 99 |
| NdeII | GATC | 1 cut(s) | 189 |
| NheI | GCTAGC | 1 cut(s) | 127 |
| NlaIII | CATG | 2 cut(s) | 61, 149 |
| NlaIV | GGNNCC | 1 cut(s) | 103 |
| NmeAIII | GCCGAG | 1 cut(s) | 91 |
| NspI | RCATGY | 1 cut(s) | 61 |
| PaqCI | CACCTGC | 1 cut(s) | 270 |
| PceI | AGGCCT | 1 cut(s) | 142 |
| PfeI | GAWTC | 2 cut(s) | 175, 215 |
| PleI | GAGTC | 1 cut(s) | 54 |
| PpsI | GAGTC | 1 cut(s) | 54 |
| PspN4I | GGNNCC | 1 cut(s) | 103 |
| PsuI | RGATCY | 1 cut(s) | 189 |
| SaqAI | TTAA | 1 cut(s) | 83 |
| Sau3AI | GATC | 1 cut(s) | 189 |
| SchI | GAGTC | 1 cut(s) | 55 |
| SduI | GDGCHC | 1 cut(s) | 106 |
| SetI | ASST | 2 cut(s) | 112, 284 |
| SseBI | AGGCCT | 1 cut(s) | 142 |
| SsiI | CCGC | 1 cut(s) | 40 |
| SspMI | CTAG | 1 cut(s) | 128 |
| StuI | AGGCCT | 1 cut(s) | 142 |
| TfiI | GAWTC | 2 cut(s) | 175, 215 |
| Tru1I | TTAA | 1 cut(s) | 83 |
| Tru9I | TTAA | 1 cut(s) | 83 |
| XceI | RCATGY | 1 cut(s) | 61 |
| XspI | CTAG | 1 cut(s) | 128 |