histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0257521 |
| rosa_multiflora | Rmu_sc0004436.1_g000007 |
| rosa_rugosa | Rorug01G0074800 Rorug05G0571500 Rorug07G0261000 Rorug07G0261100 Rorug07G0261200 |
| rosa_samantha | Rh3BG366700 Rh6AG059000 Rh6BG052500 Rh6CG050200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 224 |
| AarI | CACCTGC | 1 cut(s) | 129 |
| Acc36I | ACCTGC | 1 cut(s) | 129 |
| AciI | CCGC | 1 cut(s) | 103 |
| AcsI | RAATTY | 1 cut(s) | 257 |
| AdeI | CACNNNGTG | 1 cut(s) | 14 |
| AluBI | AGCT | 2 cut(s) | 80, 318 |
| AluI | AGCT | 2 cut(s) | 80, 318 |
| ApoI | RAATTY | 1 cut(s) | 257 |
| AsuHPI | GGTGA | 1 cut(s) | 110 |
| AxyI | CCTNAGG | 1 cut(s) | 33 |
| BbsI | GAAGAC | 2 cut(s) | 60, 180 |
| BccI | CCATC | 1 cut(s) | 347 |
| BfaI | CTAG | 1 cut(s) | 297 |
| BfuAI | ACCTGC | 1 cut(s) | 129 |
| BmsI | GCATC | 2 cut(s) | 88, 291 |
| BpiI | GAAGAC | 2 cut(s) | 60, 180 |
| Bse1I | ACTGG | 1 cut(s) | 238 |
| Bse21I | CCTNAGG | 1 cut(s) | 33 |
| BseGI | GGATG | 3 cut(s) | 107, 150, 323 |
| BseMII | CTCAG | 1 cut(s) | 47 |
| BseNI | ACTGG | 1 cut(s) | 238 |
| BseRI | GAGGAG | 3 cut(s) | 18, 21, 124 |
| Bsp143I | GATC | 2 cut(s) | 115, 139 |
| BspACI | CCGC | 1 cut(s) | 103 |
| BspCNI | CTCAG | 1 cut(s) | 46 |
| BspMI | ACCTGC | 1 cut(s) | 129 |
| BspQI | GCTCTTC | 1 cut(s) | 25 |
| BsrI | ACTGG | 1 cut(s) | 238 |
| BssMI | GATC | 2 cut(s) | 115, 139 |
| Bst4CI | ACNGT | 2 cut(s) | 14, 186 |
| Bst6I | CTCTTC | 1 cut(s) | 25 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 111 |
| BstC8I | GCNNGC | 1 cut(s) | 103 |
| BstDEI | CTNAG | 2 cut(s) | 33, 61 |
| BstF5I | GGATG | 3 cut(s) | 107, 150, 323 |
| BstKTI | GATC | 2 cut(s) | 118, 142 |
| BstMBI | GATC | 2 cut(s) | 115, 139 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 111, 288 |
| BstV2I | GAAGAC | 2 cut(s) | 60, 180 |
| Bsu36I | CCTNAGG | 1 cut(s) | 33 |
| BtsCI | GGATG | 3 cut(s) | 107, 150, 323 |
| BtsI | GCAGTG | 1 cut(s) | 169 |
| BtsIMutI | CAGTG | 1 cut(s) | 169 |
| BveI | ACCTGC | 1 cut(s) | 129 |
| Cac8I | GCNNGC | 1 cut(s) | 103 |
| CviAII | CATG | 1 cut(s) | 328 |
| CviJI | RGCY | 3 cut(s) | 18, 80, 318 |
| CviKI_1 | RGCY | 3 cut(s) | 18, 80, 318 |
| DdeI | CTNAG | 2 cut(s) | 33, 61 |
| DpnI | GATC | 2 cut(s) | 117, 141 |
| DpnII | GATC | 2 cut(s) | 115, 139 |
| DraIII | CACNNNGTG | 1 cut(s) | 14 |
| Eam1104I | CTCTTC | 1 cut(s) | 25 |
| EarI | CTCTTC | 1 cut(s) | 25 |
| Eco81I | CCTNAGG | 1 cut(s) | 33 |
| FaeI | CATG | 1 cut(s) | 331 |
| FaiI | YATR | 6 cut(s) | 73, 75, 224, 267, 305, 329 |
| FatI | CATG | 1 cut(s) | 327 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FokI | GGATG | 3 cut(s) | 94, 137, 310 |
| FspBI | CTAG | 1 cut(s) | 297 |
| Hin1II | CATG | 1 cut(s) | 331 |
| HindIII | AAGCTT | 1 cut(s) | 316 |
| HinfI | GANTC | 3 cut(s) | 83, 212, 300 |
| HphI | GGTGA | 1 cut(s) | 110 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 2 cut(s) | 139, 255 |
| Hpy188III | TCNNGA | 1 cut(s) | 35 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| HpyAV | CCTTC | 1 cut(s) | 135 |
| HpyCH4III | ACNGT | 2 cut(s) | 14, 186 |
| HpyCH4V | TGCA | 1 cut(s) | 174 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 111, 288 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 61 |
| Hsp92II | CATG | 1 cut(s) | 331 |
| Kzo9I | GATC | 2 cut(s) | 115, 139 |
| LguI | GCTCTTC | 1 cut(s) | 25 |
| LmnI | GCTCC | 1 cut(s) | 77 |
| LpnPI | CCDG | 6 cut(s) | 20, 124, 134, 163, 174, 251 |
| LweI | GCATC | 2 cut(s) | 88, 291 |
| MaeI | CTAG | 1 cut(s) | 297 |
| MaeIII | GTNAC | 2 cut(s) | 180, 330 |
| MalI | GATC | 2 cut(s) | 117, 141 |
| MboI | GATC | 2 cut(s) | 115, 139 |
| MboII | GAAGA | 3 cut(s) | 12, 65, 180 |
| MfeI | CAATTG | 1 cut(s) | 45 |
| MluCI | AATT | 4 cut(s) | 45, 197, 225, 257 |
| MnlI | CCTC | 4 cut(s) | 34, 39, 42, 145 |
| MseI | TTAA | 2 cut(s) | 275, 314 |
| MunI | CAATTG | 1 cut(s) | 45 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 111, 288 |
| NdeII | GATC | 2 cut(s) | 115, 139 |
| NlaIII | CATG | 1 cut(s) | 331 |
| NmuCI | GTSAC | 1 cut(s) | 330 |
| PaqCI | CACCTGC | 1 cut(s) | 129 |
| PciSI | GCTCTTC | 1 cut(s) | 25 |
| PfeI | GAWTC | 3 cut(s) | 83, 212, 300 |
| PsiI | TTATAA | 1 cut(s) | 224 |
| SapI | GCTCTTC | 1 cut(s) | 25 |
| SaqAI | TTAA | 2 cut(s) | 275, 314 |
| Sau3AI | GATC | 2 cut(s) | 115, 139 |
| SetI | ASST | 4 cut(s) | 82, 123, 182, 320 |
| SfaNI | GCATC | 2 cut(s) | 88, 291 |
| Sse9I | AATT | 4 cut(s) | 45, 197, 225, 257 |
| SsiI | CCGC | 1 cut(s) | 103 |
| SspMI | CTAG | 1 cut(s) | 297 |
| TaaI | ACNGT | 2 cut(s) | 14, 186 |
| TaqI | TCGA | 1 cut(s) | 96 |
| TasI | AATT | 4 cut(s) | 45, 197, 225, 257 |
| TfiI | GAWTC | 3 cut(s) | 83, 212, 300 |
| Tru1I | TTAA | 2 cut(s) | 275, 314 |
| Tru9I | TTAA | 2 cut(s) | 275, 314 |
| TscAI | CASTG | 1 cut(s) | 176 |
| TseFI | GTSAC | 1 cut(s) | 330 |
| Tsp45I | GTSAC | 1 cut(s) | 330 |
| TspDTI | ATGAA | 2 cut(s) | 292, 312 |
| TspRI | CASTG | 1 cut(s) | 176 |
| XapI | RAATTY | 1 cut(s) | 257 |
| XspI | CTAG | 1 cut(s) | 297 |