Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008322.1

Orthogroup ID

OG0017821

Physical Location & Seq

Genomic Coordinates Forward (+)

94800 .. 96314

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008322.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgtggatcaaaagcttcaaagcctcccacattggagaagaaggttcagttgacatagcattggagttttcaataaagtggaactttaaggcctttgaacaaaggatgtctaaacctcctgcatttatacagatttgtcagctggccgaacagattccagatgcaatttttcttaaggttaactatgaagagatcaagactatgtgccatggtcttcacattcatgtgataccattctttgggttttatagaggcgcagaagggcgagtatgtagcttcagctgcaccattgccactatcaaggaattcaaagatgcattagctaaatatgggactgagggttgtagtcttggctcggcaaaggggattagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

124

Amino Acids

13.96

Weight (kDa)

8.28

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017821)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0261321 RchiOBHm_Chr6g0262861
rosa_multiflora	Rmu_sc0003237.1_g000009 Rmu_sc0003487.1_g000002 Rmu_sc0008322.1_g000017 Rmu_sc0036345.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434120 Rroxscaffold_7G00204910
rosa_rugosa	Rorug06G0000200
rosa_samantha	Rh6AG120500 Rh6DG101500
rosa_wichuraiana	Rw2G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	239
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	19, 72, 98, 310
AluBI	AGCT	5 cut(s)	15, 142, 276, 282, 323
AluI	AGCT	5 cut(s)	15, 142, 276, 282, 323
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	90, 144
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	269
BfrI	CTTAAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
BmsI	GCATC	2 cut(s)	151, 304
BpiI	GAAGAC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	92, 146
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	92, 146
Bsp143I	GATC	2 cut(s)	6, 192
Bsp19I	CCATGG	1 cut(s)	208
BspANI	GGCC	2 cut(s)	92, 146
BspCNI	CTCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	6, 192
BssT1I	CCWWGG	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	2 cut(s)	9, 195
BstMBI	GATC	2 cut(s)	6, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	92, 146
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	1 cut(s)	257
CviAII	CATG	2 cut(s)	209, 224
CviJI	RGCY	9 cut(s)	15, 23, 92, 142, 146, 276, 282, 323, 354
CviKI_1	RGCY	9 cut(s)	15, 23, 92, 142, 146, 276, 282, 323, 354
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	8, 194
DpnII	GATC	2 cut(s)	6, 192
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	212, 227
FaiI	YATR	9 cut(s)	56, 128, 186, 203, 210, 225, 249, 271, 330
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	2 cut(s)	208, 223
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	283
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	283
HaeIII	GGCC	2 cut(s)	92, 146
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	2 cut(s)	212, 227
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HincII	GTYRAC	2 cut(s)	52, 181
HindII	GTYRAC	2 cut(s)	52, 181
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	1 cut(s)	154
HpaI	GTTAAC	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	52, 181
Hpy188III	TCNNGA	2 cut(s)	158, 196
Hpy8I	GTNNAC	2 cut(s)	52, 181
HpyAV	CCTTC	2 cut(s)	35, 254
HpyCH4V	TGCA	4 cut(s)	122, 164, 285, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	212, 227
HspAI	GCGC	1 cut(s)	255
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	6, 192
LpnPI	CCDG	3 cut(s)	128, 132, 171
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	2 cut(s)	151, 304
MalI	GATC	2 cut(s)	8, 194
MboI	GATC	2 cut(s)	6, 192
MboII	GAAGA	3 cut(s)	50, 200, 206
MluCI	AATT	2 cut(s)	165, 305
MnlI	CCTC	4 cut(s)	34, 126, 245, 331
Mph1103I	ATGCAT	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	3 cut(s)	87, 174, 180
MslI	CAYNNNNRTG	2 cut(s)	222, 224
MspA1I	CMGCKG	2 cut(s)	142, 282
MspCI	CTTAAG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	6, 192
NlaIII	CATG	2 cut(s)	212, 227
NmeAIII	GCCGAG	1 cut(s)	335
NsiI	ATGCAT	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	284
PvuII	CAGCTG	2 cut(s)	142, 282
RseI	CAYNNNNRTG	2 cut(s)	222, 224
SaqAI	TTAA	3 cut(s)	87, 174, 180
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	2 cut(s)	6, 192
SetI	ASST	8 cut(s)	17, 46, 118, 144, 180, 278, 284, 325
SfaNI	GCATC	2 cut(s)	151, 304
SmiMI	CAYNNNNRTG	2 cut(s)	222, 224
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	165, 305
SseBI	AGGCCT	1 cut(s)	92
StuI	AGGCCT	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	208
TasI	AATT	2 cut(s)	165, 305
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	87, 174, 180
Tru9I	TTAA	3 cut(s)	87, 174, 180
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	201, 212
Van91I	CCANNNNNTGG	1 cut(s)	239
Vha464I	CTTAAG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.