Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017821

Physical Location & Seq

Genomic Coordinates Reverse (-)

54397010 .. 54404127

Gene Structure 7118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCAAAGTTCGGTGAATTTCTTATTTGGGAAAAAAGTATTGCTCTTTCGAATTATAAGGCAGCTGCAATTTCGCAGGGCAAGCCATCAAATTATGTAGAGCTCTCCATCCCAAGGGACTTTCCAAATGATTGGGCTCCAATCCAACACATGATAGCTGAAGGCCTGGCAAGGTCTGGATCAAAAGAAGCAAAGTTAGTGCGAGAAGACATTGCTGTAAGATGGATCAGAACCAATTATAAAGCCTACAAGAAAACAGATGTCATTCATGAAAAATATGACTGGAAGAGTGTGGAGAATTTTGGAGGTGGTGGTGAATACGTACCCCAGATTTGTCAGCTGGCTGAACAGATTCCAGATGCAATTTTTCTTAAGGTTAACTATGAAGAGCTCAACGCTATGTGCCATGGTCTCCACATTCATGTGATACCATTCTTTAGGTTTTATAGAGGCGCAGAAGGGCGAGTATGTAGCTTCAGCTGCACCATTGCCGCTGTAAGTATTGCAATTCCTGTTGATGTTGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004555 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005993 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015927 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044464 GO:0046352 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalase

Protein Analysis

176

Amino Acids

19.86

Weight (kDa)

6.96

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalase	PF01204	39 - 110	7.2e-19	Trehalase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017821)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0261321 RchiOBHm_Chr6g0262861
rosa_multiflora	Rmu_sc0003237.1_g000009 Rmu_sc0003487.1_g000002 Rmu_sc0008322.1_g000017 Rmu_sc0036345.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434120 Rroxscaffold_7G00204910
rosa_rugosa	Rorug06G0000200
rosa_samantha	Rh6AG120500 Rh6DG101500
rosa_wichuraiana	Rw2G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	57, 240
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	2 cut(s)	187, 233
AcsI	RAATTY	2 cut(s)	17, 298
AcuI	CTGAAG	2 cut(s)	180, 460
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflII	CTTAAG	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	7 cut(s)	65, 103, 158, 340, 391, 474, 480
AluI	AGCT	7 cut(s)	65, 103, 158, 340, 391, 474, 480
Alw21I	GWGCWC	2 cut(s)	105, 393
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	187, 233
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	3 cut(s)	62, 65, 480
ApoI	RAATTY	2 cut(s)	17, 298
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	26, 326
AsuII	TTCGAA	1 cut(s)	50
BanII	GRGCYC	3 cut(s)	105, 139, 393
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	105, 393
BbvI	GCAGC	3 cut(s)	52, 74, 467
BccI	CCATC	3 cut(s)	94, 116, 216
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	4 cut(s)	63, 66, 481, 492
BlsI	GCNGC	4 cut(s)	64, 67, 482, 493
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	113, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	2 cut(s)	210, 486
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	113, 406
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	2 cut(s)	210, 486
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	3 cut(s)	52, 74, 467
BsgI	GTGCAG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	105, 393
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	105, 139, 393
Bsp143I	GATC	2 cut(s)	179, 225
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	187, 233
BspQI	GCTCTTC	1 cut(s)	381
BspT104I	TTCGAA	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	210, 486
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	113, 406
BssMI	GATC	2 cut(s)	179, 225
BssT1I	CCWWGG	2 cut(s)	113, 406
Bst2UI	CCWGG	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	281, 381
BstAFI	CTTAAG	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	83, 342
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	2 cut(s)	182, 228
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	179, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 480
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSNI	TACGTA	1 cut(s)	322
BstV1I	GCAGC	3 cut(s)	52, 74, 467
BstV2I	GAAGAC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	83, 342
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	151, 269, 407, 422
CviQI	GTAC	1 cut(s)	323
DpnI	GATC	2 cut(s)	181, 227
DpnII	GATC	2 cut(s)	179, 225
Eam1104I	CTCTTC	2 cut(s)	281, 381
EarI	CTCTTC	2 cut(s)	281, 381
Ecl136II	GAGCTC	2 cut(s)	103, 391
Eco105I	TACGTA	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	113, 406
Eco147I	AGGCCT	1 cut(s)	165
Eco24I	GRGCYC	3 cut(s)	105, 139, 393
Eco31I	GGTCTC	1 cut(s)	416
Eco53kI	GAGCTC	2 cut(s)	103, 391
Eco57I	CTGAAG	2 cut(s)	180, 460
EcoICRI	GAGCTC	2 cut(s)	103, 391
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	113, 406
EcoT38I	GRGCYC	3 cut(s)	105, 139, 393
ErhI	CCWWGG	2 cut(s)	113, 406
FaeI	CATG	4 cut(s)	154, 272, 410, 425
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	4 cut(s)	150, 268, 406, 421
Fnu4HI	GCNGC	4 cut(s)	63, 66, 481, 492
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	3 cut(s)	105, 139, 393
Fsp4HI	GCNGC	4 cut(s)	63, 66, 481, 492
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	4 cut(s)	63, 66, 481, 492
HaeIII	GGCC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	4 cut(s)	154, 272, 410, 425
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	352
HpaI	GTTAAC	1 cut(s)	379
HphI	GGTGA	2 cut(s)	26, 326
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	3 cut(s)	177, 269, 356
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	155, 452
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	68, 362, 483, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 480
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	154, 272, 410, 425
HspAI	GCGC	1 cut(s)	453
KspAI	GTTAAC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	179, 225
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	9 cut(s)	62, 152, 162, 179, 268, 326, 341, 369, 525
Lsp1109I	GCAGC	3 cut(s)	52, 74, 467
LweI	GCATC	1 cut(s)	349
MaeII	ACGT	1 cut(s)	321
MalI	GATC	2 cut(s)	181, 227
MboI	GATC	2 cut(s)	179, 225
MboII	GAAGA	3 cut(s)	218, 298, 398
MhlI	GDGCHC	3 cut(s)	105, 139, 393
MluCI	AATT	8 cut(s)	17, 52, 69, 91, 235, 298, 363, 507
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	2 cut(s)	299, 443
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	2 cut(s)	372, 378
MslI	CAYNNNNRTG	2 cut(s)	420, 422
MspA1I	CMGCKG	4 cut(s)	65, 340, 480, 494
MspCI	CTTAAG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	82, 480
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	2 cut(s)	179, 225
NlaIII	CATG	4 cut(s)	154, 272, 410, 425
NlaIV	GGNNCC	1 cut(s)	138
NspV	TTCGAA	1 cut(s)	50
PagI	TCATGA	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	4 cut(s)	64, 67, 482, 493
Ppu21I	YACGTR	1 cut(s)	322
PsiI	TTATAA	2 cut(s)	57, 240
Psp124BI	GAGCTC	2 cut(s)	105, 393
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	138
PvuII	CAGCTG	3 cut(s)	65, 340, 480
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	420, 422
SacI	GAGCTC	2 cut(s)	105, 393
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	372, 378
SatI	GCNGC	4 cut(s)	63, 66, 481, 492
Sau3AI	GATC	2 cut(s)	179, 225
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	3 cut(s)	105, 139, 393
SfaNI	GCATC	1 cut(s)	349
SfuI	TTCGAA	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	420, 422
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SnaBI	TACGTA	1 cut(s)	322
Sse9I	AATT	8 cut(s)	17, 52, 69, 91, 235, 298, 363, 507
SseBI	AGGCCT	1 cut(s)	165
SsiI	CCGC	1 cut(s)	492
SstI	GAGCTC	2 cut(s)	105, 393
StuI	AGGCCT	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	113, 406
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	50
TasI	AATT	8 cut(s)	17, 52, 69, 91, 235, 298, 363, 507
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	372, 378
Tru9I	TTAA	2 cut(s)	372, 378
TseI	GCWGC	3 cut(s)	62, 65, 480
TspDTI	ATGAA	4 cut(s)	257, 285, 399, 410
Vha464I	CTTAAG	1 cut(s)	371
XapI	RAATTY	2 cut(s)	17, 298
XmnI	GAANNNNTTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.