Rh3BG366700

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018202
Physical Location & Seq
Forward (+)
45475872 .. 45501451
25580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG366700.1

Sequence Viewer

Length: 429 bp
ATGTCAAAGAAGGAAAACCCAATTGTAGAAGACGACTTACACTTGTTATATGGAGCTGAATCGGGTTGGGTCGATGCCCGCACATCCTGCGATCACCTGCCTTCTCTCTCCTCCGATCTTGTTCACATCCCCACCCCTGATACTCACTGCAACAGGTTACTGTCTTCTCAACAATTCTCTATTTGGCTTAGAGTTGATGGAGTGCTTATGAGATTAAGGGATACCCGTATGCACTGTGCTTTTGGAGATAATGTAAATCCCATTATTCTTCGAGAGAGCTGCTGGAGAGAAGCTACATTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGAAGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAGCAAGACCCAAAAGCTAAAGAATGAAATGCAGCCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

142

Amino Acids

16.04

Weight (kDa)

6.18

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 61 - 103 6.4e-08 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 105
Acc36I ACCTGC 1 cut(s) 105
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 351
AgsI TTSAA 1 cut(s) 302
AluBI AGCT 6 cut(s) 56, 279, 293, 305, 335, 403
AluI AGCT 6 cut(s) 56, 279, 293, 305, 335, 403
AlwI GGATC 1 cut(s) 344
ApeKI GCWGC 5 cut(s) 279, 311, 335, 338, 418
AsuHPI GGTGA 1 cut(s) 86
BarI GAAGNNNNNNTAC 2 cut(s) 21, 53
BbsI GAAGAC 2 cut(s) 36, 156
BbvI GCAGC 4 cut(s) 266, 298, 322, 325
BccI CCATC 1 cut(s) 191
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciVI GTATCC 2 cut(s) 214, 314
BfuAI ACCTGC 1 cut(s) 105
BfuI GTATCC 2 cut(s) 214, 314
BisI GCNGC 5 cut(s) 280, 312, 336, 339, 419
BlsI GCNGC 5 cut(s) 281, 313, 337, 340, 420
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 36, 156
BpmI CTGGAG 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
BseGI GGATG 2 cut(s) 83, 126
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 4 cut(s) 266, 298, 322, 325
Bsp143I GATC 3 cut(s) 91, 115, 349
BspACI CCGC 1 cut(s) 79
BspHI TCATGA 1 cut(s) 384
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 344
BssMI GATC 3 cut(s) 91, 115, 349
Bst4CI ACNGT 2 cut(s) 162, 236
BstAPI GCANNNNNTGC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 83, 126
BstKTI GATC 3 cut(s) 94, 118, 352
BstMBI GATC 3 cut(s) 91, 115, 349
BstMWI GCNNNNNNNGC 2 cut(s) 87, 311
BstV1I GCAGC 4 cut(s) 266, 298, 322, 325
BstV2I GAAGAC 2 cut(s) 36, 156
BsuI GTATCC 2 cut(s) 214, 314
BtsCI GGATG 2 cut(s) 83, 126
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 145, 232
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 79
CciI TCATGA 1 cut(s) 384
CviAII CATG 1 cut(s) 385
DdeI CTNAG 1 cut(s) 188
DpnI GATC 3 cut(s) 93, 117, 351
DpnII GATC 3 cut(s) 91, 115, 349
Eco57I CTGAAG 1 cut(s) 351
FaeI CATG 1 cut(s) 388
FaiI YATR 5 cut(s) 49, 51, 209, 230, 386
FatI CATG 1 cut(s) 384
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 5 cut(s) 280, 312, 336, 339, 419
FokI GGATG 2 cut(s) 70, 113
Fsp4HI GCNGC 5 cut(s) 280, 312, 336, 339, 419
GluI GCNGC 5 cut(s) 280, 312, 336, 339, 419
GsuI CTGGAG 1 cut(s) 304
Hin1II CATG 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 115, 331
Hpy188III TCNNGA 2 cut(s) 272, 385
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 4, 111, 336
HpyCH4III ACNGT 2 cut(s) 162, 236
HpyCH4V TGCA 4 cut(s) 150, 232, 314, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 311
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 1 cut(s) 388
Kzo9I GATC 3 cut(s) 91, 115, 349
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 6 cut(s) 100, 110, 139, 150, 268, 390
Lsp1109I GCAGC 4 cut(s) 266, 298, 322, 325
LweI GCATC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 156
MalI GATC 3 cut(s) 93, 117, 351
MboI GATC 3 cut(s) 91, 115, 349
MboII GAAGA 3 cut(s) 41, 156, 260
MfeI CAATTG 1 cut(s) 21
MluCI AATT 2 cut(s) 21, 173
MnlI CCTC 1 cut(s) 121
MseI TTAA 1 cut(s) 215
MunI CAATTG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 87, 311
NdeII GATC 3 cut(s) 91, 115, 349
NlaIII CATG 1 cut(s) 388
PagI TCATGA 1 cut(s) 384
PaqCI CACCTGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 5 cut(s) 281, 313, 337, 340, 420
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 5 cut(s) 280, 312, 336, 339, 419
Sau3AI GATC 3 cut(s) 91, 115, 349
SetI ASST 8 cut(s) 58, 99, 158, 281, 295, 307, 337, 405
SfaNI GCATC 1 cut(s) 64
Sse9I AATT 2 cut(s) 21, 173
SsiI CCGC 1 cut(s) 79
TaaI ACNGT 2 cut(s) 162, 236
TaqI TCGA 2 cut(s) 72, 271
TasI AATT 2 cut(s) 21, 173
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 2 cut(s) 152, 239
TseI GCWGC 5 cut(s) 279, 311, 335, 338, 418
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 2 cut(s) 152, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.