Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003487.1

Orthogroup ID

OG0017821

Physical Location & Seq

Genomic Coordinates Forward (+)

2805 .. 5382

Gene Structure 2578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003487.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggtggaagccattgatgcagctgcaagaacaaggatggagatgaggctgaaatcttatgccagtcaccaactgaagtttctgaatgggcagaacacaaatcggcctccaaagtcgtcggaattgtcttctaggcctgtagaggaggacaagaatcactcatcaaggcaaacattagatttaatccaacatttctggtttattggaatatccccacaatccaactctcttccgactcttcgtgtcactatttcgttgagccatgctttgatttggtgtaaaagaaagcatctttcagtcatgcagagacaaagggaatgccctgagaaatctaaggaagctgttgcatcactaatggttactgcagctagattttctgatttatcagagttttgtgacattacgccactatttcaagagagttgcaatttcgcagggcaagccatcaaatttgtagagctctccatcccaagggactttcgaaatgattgggatccgatccaacacatgatagctgaaggcctggcaaggtctggatcaaaagaagcaaagttagtgggagaagacattgctgtaaggtggatcagaaccaattataaagcctacaagaaaacaggtgtcatgcatgaaaaatatgatgtggaagggtatggagaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004555 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005993 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015927 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044464 GO:0046352 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalase

Protein Analysis

220

Amino Acids

25.21

Weight (kDa)

8.86

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017821)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0261321 RchiOBHm_Chr6g0262861
rosa_multiflora	Rmu_sc0003237.1_g000009 Rmu_sc0003487.1_g000002 Rmu_sc0008322.1_g000017 Rmu_sc0036345.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434120 Rroxscaffold_7G00204910
rosa_rugosa	Rorug06G0000200
rosa_samantha	Rh6AG120500 Rh6DG101500
rosa_wichuraiana	Rw2G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AclWI	GGATC	5 cut(s)	488, 493, 501, 544, 590
AcsI	RAATTY	2 cut(s)	449, 656
AcuI	CTGAAG	2 cut(s)	95, 537
AfiI	CCNNNNNNNGG	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	522
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	5 cut(s)	23, 341, 368, 460, 515
AluI	AGCT	5 cut(s)	23, 341, 368, 460, 515
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	5 cut(s)	488, 493, 501, 544, 590
AoxI	GGCC	3 cut(s)	104, 134, 520
ApeKI	GCWGC	3 cut(s)	20, 23, 365
ApoI	RAATTY	2 cut(s)	449, 656
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	2 cut(s)	120, 570
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	10, 32, 377
BccI	CCATC	3 cut(s)	31, 452, 473
BciT130I	CCWGG	1 cut(s)	524
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	132, 369
BfmI	CTRYAG	2 cut(s)	138, 363
BisI	GCNGC	3 cut(s)	21, 24, 366
BlsI	GCNGC	3 cut(s)	22, 25, 367
Bme1390I	CCNGG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	3 cut(s)	7, 298, 356
BpiI	GAAGAC	2 cut(s)	120, 570
Bpu14I	TTCGAA	1 cut(s)	481
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	2 cut(s)	42, 465
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	10, 32, 377
BshFI	GGCC	3 cut(s)	106, 136, 522
BsiHKAI	GWGCWC	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	3 cut(s)	106, 136, 522
Bsp119I	TTCGAA	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	493, 498, 536, 582
BspANI	GGCC	3 cut(s)	106, 136, 522
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	495
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	5 cut(s)	488, 493, 501, 544, 590
BspT104I	TTCGAA	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	4 cut(s)	493, 498, 536, 582
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	524
Bst6I	CTCTTC	2 cut(s)	234, 243
BstBI	TTCGAA	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	324, 333
BstF5I	GGATG	2 cut(s)	42, 465
BstKTI	GATC	4 cut(s)	496, 501, 539, 585
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	4 cut(s)	493, 498, 536, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 440
BstNI	CCWGG	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	2 cut(s)	138, 363
BstV1I	GCAGC	3 cut(s)	10, 32, 377
BstV2I	GAAGAC	2 cut(s)	120, 570
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	3 cut(s)	106, 136, 522
BtsCI	GGATG	2 cut(s)	42, 465
Cac8I	GCNNGC	1 cut(s)	441
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	5 cut(s)	263, 301, 508, 622, 626
DdeI	CTNAG	2 cut(s)	324, 333
DpnI	GATC	4 cut(s)	495, 500, 538, 584
DpnII	GATC	4 cut(s)	493, 498, 536, 582
Eam1104I	CTCTTC	2 cut(s)	234, 243
EarI	CTCTTC	2 cut(s)	234, 243
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	470
Eco147I	AGGCCT	2 cut(s)	136, 522
Eco24I	GRGCYC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	95, 537
EcoICRI	GAGCTC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	5 cut(s)	266, 304, 511, 625, 629
FaiI	YATR	9 cut(s)	60, 264, 302, 509, 597, 623, 627, 636, 651
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	5 cut(s)	262, 300, 507, 621, 625
Fnu4HI	GCNGC	3 cut(s)	21, 24, 366
FokI	GGATG	2 cut(s)	49, 452
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	21, 24, 366
FspBI	CTAG	2 cut(s)	132, 369
GluI	GCNGC	3 cut(s)	21, 24, 366
HaeIII	GGCC	3 cut(s)	106, 136, 522
Hin1II	CATG	5 cut(s)	266, 304, 511, 625, 629
HinfI	GANTC	2 cut(s)	154, 235
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	7 cut(s)	84, 121, 234, 379, 388, 498, 587
Hpy188III	TCNNGA	2 cut(s)	416, 534
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	512, 638
HpyCH4V	TGCA	7 cut(s)	20, 26, 304, 347, 365, 426, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 440
HpyF3I	CTNAG	2 cut(s)	324, 333
Hsp92II	CATG	5 cut(s)	266, 304, 511, 625, 629
Kzo9I	GATC	4 cut(s)	493, 498, 536, 582
LpnPI	CCDG	9 cut(s)	76, 150, 181, 336, 420, 509, 519, 536, 600
Lsp1109I	GCAGC	3 cut(s)	10, 32, 377
LweI	GCATC	3 cut(s)	7, 298, 356
MaeI	CTAG	2 cut(s)	132, 369
MaeIII	GTNAC	4 cut(s)	65, 244, 358, 395
MalI	GATC	4 cut(s)	495, 500, 538, 584
MboI	GATC	4 cut(s)	493, 498, 536, 582
MboII	GAAGA	4 cut(s)	120, 221, 230, 575
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	5 cut(s)	122, 427, 449, 592, 656
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	5 cut(s)	99, 211, 246, 257, 526
MnlI	CCTC	4 cut(s)	39, 117, 136, 139
Mph1103I	ATGCAT	1 cut(s)	627
MseI	TTAA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	17, 440
NdeII	GATC	4 cut(s)	493, 498, 536, 582
NlaIII	CATG	5 cut(s)	266, 304, 511, 625, 629
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	3 cut(s)	65, 244, 395
NsiI	ATGCAT	1 cut(s)	627
NspV	TTCGAA	1 cut(s)	481
PceI	AGGCCT	2 cut(s)	136, 522
PctI	GAATGC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	3 cut(s)	22, 25, 367
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PsiI	TTATAA	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	495
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	3 cut(s)	21, 24, 366
Sau3AI	GATC	4 cut(s)	493, 498, 536, 582
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	8 cut(s)	25, 343, 370, 462, 517, 533, 581, 619
SfaNI	GCATC	3 cut(s)	7, 298, 356
SfcI	CTRYAG	2 cut(s)	138, 363
SfuI	TTCGAA	1 cut(s)	481
Sse9I	AATT	5 cut(s)	122, 427, 449, 592, 656
SseBI	AGGCCT	2 cut(s)	136, 522
SspMI	CTAG	2 cut(s)	132, 369
SstI	GAGCTC	1 cut(s)	462
StuI	AGGCCT	2 cut(s)	136, 522
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	470
TaqI	TCGA	1 cut(s)	481
TasI	AATT	5 cut(s)	122, 427, 449, 592, 656
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	3 cut(s)	65, 244, 395
TseI	GCWGC	3 cut(s)	20, 23, 365
Tsp45I	GTSAC	3 cut(s)	65, 244, 395
TspDTI	ATGAA	1 cut(s)	642
XapI	RAATTY	2 cut(s)	449, 656
XspI	CTAG	2 cut(s)	132, 369
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.