Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036345.1

Orthogroup ID

OG0017821

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 746

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036345.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 227 bp

ggcaagccatcaaatttgtagagctctccatcccaagggactttcgaaatgattgggatccgatccaacacgtgatagctgaaggcctgtcaaggtctggatcaaaagaagcaaagttagtgggagaagacattgctataaggtggatcagaaccaattataaagcctacaagaaaacaggtgtcatgcatgaaaaatatgatgtggaagggtatggagaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004555 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005993 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015927 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044464 GO:0046352 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalase

Protein Analysis

74

Amino Acids

8.6

Weight (kDa)

6.94

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017821)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0261321 RchiOBHm_Chr6g0262861
rosa_multiflora	Rmu_sc0003237.1_g000009 Rmu_sc0003487.1_g000002 Rmu_sc0008322.1_g000017 Rmu_sc0036345.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434120 Rroxscaffold_7G00204910
rosa_rugosa	Rorug06G0000200
rosa_samantha	Rh6AG120500 Rh6DG101500
rosa_wichuraiana	Rw2G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AclWI	GGATC	5 cut(s)	52, 57, 65, 108, 154
AcsI	RAATTY	2 cut(s)	13, 220
AcuI	CTGAAG	1 cut(s)	101
AcvI	CACGTG	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	35
AflIII	ACRYGT	1 cut(s)	69
AluBI	AGCT	2 cut(s)	24, 79
AluI	AGCT	2 cut(s)	24, 79
Alw21I	GWGCWC	1 cut(s)	26
AlwI	GGATC	5 cut(s)	52, 57, 65, 108, 154
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	13, 220
AsuII	TTCGAA	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	26
BbrPI	CACGTG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	26
BccI	CCATC	2 cut(s)	16, 37
BmiI	GGNNCC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	131
Bse8I	GATNNNNATC	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	57, 62, 100, 146
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	5 cut(s)	52, 57, 65, 108, 154
BspT104I	TTCGAA	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	4 cut(s)	57, 62, 100, 146
BssT1I	CCWWGG	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	4 cut(s)	60, 65, 103, 149
BstMBI	GATC	4 cut(s)	57, 62, 100, 146
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	101, 136
CviAII	CATG	2 cut(s)	186, 190
CviJI	RGCY	5 cut(s)	7, 24, 79, 86, 166
CviKI_1	RGCY	5 cut(s)	7, 24, 79, 86, 166
DpnI	GATC	4 cut(s)	59, 64, 102, 148
DpnII	GATC	4 cut(s)	57, 62, 100, 146
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	34
Eco147I	AGGCCT	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	2 cut(s)	189, 193
FaiI	YATR	6 cut(s)	139, 161, 187, 191, 200, 215
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	2 cut(s)	185, 189
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	189, 193
Hpy188I	TCNGA	2 cut(s)	62, 151
Hpy188III	TCNNGA	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	76, 202
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	189, 193
Kzo9I	GATC	4 cut(s)	57, 62, 100, 146
LpnPI	CCDG	3 cut(s)	83, 100, 164
MaeII	ACGT	1 cut(s)	71
MalI	GATC	4 cut(s)	59, 64, 102, 148
MboI	GATC	4 cut(s)	57, 62, 100, 146
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	3 cut(s)	13, 156, 220
MmeI	TCCRAC	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	191
NdeII	GATC	4 cut(s)	57, 62, 100, 146
NlaIII	CATG	2 cut(s)	189, 193
NlaIV	GGNNCC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	86
PmaCI	CACGTG	1 cut(s)	72
PmlI	CACGTG	1 cut(s)	72
Ppu21I	YACGTR	1 cut(s)	72
PsiI	TTATAA	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	26
PspCI	CACGTG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	26
Sau3AI	GATC	4 cut(s)	57, 62, 100, 146
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	6 cut(s)	26, 74, 81, 97, 145, 183
SfuI	TTCGAA	1 cut(s)	45
Sse9I	AATT	3 cut(s)	13, 156, 220
SseBI	AGGCCT	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	26
StuI	AGGCCT	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	34
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	13, 156, 220
TspDTI	ATGAA	1 cut(s)	206
XapI	RAATTY	2 cut(s)	13, 220
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.