RchiOBHm_Chr6g0262861

Thioredoxin-like 1-2, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017821
Physical Location & Seq
Forward (+)
17628865 .. 17630405
1541 bp
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UTR
Exon/CDS
Intron
PRQ23574

Sequence Viewer

Length: 273 bp
ATGCATGAAAAATATGACTGGAAGAGTGTGGAGAATTTTGGAGGTGGTGGTGAATACGTACCCCAGATTTGTCAGCTGGCTGAACAGATTCCAGATGCAATTTTTCTTTCGGTTAACTTTGAAGAGCTCAACGCTATGTGCCATGGTCTCCACATTCATGTGATACCATTCTTTAGGTTTTATAGAGGTGCAGAAGGGCGAGTATGTAGCTTCGGCTGCACCATTGCCGCTAAATTCAAAGATGCATTAGCTAAATATGGGACTGAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

90

Amino Acids

10.11

Weight (kDa)

5.72

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 228
AcsI RAATTY 2 cut(s) 34, 233
AfaI GTAC 1 cut(s) 60
AgsI TTSAA 2 cut(s) 122, 238
AluBI AGCT 4 cut(s) 76, 127, 210, 251
AluI AGCT 4 cut(s) 76, 127, 210, 251
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 2 cut(s) 34, 233
Asp700I GAANNNNTTC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 152
BisI GCNGC 2 cut(s) 217, 228
BlsI GCNGC 2 cut(s) 218, 229
BmsI GCATC 2 cut(s) 85, 232
BsaAI YACGTR 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 203
BsgI GTGCAG 2 cut(s) 202, 210
BsiHKAI GWGCWC 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 129
Bsp19I CCATGG 1 cut(s) 142
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 17, 117
BstBAI YACGTR 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstSNI TACGTA 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 5, 143, 158
CviJI RGCY 6 cut(s) 76, 80, 127, 210, 216, 251
CviKI_1 RGCY 6 cut(s) 76, 80, 127, 210, 216, 251
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 17, 117
EarI CTCTTC 2 cut(s) 17, 117
Ecl136II GAGCTC 1 cut(s) 127
Eco105I TACGTA 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 2 cut(s) 6, 247
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 3 cut(s) 8, 146, 161
FaiI YATR 8 cut(s) 6, 15, 137, 144, 159, 183, 205, 258
FatI CATG 3 cut(s) 4, 142, 157
Fnu4HI GCNGC 2 cut(s) 217, 228
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 217, 228
GluI GCNGC 2 cut(s) 217, 228
Hin1II CATG 3 cut(s) 8, 146, 161
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 88
HpaI GTTAAC 1 cut(s) 115
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 5 cut(s) 4, 98, 191, 219, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 3 cut(s) 8, 146, 161
KspAI GTTAAC 1 cut(s) 115
LguI GCTCTTC 1 cut(s) 117
LpnPI CCDG 4 cut(s) 4, 62, 77, 105
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 2 cut(s) 85, 232
MaeII ACGT 1 cut(s) 57
MboII GAAGA 2 cut(s) 34, 134
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 3 cut(s) 34, 99, 233
MnlI CCTC 3 cut(s) 35, 179, 259
Mph1103I ATGCAT 2 cut(s) 6, 247
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 2 cut(s) 156, 158
MspA1I CMGCKG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 216
NcoI CCATGG 1 cut(s) 142
NlaIII CATG 3 cut(s) 8, 146, 161
NsiI ATGCAT 2 cut(s) 6, 247
PciSI GCTCTTC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 218, 229
Ppu21I YACGTR 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 2 cut(s) 156, 158
SacI GAGCTC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 217, 228
SduI GDGCHC 1 cut(s) 129
SetI ASST 8 cut(s) 46, 60, 78, 129, 179, 190, 212, 253
SfaNI GCATC 2 cut(s) 85, 232
SgeI CNNG 8 cut(s) 17, 31, 76, 89, 104, 155, 170, 212
SmiMI CAYNNNNRTG 2 cut(s) 156, 158
SnaBI TACGTA 1 cut(s) 58
Sse9I AATT 3 cut(s) 34, 99, 233
SsiI CCGC 1 cut(s) 228
SstI GAGCTC 1 cut(s) 129
StyI CCWWGG 1 cut(s) 142
TaiI ACGT 1 cut(s) 60
TasI AATT 3 cut(s) 34, 99, 233
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 21, 146
XapI RAATTY 2 cut(s) 34, 233
XmnI GAANNNNTTC 1 cut(s) 87
Zsp2I ATGCAT 2 cut(s) 6, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.