Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002854

Physical Location & Seq

Genomic Coordinates Reverse (-)

16311094 .. 16312014

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0177500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCTGATAAACTACATTAAGCGTAGTAGCCATCCTAAAGGAGCTTTGGAATTCAGAAAAACATTTATCGGTACGAAGCCAGCACCTAAGGTTGATGTCTATAGCTCTAGAGGGCCATTTCCAAGCTGCCCCCAAATTCTCAAACCAGACATTTTAGCCCCTGGAACATTAATCTTGGCATCATGGTCCACAACTAGTTCAGTATCTCTAGATCCGTCACACTCTTTGTTTAGTAACTTCAATCTTGCGACAGGGACTTCAATGTCGGCACCTCATGTGGCCGGTGTGGCTGCGCTTATCAAATCTGTGCATCCTGATTGGAGTCCTGCGGCCATTAGATCAGCTCTTATGACCACAGCGAATCCATTAGACAACACTCACAGCCCTATCAAAGACGCTTACGGAAACCTCATTGCAAGCCCTTTAGCCATTGGAGCAGGACACATCAATCCCAACAAGGCTCTTGATCCAGGACTAGTCTATGATGCAGCAGATGATGACTACATAAAGCTTCTATGTGCAATGAATTACACAGCAAAGCAGATACAAACTATCACAGGGTCCATTTACAGATGTGCCAATTGGTCCAATACTGAGCTTAATTACCCTTCTTTTATTGCTTACTTTAATAGTGATGGTTCAAATTCTGCTGCAAATATTGTCCAAGAGTTCAGGAGGACACTGACAAATGTGGGAGAGGAACAGTCATGTTATAGTGTTAATTTCACAGCCATGCCAGGTTTTAAACTGAAGGTGGAGCCACAGAGGTTGACGTTCAAGAAGAAGTACGAAAAGCGAAGTTATAAGCTGACTTTGGAAAGTCCAAAGTTCTTGAAAGAAGATGTGGTTCAGGGCTCACTTAGTTGGGTGGATGATGGTGGAAAATATAAAGTGAGGAGTCCAATAGCGGCACAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

306

Amino Acids

33.42

Weight (kDa)

9.18

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	27 - 126	1.6e-20	Subtilase family
fn3_6	PF17766	199 - 303	6.4e-26	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_2g12570 FvH4_2g12570 FvH4_2g12590
rosa_chinensis	RchiOBHm_Chr2g0111951 RchiOBHm_Chr6g0273101 RchiOBHm_Chr6g0273121 RchiOBHm_Chr6g0273151
rosa_laevigata	RLG00000013635 RLG00000013637 RLG00000013641 RLG00000013642 RLG00000013643 RLG00000017941
rosa_multiflora	Rmu_sc0000239.1_g000097 Rmu_sc0000239.1_g000109 Rmu_sc0000239.1_g000114 Rmu_sc0005679.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131960 Rroxscaffold_7G00195580 Rroxscaffold_7G00195630 Rroxscaffold_7G00195660
rosa_rugosa	Rorug02G0177500 Rorug06G0073000 Rorug06G0073100
rosa_samantha	Rh2CG233900 Rh2DG237500 Rh6BG191800 Rh6BG192000 Rh6CG191000 Rh6DG182600
rosa_wichuraiana	Rw2G017790 Rw6G016320 Rw6G016330 Rw6G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AasI	GACNNNNNNGTC	1 cut(s)	262
AccB1I	GGYRCC	1 cut(s)	268
AciI	CCGC	2 cut(s)	329, 908
AclWI	GGATC	2 cut(s)	206, 461
AcoI	YGGCCR	2 cut(s)	279, 330
AcsI	RAATTY	3 cut(s)	50, 135, 643
AcuI	CTGAAG	1 cut(s)	770
AfaI	GTAC	2 cut(s)	73, 788
AgsI	TTSAA	5 cut(s)	241, 261, 642, 778, 835
AhlI	ACTAGT	2 cut(s)	194, 475
AjnI	CCWGG	3 cut(s)	160, 469, 736
AluBI	AGCT	7 cut(s)	44, 105, 126, 344, 511, 598, 808
AluI	AGCT	7 cut(s)	44, 105, 126, 344, 511, 598, 808
AlwI	GGATC	2 cut(s)	206, 461
AoxI	GGCC	3 cut(s)	113, 279, 330
ApeKI	GCWGC	4 cut(s)	126, 290, 488, 650
ApoI	RAATTY	3 cut(s)	50, 135, 643
AseI	ATTAAT	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	4 cut(s)	113, 186, 561, 585
AvaII	GGWCC	3 cut(s)	186, 561, 585
AxyI	CCTNAGG	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	857
BbvI	GCAGC	4 cut(s)	113, 277, 500, 637
BccI	CCATC	3 cut(s)	39, 629, 869
BciT130I	CCWGG	3 cut(s)	162, 471, 738
BcuI	ACTAGT	2 cut(s)	194, 475
BfaI	CTAG	4 cut(s)	108, 195, 209, 476
BfmI	CTRYAG	1 cut(s)	100
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	6 cut(s)	127, 291, 330, 489, 651, 909
BlsI	GCNGC	6 cut(s)	128, 292, 331, 490, 652, 910
Bme1390I	CCNGG	3 cut(s)	162, 471, 738
Bme18I	GGWCC	3 cut(s)	186, 561, 585
BmgT120I	GGNCC	4 cut(s)	113, 186, 561, 585
BmiI	GGNNCC	3 cut(s)	270, 562, 759
BmrFI	CCNGG	3 cut(s)	162, 471, 738
BmsI	GCATC	3 cut(s)	188, 319, 475
BsaJI	CCNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	281
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	411, 528
BseBI	CCWGG	3 cut(s)	162, 471, 738
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	3 cut(s)	31, 310, 877
BseMI	GCAATG	2 cut(s)	411, 528
BseMII	CTCAG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	910
BseXI	GCAGC	4 cut(s)	113, 277, 500, 637
BshFI	GGCC	3 cut(s)	115, 281, 332
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	115, 281, 332
Bsp1286I	GDGCHC	1 cut(s)	857
Bsp143I	GATC	3 cut(s)	211, 338, 466
BspACI	CCGC	2 cut(s)	329, 908
BspANI	GGCC	3 cut(s)	115, 281, 332
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	3 cut(s)	270, 562, 759
BspPI	GGATC	2 cut(s)	206, 461
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	2 cut(s)	411, 528
BsrFI	RCCGGY	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	3 cut(s)	211, 338, 466
Bst2UI	CCWGG	3 cut(s)	162, 471, 738
Bst4CI	ACNGT	1 cut(s)	705
BstC8I	GCNNGC	2 cut(s)	81, 418
BstDEI	CTNAG	3 cut(s)	87, 594, 860
BstF5I	GGATG	3 cut(s)	31, 310, 877
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	3 cut(s)	214, 341, 469
BstMBI	GATC	3 cut(s)	211, 338, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 434
BstNI	CCWGG	3 cut(s)	162, 471, 738
BstSCI	CCNGG	3 cut(s)	160, 469, 736
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	4 cut(s)	113, 277, 500, 637
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	115, 281, 332
BtsCI	GGATG	3 cut(s)	31, 310, 877
BtsIMutI	CAGTG	1 cut(s)	680
Cac8I	GCNNGC	2 cut(s)	81, 418
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	4 cut(s)	113, 186, 561, 585
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	72, 787
CspCI	CAANNNNNGTGG	2 cut(s)	750, 785
CviAII	CATG	4 cut(s)	183, 275, 708, 733
CviQI	GTAC	2 cut(s)	72, 787
DdeI	CTNAG	3 cut(s)	87, 594, 860
DpnI	GATC	3 cut(s)	213, 340, 468
DpnII	GATC	3 cut(s)	211, 338, 466
DraI	TTTAAA	1 cut(s)	745
DrdI	GACNNNNNNGTC	1 cut(s)	262
DseDI	GACNNNNNNGTC	1 cut(s)	262
EaeI	YGGCCR	2 cut(s)	279, 330
Eco24I	GRGCYC	1 cut(s)	857
Eco47I	GGWCC	3 cut(s)	186, 561, 585
Eco57I	CTGAAG	1 cut(s)	770
Eco81I	CCTNAGG	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	3 cut(s)	160, 469, 736
EcoT38I	GRGCYC	1 cut(s)	857
FaeI	CATG	4 cut(s)	186, 278, 711, 736
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	4 cut(s)	182, 274, 707, 732
Fnu4HI	GCNGC	6 cut(s)	127, 291, 330, 489, 651, 909
FokI	GGATG	3 cut(s)	18, 297, 884
FriOI	GRGCYC	1 cut(s)	857
Fsp4HI	GCNGC	6 cut(s)	127, 291, 330, 489, 651, 909
FspBI	CTAG	4 cut(s)	108, 195, 209, 476
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	6 cut(s)	127, 291, 330, 489, 651, 909
HaeIII	GGCC	3 cut(s)	115, 281, 332
HapII	CCGG	1 cut(s)	282
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	4 cut(s)	186, 278, 711, 736
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	322, 361, 898
HpaII	CCGG	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	189, 771
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	7 cut(s)	108, 209, 314, 464, 673, 778, 832
Hpy8I	GTNNAC	2 cut(s)	189, 771
HpyAV	CCTTC	2 cut(s)	618, 745
HpyCH4III	ACNGT	1 cut(s)	705
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	5 cut(s)	310, 416, 488, 521, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 434
HpyF3I	CTNAG	3 cut(s)	87, 594, 860
HpySE526I	ACGT	1 cut(s)	773
Hsp92II	CATG	4 cut(s)	186, 278, 711, 736
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	3 cut(s)	211, 338, 466
LmnI	GCTCC	3 cut(s)	41, 434, 757
Lsp1109I	GCAGC	4 cut(s)	113, 277, 500, 637
LweI	GCATC	3 cut(s)	188, 319, 475
MaeI	CTAG	4 cut(s)	108, 195, 209, 476
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	2 cut(s)	216, 233
MalI	GATC	3 cut(s)	213, 340, 468
MboI	GATC	3 cut(s)	211, 338, 466
MboII	GAAGA	2 cut(s)	793, 851
MfeI	CAATTG	1 cut(s)	580
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	857
MluCI	AATT	7 cut(s)	50, 135, 526, 580, 601, 643, 721
MlyI	GAGTC	2 cut(s)	331, 907
MnlI	CCTC	7 cut(s)	104, 282, 419, 669, 691, 759, 888
MseI	TTAA	6 cut(s)	18, 170, 600, 627, 720, 744
MslI	CAYNNNNRTG	1 cut(s)	731
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	3 cut(s)	162, 471, 738
MunI	CAATTG	1 cut(s)	580
MvaI	CCWGG	3 cut(s)	162, 471, 738
MwoI	GCNNNNNNNGC	2 cut(s)	287, 434
NdeII	GATC	3 cut(s)	211, 338, 466
NlaIII	CATG	4 cut(s)	186, 278, 711, 736
NlaIV	GGNNCC	3 cut(s)	270, 562, 759
NmuCI	GTSAC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	6 cut(s)	128, 292, 331, 490, 652, 910
PleI	GAGTC	2 cut(s)	330, 906
PpsI	GAGTC	2 cut(s)	330, 906
PshBI	ATTAAT	1 cut(s)	170
PsiI	TTATAA	1 cut(s)	804
Psp6I	CCWGG	3 cut(s)	160, 469, 736
PspGI	CCWGG	3 cut(s)	160, 469, 736
PspN4I	GGNNCC	3 cut(s)	270, 562, 759
PspPI	GGNCC	4 cut(s)	113, 186, 561, 585
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	2 cut(s)	73, 788
RsaNI	GTAC	2 cut(s)	72, 787
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	6 cut(s)	18, 170, 600, 627, 720, 744
SatI	GCNGC	6 cut(s)	127, 291, 330, 489, 651, 909
Sau3AI	GATC	3 cut(s)	211, 338, 466
Sau96I	GGNCC	4 cut(s)	113, 186, 561, 585
SchI	GAGTC	2 cut(s)	331, 907
ScrFI	CCNGG	3 cut(s)	162, 471, 738
SduI	GDGCHC	1 cut(s)	857
SfaNI	GCATC	3 cut(s)	188, 319, 475
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	3 cut(s)	186, 561, 585
SmiMI	CAYNNNNRTG	1 cut(s)	731
SpeI	ACTAGT	2 cut(s)	194, 475
Sse9I	AATT	7 cut(s)	50, 135, 526, 580, 601, 643, 721
SsiI	CCGC	2 cut(s)	329, 908
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	4 cut(s)	108, 195, 209, 476
StyD4I	CCNGG	3 cut(s)	160, 469, 736
TaaI	ACNGT	1 cut(s)	705
TaiI	ACGT	1 cut(s)	776
TasI	AATT	7 cut(s)	50, 135, 526, 580, 601, 643, 721
TauI	GCSGC	2 cut(s)	332, 911
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	6 cut(s)	18, 170, 600, 627, 720, 744
Tru9I	TTAA	6 cut(s)	18, 170, 600, 627, 720, 744
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	4 cut(s)	126, 290, 488, 650
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	2 cut(s)	204, 417
TspRI	CASTG	1 cut(s)	687
VpaK11BI	GGWCC	3 cut(s)	186, 561, 585
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	3 cut(s)	50, 135, 643
XbaI	TCTAGA	2 cut(s)	107, 208
XspI	CTAG	4 cut(s)	108, 195, 209, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.