Lignin degradation and detoxification of lignin-derived products
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_2g12570 FvH4_2g12570 FvH4_2g12590 |
| rosa_chinensis | RchiOBHm_Chr2g0111951 RchiOBHm_Chr6g0273101 RchiOBHm_Chr6g0273121 RchiOBHm_Chr6g0273151 |
| rosa_laevigata | RLG00000013635 RLG00000013637 RLG00000013641 RLG00000013642 RLG00000013643 RLG00000017941 |
| rosa_multiflora | Rmu_sc0000239.1_g000097 Rmu_sc0000239.1_g000109 Rmu_sc0000239.1_g000114 Rmu_sc0005679.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00131960 Rroxscaffold_7G00195580 Rroxscaffold_7G00195630 Rroxscaffold_7G00195660 |
| rosa_rugosa | Rorug02G0177500 Rorug06G0073000 Rorug06G0073100 |
| rosa_samantha | Rh2CG233900 Rh2DG237500 Rh6BG191800 Rh6BG192000 Rh6CG191000 Rh6DG182600 |
| rosa_wichuraiana | Rw2G017790 Rw6G016320 Rw6G016330 Rw6G016380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1124 |
| AatII | GACGTC | 1 cut(s) | 78 |
| Acc36I | ACCTGC | 1 cut(s) | 1124 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 246 |
| AccBSI | CCGCTC | 2 cut(s) | 678, 935 |
| AccI | GTMKAC | 2 cut(s) | 941, 990 |
| AccII | CGCG | 1 cut(s) | 268 |
| AciI | CCGC | 6 cut(s) | 10, 266, 678, 933, 1119, 1250 |
| AclWI | GGATC | 2 cut(s) | 502, 1481 |
| AcoI | YGGCCR | 3 cut(s) | 415, 590, 1467 |
| AcsI | RAATTY | 3 cut(s) | 1051, 1512, 1612 |
| AcuI | CTGAAG | 1 cut(s) | 119 |
| AcvI | CACGTG | 1 cut(s) | 401 |
| AcyI | GRCGYC | 3 cut(s) | 75, 534, 563 |
| AdeI | CACNNNGTG | 1 cut(s) | 306 |
| AfaI | GTAC | 3 cut(s) | 917, 1334, 1358 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 28, 64, 246, 440, 1307, 1523, 1566, 1645, 1646 |
| AgsI | TTSAA | 5 cut(s) | 317, 644, 1156, 1264, 1349 |
| AjnI | CCWGG | 5 cut(s) | 27, 163, 319, 592, 790 |
| AleI | CACNNNNGTG | 2 cut(s) | 373, 731 |
| Alw26I | GTCTC | 3 cut(s) | 98, 1084, 1448 |
| AlwI | GGATC | 2 cut(s) | 502, 1481 |
| AoxI | GGCC | 5 cut(s) | 415, 590, 1014, 1467, 1636 |
| ApeKI | GCWGC | 4 cut(s) | 68, 746, 851, 1145 |
| ApoI | RAATTY | 3 cut(s) | 1051, 1512, 1612 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 219, 251 |
| AspS9I | GGNCC | 5 cut(s) | 167, 287, 1014, 1124, 1637 |
| AsuC2I | CCSGG | 2 cut(s) | 715, 1560 |
| AsuHPI | GGTGA | 6 cut(s) | 229, 292, 568, 1105, 1330, 1630 |
| AsuNHI | GCTAGC | 1 cut(s) | 1148 |
| AvaII | GGWCC | 3 cut(s) | 167, 287, 1124 |
| BaeGI | GKGCMC | 2 cut(s) | 720, 1047 |
| BalI | TGGCCA | 2 cut(s) | 417, 592 |
| BbrPI | CACGTG | 1 cut(s) | 401 |
| BbsI | GAAGAC | 1 cut(s) | 1236 |
| BbvI | GCAGC | 4 cut(s) | 55, 758, 838, 1132 |
| BccI | CCATC | 7 cut(s) | 41, 215, 278, 587, 1398, 1521, 1544 |
| BceAI | ACGGC | 3 cut(s) | 664, 834, 1456 |
| BciT130I | CCWGG | 5 cut(s) | 29, 165, 321, 594, 792 |
| BcnI | CCSGG | 2 cut(s) | 715, 1560 |
| BcoDI | GTCTC | 3 cut(s) | 98, 1084, 1448 |
| BfaI | CTAG | 4 cut(s) | 671, 1149, 1599, 1653 |
| BfmI | CTRYAG | 4 cut(s) | 85, 762, 987, 1204 |
| BfuAI | ACCTGC | 1 cut(s) | 1124 |
| BisI | GCNGC | 5 cut(s) | 10, 69, 747, 852, 1146 |
| BlsI | GCNGC | 5 cut(s) | 11, 70, 748, 853, 1147 |
| Bme1390I | CCNGG | 7 cut(s) | 29, 165, 321, 594, 715, 792, 1560 |
| Bme18I | GGWCC | 3 cut(s) | 167, 287, 1124 |
| BmgT120I | GGNCC | 5 cut(s) | 167, 287, 1014, 1124, 1637 |
| BmiI | GGNNCC | 2 cut(s) | 1125, 1639 |
| BmrFI | CCNGG | 7 cut(s) | 29, 165, 321, 594, 715, 792, 1560 |
| BmrI | ACTGGG | 1 cut(s) | 298 |
| BmsI | GCATC | 3 cut(s) | 129, 1349, 1408 |
| BmtI | GCTAGC | 1 cut(s) | 1152 |
| BmuI | ACTGGG | 1 cut(s) | 298 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1370 |
| BpiI | GAAGAC | 1 cut(s) | 1236 |
| BpmI | CTGGAG | 2 cut(s) | 774, 1293 |
| BpuMI | CCSGG | 2 cut(s) | 715, 1560 |
| BsaAI | YACGTR | 1 cut(s) | 401 |
| BsaHI | GRCGYC | 3 cut(s) | 75, 534, 563 |
| BsaI | GGTCTC | 2 cut(s) | 98, 1448 |
| BsaJI | CCNNGG | 7 cut(s) | 28, 63, 163, 537, 801, 1017, 1360 |
| BsaWI | WCCGGW | 2 cut(s) | 545, 1492 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 6, 36, 596, 626, 919, 949, 1447, 1477 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 28, 64, 246, 440, 1307, 1523, 1566, 1645, 1646 |
| Bse118I | RCCGGY | 1 cut(s) | 1252 |
| Bse1I | ACTGG | 6 cut(s) | 251, 304, 398, 574, 1451, 1682 |
| Bse3DI | GCAATG | 1 cut(s) | 846 |
| BseBI | CCWGG | 5 cut(s) | 29, 165, 321, 594, 792 |
| BseDI | CCNNGG | 7 cut(s) | 28, 63, 163, 537, 801, 1017, 1360 |
| BseGI | GGATG | 3 cut(s) | 1390, 1532, 1536 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 28, 64, 246, 440, 1307, 1523, 1566, 1645, 1646 |
| BseMI | GCAATG | 1 cut(s) | 846 |
| BseMII | CTCAG | 5 cut(s) | 366, 426, 1019, 1051, 1089 |
| BseNI | ACTGG | 6 cut(s) | 251, 304, 398, 574, 1451, 1682 |
| BseRI | GAGGAG | 3 cut(s) | 11, 14, 47 |
| BseSI | GKGCMC | 2 cut(s) | 720, 1047 |
| BseXI | GCAGC | 4 cut(s) | 55, 758, 838, 1132 |
| Bsh1236I | CGCG | 1 cut(s) | 268 |
| BshFI | GGCC | 5 cut(s) | 417, 592, 1016, 1469, 1638 |
| BsiSI | CCGG | 7 cut(s) | 546, 714, 1253, 1301, 1466, 1493, 1560 |
| BslFI | GGGAC | 3 cut(s) | 46, 1324, 1378 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 28, 64, 246, 440, 1307, 1523, 1566, 1645, 1646 |
| BsmAI | GTCTC | 3 cut(s) | 98, 1084, 1448 |
| BsmFI | GGGAC | 3 cut(s) | 46, 1324, 1378 |
| BsmI | GAATGC | 2 cut(s) | 1384, 1656 |
| BsnI | GGCC | 5 cut(s) | 417, 592, 1016, 1469, 1638 |
| Bso31I | GGTCTC | 2 cut(s) | 98, 1448 |
| Bsp1286I | GDGCHC | 2 cut(s) | 720, 1047 |
| Bsp143I | GATC | 3 cut(s) | 494, 1326, 1486 |
| Bsp19I | CCATGG | 3 cut(s) | 63, 537, 801 |
| BspACI | CCGC | 6 cut(s) | 10, 266, 678, 933, 1119, 1250 |
| BspANI | GGCC | 5 cut(s) | 417, 592, 1016, 1469, 1638 |
| BspCNI | CTCAG | 5 cut(s) | 365, 427, 1018, 1050, 1088 |
| BspFNI | CGCG | 1 cut(s) | 268 |
| BspLI | GGNNCC | 2 cut(s) | 1125, 1639 |
| BspMI | ACCTGC | 1 cut(s) | 1124 |
| BspOI | GCTAGC | 1 cut(s) | 1152 |
| BspPI | GGATC | 2 cut(s) | 502, 1481 |
| BspTNI | GGTCTC | 2 cut(s) | 98, 1448 |
| BsrBI | CCGCTC | 2 cut(s) | 678, 935 |
| BsrDI | GCAATG | 1 cut(s) | 846 |
| BsrFI | RCCGGY | 1 cut(s) | 1252 |
| BsrI | ACTGG | 6 cut(s) | 251, 304, 398, 574, 1451, 1682 |
| BssAI | RCCGGY | 1 cut(s) | 1252 |
| BssECI | CCNNGG | 7 cut(s) | 28, 63, 163, 537, 801, 1017, 1360 |
| BssMI | GATC | 3 cut(s) | 494, 1326, 1486 |
| BssNI | GRCGYC | 3 cut(s) | 75, 534, 563 |
| BssT1I | CCWWGG | 5 cut(s) | 63, 537, 801, 1017, 1360 |
| Bst2UI | CCWGG | 5 cut(s) | 29, 165, 321, 594, 792 |
| Bst4CI | ACNGT | 6 cut(s) | 148, 211, 409, 730, 1290, 1507 |
| BstACI | GRCGYC | 3 cut(s) | 75, 534, 563 |
| BstBAI | YACGTR | 1 cut(s) | 401 |
| BstC8I | GCNNGC | 7 cut(s) | 381, 590, 856, 1024, 1143, 1150, 1197 |
| BstDEI | CTNAG | 7 cut(s) | 352, 435, 1005, 1037, 1075, 1644, 1692 |
| BstDSI | CCRYGG | 3 cut(s) | 63, 537, 801 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 438 |
| BstF5I | GGATG | 3 cut(s) | 1390, 1532, 1536 |
| BstFNI | CGCG | 1 cut(s) | 268 |
| BstKTI | GATC | 3 cut(s) | 497, 1329, 1489 |
| BstMAI | GTCTC | 3 cut(s) | 98, 1084, 1448 |
| BstMBI | GATC | 3 cut(s) | 494, 1326, 1486 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 743 |
| BstNI | CCWGG | 5 cut(s) | 29, 165, 321, 594, 792 |
| BstNSI | RCATGY | 1 cut(s) | 383 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1370 |
| BstSCI | CCNGG | 7 cut(s) | 27, 163, 319, 592, 713, 790, 1558 |
| BstSFI | CTRYAG | 4 cut(s) | 85, 762, 987, 1204 |
| BstSLI | GKGCMC | 2 cut(s) | 720, 1047 |
| BstUI | CGCG | 1 cut(s) | 268 |
| BstV1I | GCAGC | 4 cut(s) | 55, 758, 838, 1132 |
| BstV2I | GAAGAC | 1 cut(s) | 1236 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1427 |
| BsuRI | GGCC | 5 cut(s) | 417, 592, 1016, 1469, 1638 |
| BtgI | CCRYGG | 3 cut(s) | 63, 537, 801 |
| BtsCI | GGATG | 3 cut(s) | 1390, 1532, 1536 |
| BtsIMutI | CAGTG | 7 cut(s) | 144, 244, 311, 567, 735, 1045, 1503 |
| BveI | ACCTGC | 1 cut(s) | 1124 |
| Cac8I | GCNNGC | 7 cut(s) | 381, 590, 856, 1024, 1143, 1150, 1197 |
| Cfr10I | RCCGGY | 1 cut(s) | 1252 |
| Cfr13I | GGNCC | 5 cut(s) | 167, 287, 1014, 1124, 1637 |
| CseI | GACGC | 3 cut(s) | 542, 552, 752 |
| Csp6I | GTAC | 3 cut(s) | 916, 1333, 1357 |
| CviQI | GTAC | 3 cut(s) | 916, 1333, 1357 |
| DdeI | CTNAG | 7 cut(s) | 352, 435, 1005, 1037, 1075, 1644, 1692 |
| DpnI | GATC | 3 cut(s) | 496, 1328, 1488 |
| DpnII | GATC | 3 cut(s) | 494, 1326, 1486 |
| DraIII | CACNNNGTG | 1 cut(s) | 306 |
| EaeI | YGGCCR | 3 cut(s) | 415, 590, 1467 |
| Eco130I | CCWWGG | 5 cut(s) | 63, 537, 801, 1017, 1360 |
| Eco31I | GGTCTC | 2 cut(s) | 98, 1448 |
| Eco47I | GGWCC | 3 cut(s) | 167, 287, 1124 |
| Eco57I | CTGAAG | 1 cut(s) | 119 |
| Eco72I | CACGTG | 1 cut(s) | 401 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 438 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1014 |
| EcoRI | GAATTC | 2 cut(s) | 1512, 1612 |
| EcoRII | CCWGG | 5 cut(s) | 27, 163, 319, 592, 790 |
| EcoT14I | CCWWGG | 5 cut(s) | 63, 537, 801, 1017, 1360 |
| EcoT22I | ATGCAT | 2 cut(s) | 1401, 1578 |
| ErhI | CCWWGG | 5 cut(s) | 63, 537, 801, 1017, 1360 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 354, 386 |
| FaqI | GGGAC | 3 cut(s) | 46, 1324, 1378 |
| FauI | CCCGC | 1 cut(s) | 1112 |
| FblI | GTMKAC | 2 cut(s) | 941, 990 |
| Fnu4HI | GCNGC | 5 cut(s) | 10, 69, 747, 852, 1146 |
| FokI | GGATG | 3 cut(s) | 1377, 1523, 1539 |
| Fsp4HI | GCNGC | 5 cut(s) | 10, 69, 747, 852, 1146 |
| FspBI | CTAG | 4 cut(s) | 671, 1149, 1599, 1653 |
| GluI | GCNGC | 5 cut(s) | 10, 69, 747, 852, 1146 |
| GsuI | CTGGAG | 2 cut(s) | 774, 1293 |
| HaeIII | GGCC | 5 cut(s) | 417, 592, 1016, 1469, 1638 |
| HapII | CCGG | 7 cut(s) | 546, 714, 1253, 1301, 1466, 1493, 1560 |
| HgaI | GACGC | 3 cut(s) | 542, 552, 752 |
| Hin1I | GRCGYC | 3 cut(s) | 75, 534, 563 |
| HincII | GTYRAC | 2 cut(s) | 942, 1501 |
| HindII | GTYRAC | 2 cut(s) | 942, 1501 |
| HinfI | GANTC | 6 cut(s) | 120, 155, 573, 869, 1065, 1542 |
| HpaII | CCGG | 7 cut(s) | 546, 714, 1253, 1301, 1466, 1493, 1560 |
| HphI | GGTGA | 6 cut(s) | 229, 292, 568, 1105, 1330, 1630 |
| Hpy166II | GTNNAC | 9 cut(s) | 79, 333, 567, 918, 942, 991, 1087, 1357, 1501 |
| Hpy188I | TCNGA | 7 cut(s) | 99, 283, 355, 707, 1128, 1518, 1541 |
| Hpy188III | TCNNGA | 4 cut(s) | 290, 1272, 1375, 1630 |
| Hpy8I | GTNNAC | 9 cut(s) | 79, 333, 567, 918, 942, 991, 1087, 1357, 1501 |
| Hpy99I | CGWCG | 2 cut(s) | 943, 1665 |
| HpyAV | CCTTC | 5 cut(s) | 94, 356, 892, 920, 966 |
| HpyCH4III | ACNGT | 6 cut(s) | 148, 211, 409, 730, 1290, 1507 |
| HpyCH4IV | ACGT | 4 cut(s) | 75, 400, 513, 1591 |
| HpyCH4V | TGCA | 5 cut(s) | 383, 1195, 1382, 1399, 1576 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 743 |
| HpyF3I | CTNAG | 7 cut(s) | 352, 435, 1005, 1037, 1075, 1644, 1692 |
| HpySE526I | ACGT | 4 cut(s) | 75, 400, 513, 1591 |
| Hsp92I | GRCGYC | 3 cut(s) | 75, 534, 563 |
| Kzo9I | GATC | 3 cut(s) | 494, 1326, 1486 |
| LmnI | GCTCC | 5 cut(s) | 596, 617, 793, 883, 940 |
| Lsp1109I | GCAGC | 4 cut(s) | 55, 758, 838, 1132 |
| LweI | GCATC | 3 cut(s) | 129, 1349, 1408 |
| MaeI | CTAG | 4 cut(s) | 671, 1149, 1599, 1653 |
| MaeII | ACGT | 4 cut(s) | 75, 400, 513, 1591 |
| MalI | GATC | 3 cut(s) | 496, 1328, 1488 |
| MbiI | CCGCTC | 2 cut(s) | 678, 935 |
| MboI | GATC | 3 cut(s) | 494, 1326, 1486 |
| MboII | GAAGA | 9 cut(s) | 31, 371, 653, 656, 694, 704, 1241, 1333, 1531 |
| MfeI | CAATTG | 2 cut(s) | 607, 1344 |
| MhlI | GDGCHC | 2 cut(s) | 720, 1047 |
| MlsI | TGGCCA | 2 cut(s) | 417, 592 |
| MluNI | TGGCCA | 2 cut(s) | 417, 592 |
| MlyI | GAGTC | 3 cut(s) | 114, 164, 863 |
| MmeI | TCCRAC | 3 cut(s) | 194, 639, 1489 |
| MnlI | CCTC | 9 cut(s) | 32, 35, 68, 334, 434, 553, 1096, 1297, 1680 |
| Mox20I | TGGCCA | 2 cut(s) | 417, 592 |
| Mph1103I | ATGCAT | 2 cut(s) | 1401, 1578 |
| MscI | TGGCCA | 2 cut(s) | 417, 592 |
| MseI | TTAA | 4 cut(s) | 504, 755, 1010, 1214 |
| MslI | CAYNNNNRTG | 6 cut(s) | 219, 249, 373, 731, 1038, 1404 |
| Msp20I | TGGCCA | 2 cut(s) | 417, 592 |
| MspI | CCGG | 7 cut(s) | 546, 714, 1253, 1301, 1466, 1493, 1560 |
| MspR9I | CCNGG | 7 cut(s) | 29, 165, 321, 594, 715, 792, 1560 |
| MunI | CAATTG | 2 cut(s) | 607, 1344 |
| Mva1269I | GAATGC | 2 cut(s) | 1384, 1656 |
| MvaI | CCWGG | 5 cut(s) | 29, 165, 321, 594, 792 |
| MvnI | CGCG | 1 cut(s) | 268 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 743 |
| NciI | CCSGG | 2 cut(s) | 715, 1560 |
| NcoI | CCATGG | 3 cut(s) | 63, 537, 801 |
| NdeII | GATC | 3 cut(s) | 494, 1326, 1486 |
| NheI | GCTAGC | 1 cut(s) | 1148 |
| NlaIV | GGNNCC | 2 cut(s) | 1125, 1639 |
| NmuCI | GTSAC | 5 cut(s) | 235, 396, 551, 766, 1111 |
| NsiI | ATGCAT | 2 cut(s) | 1401, 1578 |
| NspI | RCATGY | 1 cut(s) | 383 |
| OliI | CACNNNNGTG | 2 cut(s) | 373, 731 |
| PaeI | GCATGC | 1 cut(s) | 383 |
| PaqCI | CACCTGC | 1 cut(s) | 1124 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 882 |
| PctI | GAATGC | 2 cut(s) | 1384, 1656 |
| PfeI | GAWTC | 3 cut(s) | 573, 1065, 1542 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 246 |
| PfoI | TCCNGGA | 2 cut(s) | 790, 1558 |
| PkrI | GCNGC | 5 cut(s) | 11, 70, 748, 853, 1147 |
| PleI | GAGTC | 3 cut(s) | 114, 163, 863 |
| PmaCI | CACGTG | 1 cut(s) | 401 |
| PmlI | CACGTG | 1 cut(s) | 401 |
| PpsI | GAGTC | 3 cut(s) | 114, 163, 863 |
| Ppu21I | YACGTR | 1 cut(s) | 401 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1370 |
| Psp6I | CCWGG | 5 cut(s) | 27, 163, 319, 592, 790 |
| PspCI | CACGTG | 1 cut(s) | 401 |
| PspGI | CCWGG | 5 cut(s) | 27, 163, 319, 592, 790 |
| PspN4I | GGNNCC | 2 cut(s) | 1125, 1639 |
| PspPI | GGNCC | 5 cut(s) | 167, 287, 1014, 1124, 1637 |
| RsaI | GTAC | 3 cut(s) | 917, 1334, 1358 |
| RsaNI | GTAC | 3 cut(s) | 916, 1333, 1357 |
| RseI | CAYNNNNRTG | 6 cut(s) | 219, 249, 373, 731, 1038, 1404 |
| SalI | GTCGAC | 1 cut(s) | 940 |
| SaqAI | TTAA | 4 cut(s) | 504, 755, 1010, 1214 |
| SatI | GCNGC | 5 cut(s) | 10, 69, 747, 852, 1146 |
| Sau3AI | GATC | 3 cut(s) | 494, 1326, 1486 |
| Sau96I | GGNCC | 5 cut(s) | 167, 287, 1014, 1124, 1637 |
| SchI | GAGTC | 3 cut(s) | 114, 164, 863 |
| ScrFI | CCNGG | 7 cut(s) | 29, 165, 321, 594, 715, 792, 1560 |
| SduI | GDGCHC | 2 cut(s) | 720, 1047 |
| SfaNI | GCATC | 3 cut(s) | 129, 1349, 1408 |
| SfcI | CTRYAG | 4 cut(s) | 85, 762, 987, 1204 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1252 |
| SinI | GGWCC | 3 cut(s) | 167, 287, 1124 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 219, 249, 373, 731, 1038, 1404 |
| SphI | GCATGC | 1 cut(s) | 383 |
| SsiI | CCGC | 6 cut(s) | 10, 266, 678, 933, 1119, 1250 |
| SspMI | CTAG | 4 cut(s) | 671, 1149, 1599, 1653 |
| StyD4I | CCNGG | 7 cut(s) | 27, 163, 319, 592, 713, 790, 1558 |
| StyI | CCWWGG | 5 cut(s) | 63, 537, 801, 1017, 1360 |
| TaaI | ACNGT | 6 cut(s) | 148, 211, 409, 730, 1290, 1507 |
| TaiI | ACGT | 4 cut(s) | 78, 403, 516, 1594 |
| TaqI | TCGA | 6 cut(s) | 867, 885, 941, 1329, 1485, 1660 |
| TauI | GCSGC | 1 cut(s) | 12 |
| TfiI | GAWTC | 3 cut(s) | 573, 1065, 1542 |
| Tru1I | TTAA | 4 cut(s) | 504, 755, 1010, 1214 |
| Tru9I | TTAA | 4 cut(s) | 504, 755, 1010, 1214 |
| TscAI | CASTG | 7 cut(s) | 151, 251, 311, 574, 735, 1045, 1510 |
| TseFI | GTSAC | 5 cut(s) | 235, 396, 551, 766, 1111 |
| TseI | GCWGC | 4 cut(s) | 68, 746, 851, 1145 |
| Tsp45I | GTSAC | 5 cut(s) | 235, 396, 551, 766, 1111 |
| TspDTI | ATGAA | 7 cut(s) | 203, 264, 372, 401, 701, 705, 1625 |
| TspGWI | ACGGA | 2 cut(s) | 927, 1072 |
| TspRI | CASTG | 7 cut(s) | 151, 251, 311, 574, 735, 1045, 1510 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 246 |
| VpaK11BI | GGWCC | 3 cut(s) | 167, 287, 1124 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 438 |
| XapI | RAATTY | 3 cut(s) | 1051, 1512, 1612 |
| XceI | RCATGY | 1 cut(s) | 383 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1477 |
| XmiI | GTMKAC | 2 cut(s) | 941, 990 |
| XspI | CTAG | 4 cut(s) | 671, 1149, 1599, 1653 |
| ZraI | GACGTC | 1 cut(s) | 76 |
| Zsp2I | ATGCAT | 2 cut(s) | 1401, 1578 |