Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003237.1

Orthogroup ID

OG0017821

Physical Location & Seq

Genomic Coordinates Forward (+)

39787 .. 40232

Gene Structure 446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003237.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgtcaaagtttggtgaatttcttatttgggaaaaaagtattgctctttcgaattataagacggttgcaatttcgcagggcaagccatcaaattttgtagagctctccatcccaagggactttccaaatgattgggctccgatccaacacatgatagctgaaggcctggcaaggtctggatcaaaagaagcaaagttagggcgagaagacattgctgtaaggtggatcagaaccaattataaagcctacaagaaaactggtgtcatgcatgaaaaatatgaccggaagagtggagaattttggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004555 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005993 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015927 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044464 GO:0046352 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalase

Protein Analysis

102

Amino Acids

11.84

Weight (kDa)

9.69

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017821)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0261321 RchiOBHm_Chr6g0262861
rosa_multiflora	Rmu_sc0003237.1_g000009 Rmu_sc0003487.1_g000002 Rmu_sc0008322.1_g000017 Rmu_sc0036345.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434120 Rroxscaffold_7G00204910
rosa_rugosa	Rorug06G0000200
rosa_samantha	Rh6AG120500 Rh6DG101500
rosa_wichuraiana	Rw2G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	57, 240
AclWI	GGATC	3 cut(s)	136, 187, 233
AcsI	RAATTY	3 cut(s)	17, 91, 296
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	103, 158
AluI	AGCT	2 cut(s)	103, 158
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	3 cut(s)	136, 187, 233
AoxI	GGCC	1 cut(s)	163
ApoI	RAATTY	3 cut(s)	17, 91, 296
AsuHPI	GGTGA	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	50
BanII	GRGCYC	2 cut(s)	105, 139
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	2 cut(s)	94, 116
BciT130I	CCWGG	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	105, 139
Bsp143I	GATC	3 cut(s)	141, 179, 225
BspANI	GGCC	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	3 cut(s)	136, 187, 233
BspT104I	TTCGAA	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	3 cut(s)	141, 179, 225
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	3 cut(s)	144, 182, 228
BstMBI	GATC	3 cut(s)	141, 179, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	83
CviAII	CATG	3 cut(s)	151, 265, 269
CviJI	RGCY	6 cut(s)	85, 103, 137, 158, 165, 245
CviKI_1	RGCY	6 cut(s)	85, 103, 137, 158, 165, 245
DpnI	GATC	3 cut(s)	143, 181, 227
DpnII	GATC	3 cut(s)	141, 179, 225
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	105, 139
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	105, 139
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	3 cut(s)	154, 268, 272
FaiI	YATR	6 cut(s)	57, 152, 240, 266, 270, 279
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	150, 264, 268
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	2 cut(s)	105, 139
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	3 cut(s)	154, 268, 272
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	141, 230
Hpy188III	TCNNGA	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	68, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	154, 268, 272
Kzo9I	GATC	3 cut(s)	141, 179, 225
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	62, 152, 162, 179, 243, 296
MalI	GATC	3 cut(s)	143, 181, 227
MboI	GATC	3 cut(s)	141, 179, 225
MboII	GAAGA	2 cut(s)	218, 298
MhlI	GDGCHC	2 cut(s)	105, 139
MluCI	AATT	6 cut(s)	17, 52, 69, 91, 235, 296
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	1 cut(s)	297
Mph1103I	ATGCAT	1 cut(s)	270
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	3 cut(s)	141, 179, 225
NlaIII	CATG	3 cut(s)	154, 268, 272
NlaIV	GGNNCC	1 cut(s)	138
NsiI	ATGCAT	1 cut(s)	270
NspV	TTCGAA	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	165
PsiI	TTATAA	2 cut(s)	57, 240
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	105
Sau3AI	GATC	3 cut(s)	141, 179, 225
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	2 cut(s)	105, 139
SetI	ASST	5 cut(s)	105, 160, 176, 224, 308
SfuI	TTCGAA	1 cut(s)	50
Sse9I	AATT	6 cut(s)	17, 52, 69, 91, 235, 296
SseBI	AGGCCT	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	50
TasI	AATT	6 cut(s)	17, 52, 69, 91, 235, 296
TspDTI	ATGAA	1 cut(s)	285
XapI	RAATTY	3 cut(s)	17, 91, 296
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.