RLG00000013637

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
34618082 .. 34621317
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013637

Sequence Viewer

Length: 1593 bp
ATGGGTTGCCGCATACTCGTCCTTCTCTTGGGGACTTTCTTCCTTAATGGGCTACTCCTCTCCATGGCTGCTGACGTCCACCACTACAGCTTTATTCTGAAGGAGACCAACTTTACAAGACTCTGTTTCACAAAGCCGATGCTCATTGTAAATGAGTCGTTCCCAGGTCCAACCATTCATGTTCGCAAAGGCGATACTGCTTTTGTTACTGTTCATAATGATGGCAAATATGGTGTCACCATTCACTGGCATGGAGTAAAGCAACCGCATAATCCATGGTCAAATGGTCCAGAAAATATCACTCAGTGTCCAATTCAACCCGGAAAGAATTTCACTTATGAGGTCATATTCTCGGATGAAGAAGGCACACTTTGGTGGCATGCACATAGCGACTGGTCACGTGCCACAGTTCACGGCCACATTGTTATTTTACCTGAGAGAGGAAAAACTTATCCATTTCCTACAATTTTTCTTGGATCATGGTTCAATACAGACGTAAAGGAACTAATTGATGACACCACGGCAACCGGAAGTGACCCAGAGTGGTCCGATGGATTCACTATCAATGGCTACGGTGTTATGAACGAAGAAATGTTCTTCGGAAGTGCCGGGCACAACTTCACAGTGGTGGCACAAGACGCAGCTTACTTAAAGCCTATAGTCACAAGCTACATAATGATAGCTCCAGGCCAAACCATGGATATTCTACTAACAACAGACCAGACCCCAAGCTACTATTACATTGCTGCCAGCCCATTTTTTGACTCAAACGCTCCCTTCGACAACACCACCACCACGGCCATCCTCCGGTACACGAACGTAACTTCCACCCCATCGACAATTCCCATGCCTTCACTTCCCTTTGTAACAGACAAACAAGCTGTAGACAACTTCACAGCTCAGTTAAGGGCCTTGGCAAGCAAGGAACATCCTATCAGTGTGCGTAAAAATTTTAGCGAAAGAATCATAATCTCAGTCTCGATGAACCAACTACCTTGTGAGGCTAATGTCACCTGCGGGGGTCCGAACGGTAACAGGCTGGCTGCTAGCCTGAACAATATCAGCTTCTCTACCCCCACTACTGACATATTGCAAGCATACGATAGGAACTTAAATGATACCTACGAAGACGATTTTCCAAATCAACCGCCGGTGTATTTCAACTTTTCTGGAGTTGATACAGAACTATATCTATTGCCGGAGGTAGGGACAAAGGTGAAGATGATCGAGTACGGGGCATCAATTGAAATTGTGTACCAGGGGACTAATGTCGGGAATGCAGAAAACCATCCAATGCATCTACATGGTTACAGCTTCTATGTCGTTGGGTCAGCTTACGGCAACTGGAATGAGACCACTTCTCCGGCCACTTACAACTTGGTCGATCCACCAGAAGTGAACACTGTTGGAGTTCCGAAGAATGGATGGACTGCCATCCGATTCGTTGCTAACAATCCCGGAGTGTGGTTTATGCATTGTCATTTAGAACGTCACGCTAGTTGGGGTATGAATTCGGTGATTATTGTCAAGAATGGCCCCACTAATGGCACTAGAATTCGACAACCCCCTTCAAACTTGTCAGTTTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

58.88

Weight (kDa)

5.57

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 34 - 146 6.6e-37 Multicopper oxidase
Cu-oxidase PF00394 194 - 273 1.7e-20 Multicopper oxidase
Cu-oxidase_2 PF07731 379 - 511 1.1e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1022
AatII GACGTC 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 1022
AccB7I CCANNNNNTGG 2 cut(s) 246, 697
AccI GTMKAC 1 cut(s) 885
AciI CCGC 4 cut(s) 10, 266, 1017, 1148
AclWI GGATC 2 cut(s) 484, 1379
AcoI YGGCCR 3 cut(s) 415, 798, 1365
AcsI RAATTY 4 cut(s) 328, 949, 1510, 1554
AcuI CTGAAG 1 cut(s) 119
AcvI CACGTG 1 cut(s) 401
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 306
AfaI GTAC 3 cut(s) 812, 1232, 1256
AgsI TTSAA 5 cut(s) 317, 487, 1162, 1247, 1572
AjnI CCWGG 3 cut(s) 163, 685, 1257
AleI CACNNNNGTG 2 cut(s) 373, 626
AloI GAACNNNNNNTCC 2 cut(s) 809, 841
Alw26I GTCTC 3 cut(s) 98, 982, 1346
AlwI GGATC 2 cut(s) 484, 1379
AoxI GGCC 6 cut(s) 415, 688, 798, 909, 1365, 1534
ApeKI GCWGC 4 cut(s) 68, 641, 746, 1043
ApoI RAATTY 4 cut(s) 328, 949, 1510, 1554
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AspS9I GGNCC 6 cut(s) 167, 287, 546, 909, 1022, 1535
AsuC2I CCSGG 3 cut(s) 321, 610, 1458
AsuHPI GGTGA 4 cut(s) 229, 1003, 1228, 1528
AsuNHI GCTAGC 1 cut(s) 1046
AvaII GGWCC 4 cut(s) 167, 287, 546, 1022
BaeGI GKGCMC 1 cut(s) 615
BbrPI CACGTG 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 1134
BbvI GCAGC 4 cut(s) 55, 653, 733, 1030
BccI CCATC 7 cut(s) 215, 545, 809, 841, 1296, 1419, 1442
BceAI ACGGC 4 cut(s) 430, 537, 813, 1354
BciT130I CCWGG 3 cut(s) 165, 687, 1259
BcnI CCSGG 3 cut(s) 321, 610, 1458
BcoDI GTCTC 3 cut(s) 98, 982, 1346
BfaI CTAG 3 cut(s) 1047, 1497, 1551
BfmI CTRYAG 3 cut(s) 85, 657, 882
BfuAI ACCTGC 1 cut(s) 1022
BisI GCNGC 5 cut(s) 10, 69, 642, 747, 1044
BlsI GCNGC 5 cut(s) 11, 70, 643, 748, 1045
Bme1390I CCNGG 6 cut(s) 165, 321, 610, 687, 1259, 1458
Bme18I GGWCC 4 cut(s) 167, 287, 546, 1022
BmgT120I GGNCC 6 cut(s) 167, 287, 546, 909, 1022, 1535
BmiI GGNNCC 2 cut(s) 1023, 1537
BmrFI CCNGG 6 cut(s) 165, 321, 610, 687, 1259, 1458
BmsI GCATC 3 cut(s) 129, 1247, 1306
BmtI GCTAGC 1 cut(s) 1050
BoxI GACNNNNGTC 1 cut(s) 1268
BpiI GAAGAC 1 cut(s) 1134
BpmI CTGGAG 2 cut(s) 669, 1191
BpuMI CCSGG 3 cut(s) 321, 610, 1458
BsaAI YACGTR 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 98, 1346
BsaJI CCNNGG 8 cut(s) 63, 163, 275, 519, 696, 795, 912, 1258
BsaWI WCCGGW 2 cut(s) 527, 807
BsaXI ACNNNNNCTCC 2 cut(s) 1345, 1375
Bse118I RCCGGY 1 cut(s) 1150
Bse1I ACTGG 3 cut(s) 251, 398, 1349
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 3 cut(s) 165, 687, 1259
BseDI CCNNGG 8 cut(s) 63, 163, 275, 519, 696, 795, 912, 1258
BseGI GGATG 6 cut(s) 361, 801, 928, 1288, 1430, 1434
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 4 cut(s) 317, 426, 914, 987
BseNI ACTGG 3 cut(s) 251, 398, 1349
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 4 cut(s) 55, 653, 733, 1030
BshFI GGCC 6 cut(s) 417, 690, 800, 911, 1367, 1536
BsiSI CCGG 8 cut(s) 321, 528, 609, 808, 1151, 1199, 1364, 1458
BslFI GGGAC 3 cut(s) 46, 1222, 1276
BsmAI GTCTC 3 cut(s) 98, 982, 1346
BsmFI GGGAC 3 cut(s) 46, 1222, 1276
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 6 cut(s) 417, 690, 800, 911, 1367, 1536
Bso31I GGTCTC 2 cut(s) 98, 1346
Bsp1286I GDGCHC 1 cut(s) 615
Bsp143I GATC 3 cut(s) 476, 1224, 1384
Bsp19I CCATGG 3 cut(s) 63, 275, 696
BspACI CCGC 4 cut(s) 10, 266, 1017, 1148
BspANI GGCC 6 cut(s) 417, 690, 800, 911, 1367, 1536
BspCNI CTCAG 4 cut(s) 316, 427, 913, 986
BspLI GGNNCC 2 cut(s) 1023, 1537
BspMI ACCTGC 1 cut(s) 1022
BspOI GCTAGC 1 cut(s) 1050
BspPI GGATC 2 cut(s) 484, 1379
BspTNI GGTCTC 2 cut(s) 98, 1346
BsrDI GCAATG 1 cut(s) 741
BsrFI RCCGGY 1 cut(s) 1150
BsrI ACTGG 3 cut(s) 251, 398, 1349
BssAI RCCGGY 1 cut(s) 1150
BssECI CCNNGG 8 cut(s) 63, 163, 275, 519, 696, 795, 912, 1258
BssMI GATC 3 cut(s) 476, 1224, 1384
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 4 cut(s) 63, 275, 696, 912
Bst2UI CCWGG 3 cut(s) 165, 687, 1259
Bst4CI ACNGT 6 cut(s) 211, 409, 575, 625, 1031, 1405
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 401
BstC8I GCNNGC 6 cut(s) 381, 751, 919, 1041, 1048, 1095
BstDEI CTNAG 5 cut(s) 303, 435, 900, 973, 1590
BstDSI CCRYGG 5 cut(s) 63, 275, 519, 696, 795
BstENI CCTNNNNNAGG 1 cut(s) 438
BstF5I GGATG 6 cut(s) 361, 801, 928, 1288, 1430, 1434
BstKTI GATC 3 cut(s) 479, 1227, 1387
BstMAI GTCTC 3 cut(s) 98, 982, 1346
BstMBI GATC 3 cut(s) 476, 1224, 1384
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstNI CCWGG 3 cut(s) 165, 687, 1259
BstNSI RCATGY 1 cut(s) 383
BstPAI GACNNNNGTC 1 cut(s) 1268
BstSCI CCNGG 6 cut(s) 163, 319, 608, 685, 1257, 1456
BstSFI CTRYAG 3 cut(s) 85, 657, 882
BstSLI GKGCMC 1 cut(s) 615
BstV1I GCAGC 4 cut(s) 55, 653, 733, 1030
BstV2I GAAGAC 1 cut(s) 1134
BsuRI GGCC 6 cut(s) 417, 690, 800, 911, 1367, 1536
BtgI CCRYGG 5 cut(s) 63, 275, 519, 696, 795
BtsCI GGATG 6 cut(s) 361, 801, 928, 1288, 1430, 1434
BtsIMutI CAGTG 5 cut(s) 244, 311, 630, 943, 1401
BveI ACCTGC 1 cut(s) 1022
Cac8I GCNNGC 6 cut(s) 381, 751, 919, 1041, 1048, 1095
Cfr10I RCCGGY 1 cut(s) 1150
Cfr13I GGNCC 6 cut(s) 167, 287, 546, 909, 1022, 1535
CseI GACGC 1 cut(s) 647
Csp6I GTAC 3 cut(s) 811, 1231, 1255
CviAII CATG 9 cut(s) 64, 179, 251, 276, 380, 480, 697, 847, 1304
CviQI GTAC 3 cut(s) 811, 1231, 1255
DdeI CTNAG 5 cut(s) 303, 435, 900, 973, 1590
DpnI GATC 3 cut(s) 478, 1226, 1386
DpnII GATC 3 cut(s) 476, 1224, 1384
DraIII CACNNNGTG 1 cut(s) 306
EaeI YGGCCR 3 cut(s) 415, 798, 1365
Eco130I CCWWGG 4 cut(s) 63, 275, 696, 912
Eco31I GGTCTC 2 cut(s) 98, 1346
Eco47I GGWCC 4 cut(s) 167, 287, 546, 1022
Eco57I CTGAAG 1 cut(s) 119
Eco72I CACGTG 1 cut(s) 401
EcoNI CCTNNNNNAGG 1 cut(s) 438
EcoO109I RGGNCCY 1 cut(s) 909
EcoRI GAATTC 2 cut(s) 1510, 1554
EcoRII CCWGG 3 cut(s) 163, 685, 1257
EcoT14I CCWWGG 4 cut(s) 63, 275, 696, 912
EcoT22I ATGCAT 2 cut(s) 1299, 1476
ErhI CCWWGG 4 cut(s) 63, 275, 696, 912
FaeI CATG 9 cut(s) 67, 182, 254, 279, 383, 483, 700, 850, 1307
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 3 cut(s) 46, 1222, 1276
FatI CATG 9 cut(s) 63, 178, 250, 275, 379, 479, 696, 846, 1303
FauI CCCGC 1 cut(s) 1010
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 5 cut(s) 10, 69, 642, 747, 1044
FokI GGATG 6 cut(s) 368, 788, 915, 1275, 1421, 1437
Fsp4HI GCNGC 5 cut(s) 10, 69, 642, 747, 1044
FspBI CTAG 3 cut(s) 1047, 1497, 1551
GluI GCNGC 5 cut(s) 10, 69, 642, 747, 1044
GsuI CTGGAG 2 cut(s) 669, 1191
HaeIII GGCC 6 cut(s) 417, 690, 800, 911, 1367, 1536
HapII CCGG 8 cut(s) 321, 528, 609, 808, 1151, 1199, 1364, 1458
HgaI GACGC 1 cut(s) 647
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 9 cut(s) 67, 182, 254, 279, 383, 483, 700, 850, 1307
HinfI GANTC 6 cut(s) 120, 155, 555, 764, 963, 1440
HpaII CCGG 8 cut(s) 321, 528, 609, 808, 1151, 1199, 1364, 1458
HphI GGTGA 4 cut(s) 229, 1003, 1228, 1528
Hpy166II GTNNAC 6 cut(s) 79, 412, 813, 886, 1255, 1399
Hpy188I TCNGA 7 cut(s) 99, 355, 550, 602, 1026, 1416, 1439
Hpy188III TCNNGA 5 cut(s) 290, 979, 1170, 1273, 1528
Hpy8I GTNNAC 6 cut(s) 79, 412, 813, 886, 1255, 1399
HpyAV CCTTC 6 cut(s) 32, 94, 356, 787, 861, 1578
HpyCH4III ACNGT 6 cut(s) 211, 409, 575, 625, 1031, 1405
HpyCH4IV ACGT 5 cut(s) 75, 400, 495, 819, 1489
HpyCH4V TGCA 5 cut(s) 383, 1093, 1280, 1297, 1474
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 5 cut(s) 303, 435, 900, 973, 1590
HpySE526I ACGT 5 cut(s) 75, 400, 495, 819, 1489
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 9 cut(s) 67, 182, 254, 279, 383, 483, 700, 850, 1307
Kzo9I GATC 3 cut(s) 476, 1224, 1384
LmnI GCTCC 2 cut(s) 688, 778
Lsp1109I GCAGC 4 cut(s) 55, 653, 733, 1030
LweI GCATC 3 cut(s) 129, 1247, 1306
MaeI CTAG 3 cut(s) 1047, 1497, 1551
MaeII ACGT 5 cut(s) 75, 400, 495, 819, 1489
MalI GATC 3 cut(s) 478, 1226, 1386
MboI GATC 3 cut(s) 476, 1224, 1384
MboII GAAGA 7 cut(s) 31, 371, 589, 599, 1139, 1231, 1429
MfeI CAATTG 1 cut(s) 1242
MhlI GDGCHC 1 cut(s) 615
MlyI GAGTC 3 cut(s) 114, 164, 758
MmeI TCCRAC 2 cut(s) 194, 1387
MnlI CCTC 6 cut(s) 68, 334, 434, 815, 994, 1195
Mph1103I ATGCAT 2 cut(s) 1299, 1476
MseI TTAA 4 cut(s) 45, 650, 905, 1112
MslI CAYNNNNRTG 5 cut(s) 219, 249, 373, 626, 1302
MspI CCGG 8 cut(s) 321, 528, 609, 808, 1151, 1199, 1364, 1458
MspR9I CCNGG 6 cut(s) 165, 321, 610, 687, 1259, 1458
MunI CAATTG 1 cut(s) 1242
Mva1269I GAATGC 1 cut(s) 1282
MvaI CCWGG 3 cut(s) 165, 687, 1259
MwoI GCNNNNNNNGC 1 cut(s) 638
NciI CCSGG 3 cut(s) 321, 610, 1458
NcoI CCATGG 3 cut(s) 63, 275, 696
NdeII GATC 3 cut(s) 476, 1224, 1384
NheI GCTAGC 1 cut(s) 1046
NlaIII CATG 9 cut(s) 67, 182, 254, 279, 383, 483, 700, 850, 1307
NlaIV GGNNCC 2 cut(s) 1023, 1537
NmuCI GTSAC 6 cut(s) 235, 396, 533, 661, 1009, 1490
NsiI ATGCAT 2 cut(s) 1299, 1476
NspI RCATGY 1 cut(s) 383
OliI CACNNNNGTG 2 cut(s) 373, 626
PaeI GCATGC 1 cut(s) 383
PaqCI CACCTGC 1 cut(s) 1022
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PctI GAATGC 1 cut(s) 1282
PfeI GAWTC 3 cut(s) 555, 963, 1440
PflMI CCANNNNNTGG 2 cut(s) 246, 697
PfoI TCCNGGA 1 cut(s) 1456
PkrI GCNGC 5 cut(s) 11, 70, 643, 748, 1045
PleI GAGTC 3 cut(s) 114, 163, 758
PmaCI CACGTG 1 cut(s) 401
PmlI CACGTG 1 cut(s) 401
PpsI GAGTC 3 cut(s) 114, 163, 758
Ppu21I YACGTR 1 cut(s) 401
PshAI GACNNNNGTC 1 cut(s) 1268
Psp6I CCWGG 3 cut(s) 163, 685, 1257
PspCI CACGTG 1 cut(s) 401
PspGI CCWGG 3 cut(s) 163, 685, 1257
PspN4I GGNNCC 2 cut(s) 1023, 1537
PspPI GGNCC 6 cut(s) 167, 287, 546, 909, 1022, 1535
RsaI GTAC 3 cut(s) 812, 1232, 1256
RsaNI GTAC 3 cut(s) 811, 1231, 1255
RseI CAYNNNNRTG 5 cut(s) 219, 249, 373, 626, 1302
SaqAI TTAA 4 cut(s) 45, 650, 905, 1112
SatI GCNGC 5 cut(s) 10, 69, 642, 747, 1044
Sau3AI GATC 3 cut(s) 476, 1224, 1384
Sau96I GGNCC 6 cut(s) 167, 287, 546, 909, 1022, 1535
SchI GAGTC 3 cut(s) 114, 164, 758
ScrFI CCNGG 6 cut(s) 165, 321, 610, 687, 1259, 1458
SduI GDGCHC 1 cut(s) 615
SfaNI GCATC 3 cut(s) 129, 1247, 1306
SfcI CTRYAG 3 cut(s) 85, 657, 882
SgrAI CRCCGGYG 1 cut(s) 1150
SinI GGWCC 4 cut(s) 167, 287, 546, 1022
SmiMI CAYNNNNRTG 5 cut(s) 219, 249, 373, 626, 1302
SphI GCATGC 1 cut(s) 383
SsiI CCGC 4 cut(s) 10, 266, 1017, 1148
SspMI CTAG 3 cut(s) 1047, 1497, 1551
StyD4I CCNGG 6 cut(s) 163, 319, 608, 685, 1257, 1456
StyI CCWWGG 4 cut(s) 63, 275, 696, 912
TaaI ACNGT 6 cut(s) 211, 409, 575, 625, 1031, 1405
TaiI ACGT 5 cut(s) 78, 403, 498, 822, 1492
TaqI TCGA 6 cut(s) 780, 836, 980, 1227, 1383, 1558
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 3 cut(s) 555, 963, 1440
Tru1I TTAA 4 cut(s) 45, 650, 905, 1112
Tru9I TTAA 4 cut(s) 45, 650, 905, 1112
TscAI CASTG 5 cut(s) 251, 311, 630, 943, 1408
TseFI GTSAC 6 cut(s) 235, 396, 533, 661, 1009, 1490
TseI GCWGC 4 cut(s) 68, 641, 746, 1043
Tsp45I GTSAC 6 cut(s) 235, 396, 533, 661, 1009, 1490
TspDTI ATGAA 6 cut(s) 167, 203, 372, 596, 998, 1523
TspRI CASTG 5 cut(s) 251, 311, 630, 943, 1408
Van91I CCANNNNNTGG 2 cut(s) 246, 697
VpaK11BI GGWCC 4 cut(s) 167, 287, 546, 1022
XagI CCTNNNNNAGG 1 cut(s) 438
XapI RAATTY 4 cut(s) 328, 949, 1510, 1554
XceI RCATGY 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 1375
XmiI GTMKAC 1 cut(s) 885
XspI CTAG 3 cut(s) 1047, 1497, 1551
ZraI GACGTC 1 cut(s) 76
Zsp2I ATGCAT 2 cut(s) 1299, 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.