TIP41-like family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0257521 |
| rosa_multiflora | Rmu_sc0004436.1_g000007 |
| rosa_rugosa | Rorug01G0074800 Rorug05G0571500 Rorug07G0261000 Rorug07G0261100 Rorug07G0261200 |
| rosa_samantha | Rh3BG366700 Rh6AG059000 Rh6BG052500 Rh6CG050200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 9 |
| AclWI | GGATC | 1 cut(s) | 194 |
| AcuI | CTGAAG | 1 cut(s) | 201 |
| AflIII | ACRYGT | 1 cut(s) | 270 |
| AgsI | TTSAA | 2 cut(s) | 122, 152 |
| AluBI | AGCT | 5 cut(s) | 129, 143, 155, 185, 253 |
| AluI | AGCT | 5 cut(s) | 129, 143, 155, 185, 253 |
| AlwI | GGATC | 1 cut(s) | 194 |
| ApeKI | GCWGC | 4 cut(s) | 129, 161, 185, 188 |
| BbvI | GCAGC | 4 cut(s) | 116, 148, 172, 175 |
| BccI | CCATC | 1 cut(s) | 41 |
| BciVI | GTATCC | 2 cut(s) | 64, 164 |
| BfaI | CTAG | 1 cut(s) | 264 |
| BfuI | GTATCC | 2 cut(s) | 64, 164 |
| BisI | GCNGC | 4 cut(s) | 130, 162, 186, 189 |
| BlsI | GCNGC | 4 cut(s) | 131, 163, 187, 190 |
| BpmI | CTGGAG | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 87, 117 |
| BseXI | GCAGC | 4 cut(s) | 116, 148, 172, 175 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspACI | CCGC | 1 cut(s) | 9 |
| BspHI | TCATGA | 1 cut(s) | 234 |
| BspPI | GGATC | 1 cut(s) | 194 |
| BssMI | GATC | 1 cut(s) | 199 |
| Bst4CI | ACNGT | 1 cut(s) | 86 |
| BstDEI | CTNAG | 1 cut(s) | 38 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 34, 161 |
| BstNSI | RCATGY | 1 cut(s) | 274 |
| BstV1I | GCAGC | 4 cut(s) | 116, 148, 172, 175 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 12 |
| BsuI | GTATCC | 2 cut(s) | 64, 164 |
| BtsIMutI | CAGTG | 1 cut(s) | 82 |
| CciI | TCATGA | 1 cut(s) | 234 |
| CviAII | CATG | 2 cut(s) | 235, 271 |
| CviJI | RGCY | 9 cut(s) | 37, 129, 143, 155, 161, 185, 216, 223, 253 |
| CviKI_1 | RGCY | 9 cut(s) | 37, 129, 143, 155, 161, 185, 216, 223, 253 |
| DdeI | CTNAG | 1 cut(s) | 38 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| Eco57I | CTGAAG | 1 cut(s) | 201 |
| FaeI | CATG | 2 cut(s) | 238, 274 |
| FaiI | YATR | 4 cut(s) | 59, 80, 236, 272 |
| FatI | CATG | 2 cut(s) | 234, 270 |
| Fnu4HI | GCNGC | 4 cut(s) | 130, 162, 186, 189 |
| Fsp4HI | GCNGC | 4 cut(s) | 130, 162, 186, 189 |
| FspBI | CTAG | 1 cut(s) | 264 |
| GluI | GCNGC | 4 cut(s) | 130, 162, 186, 189 |
| GsuI | CTGGAG | 1 cut(s) | 154 |
| Hin1II | CATG | 2 cut(s) | 238, 274 |
| HindIII | AAGCTT | 1 cut(s) | 153 |
| Hpy188I | TCNGA | 1 cut(s) | 181 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 235 |
| HpyAV | CCTTC | 1 cut(s) | 186 |
| HpyCH4III | ACNGT | 1 cut(s) | 86 |
| HpyCH4V | TGCA | 2 cut(s) | 82, 164 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 34, 161 |
| HpyF3I | CTNAG | 1 cut(s) | 38 |
| Hsp92II | CATG | 2 cut(s) | 238, 274 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LpnPI | CCDG | 2 cut(s) | 118, 240 |
| Lsp1109I | GCAGC | 4 cut(s) | 116, 148, 172, 175 |
| MaeI | CTAG | 1 cut(s) | 264 |
| MaeIII | GTNAC | 1 cut(s) | 266 |
| MalI | GATC | 1 cut(s) | 201 |
| MboI | GATC | 1 cut(s) | 199 |
| MboII | GAAGA | 2 cut(s) | 11, 110 |
| MseI | TTAA | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 34, 161 |
| NdeII | GATC | 1 cut(s) | 199 |
| NlaIII | CATG | 2 cut(s) | 238, 274 |
| NspI | RCATGY | 1 cut(s) | 274 |
| PagI | TCATGA | 1 cut(s) | 234 |
| PciI | ACATGT | 1 cut(s) | 270 |
| PkrI | GCNGC | 4 cut(s) | 131, 163, 187, 190 |
| PscI | ACATGT | 1 cut(s) | 270 |
| SaqAI | TTAA | 1 cut(s) | 65 |
| SatI | GCNGC | 4 cut(s) | 130, 162, 186, 189 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| SetI | ASST | 6 cut(s) | 131, 145, 157, 187, 255, 261 |
| SsiI | CCGC | 1 cut(s) | 9 |
| SspMI | CTAG | 1 cut(s) | 264 |
| TaaI | ACNGT | 1 cut(s) | 86 |
| Tru1I | TTAA | 1 cut(s) | 65 |
| Tru9I | TTAA | 1 cut(s) | 65 |
| TscAI | CASTG | 1 cut(s) | 89 |
| TseI | GCWGC | 4 cut(s) | 129, 161, 185, 188 |
| TspRI | CASTG | 1 cut(s) | 89 |
| XceI | RCATGY | 1 cut(s) | 274 |
| XspI | CTAG | 1 cut(s) | 264 |