Lignin degradation and detoxification of lignin-derived products
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_2g12570 FvH4_2g12570 FvH4_2g12590 |
| rosa_chinensis | RchiOBHm_Chr2g0111951 RchiOBHm_Chr6g0273101 RchiOBHm_Chr6g0273121 RchiOBHm_Chr6g0273151 |
| rosa_laevigata | RLG00000013635 RLG00000013637 RLG00000013641 RLG00000013642 RLG00000013643 RLG00000017941 |
| rosa_multiflora | Rmu_sc0000239.1_g000097 Rmu_sc0000239.1_g000109 Rmu_sc0000239.1_g000114 Rmu_sc0005679.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00131960 Rroxscaffold_7G00195580 Rroxscaffold_7G00195630 Rroxscaffold_7G00195660 |
| rosa_rugosa | Rorug02G0177500 Rorug06G0073000 Rorug06G0073100 |
| rosa_samantha | Rh2CG233900 Rh2DG237500 Rh6BG191800 Rh6BG192000 Rh6CG191000 Rh6DG182600 |
| rosa_wichuraiana | Rw2G017790 Rw6G016320 Rw6G016330 Rw6G016380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 920 |
| AatII | GACGTC | 1 cut(s) | 2173 |
| Acc36I | ACCTGC | 1 cut(s) | 920 |
| AccBSI | CCGCTC | 2 cut(s) | 471, 728 |
| AccI | GTMKAC | 2 cut(s) | 734, 783 |
| AclWI | GGATC | 2 cut(s) | 295, 1277 |
| AcoI | YGGCCR | 5 cut(s) | 208, 383, 1675, 1697, 1871 |
| AcsI | RAATTY | 4 cut(s) | 9, 121, 847, 1408 |
| AcvI | CACGTG | 1 cut(s) | 194 |
| AcyI | GRCGYC | 4 cut(s) | 327, 356, 2156, 2170 |
| AdeI | CACNNNGTG | 1 cut(s) | 99 |
| AfaI | GTAC | 3 cut(s) | 710, 1130, 1154 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 233, 705, 1103, 1319, 1362, 1442, 1706, 1842, 1918 |
| AgeI | ACCGGT | 1 cut(s) | 2028 |
| AgsI | TTSAA | 8 cut(s) | 8, 29, 110, 437, 1060, 1145, 1549, 1864 |
| AjnI | CCWGG | 3 cut(s) | 112, 385, 583 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 707, 739 |
| Alw21I | GWGCWC | 2 cut(s) | 513, 1728 |
| Alw26I | GTCTC | 3 cut(s) | 880, 1244, 1758 |
| AlwI | GGATC | 2 cut(s) | 295, 1277 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 878 |
| Ama87I | CYCGRG | 3 cut(s) | 227, 1761, 2089 |
| ApeKI | GCWGC | 8 cut(s) | 644, 941, 1606, 1757, 1885, 2044, 2130, 2135 |
| ApoI | RAATTY | 4 cut(s) | 9, 121, 847, 1408 |
| AsiGI | ACCGGT | 1 cut(s) | 2028 |
| AsiSI | GCGATCGC | 1 cut(s) | 2142 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1859 |
| AspLEI | GCGC | 1 cut(s) | 2135 |
| AspS9I | GGNCC | 9 cut(s) | 80, 807, 920, 1433, 1532, 1924, 1937, 1952, 1986 |
| AsuC2I | CCSGG | 2 cut(s) | 1356, 1707 |
| AsuHPI | GGTGA | 6 cut(s) | 361, 901, 1126, 1825, 2018, 2059 |
| AsuII | TTCGAA | 2 cut(s) | 1520, 1960 |
| AsuNHI | GCTAGC | 1 cut(s) | 944 |
| AvaI | CYCGRG | 3 cut(s) | 227, 1761, 2089 |
| AvaII | GGWCC | 4 cut(s) | 80, 920, 1532, 1924 |
| BaeGI | GKGCMC | 1 cut(s) | 843 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 291, 324, 1068, 1101 |
| BalI | TGGCCA | 1 cut(s) | 385 |
| BanII | GRGCYC | 1 cut(s) | 1728 |
| BbrPI | CACGTG | 1 cut(s) | 194 |
| BbsI | GAAGAC | 3 cut(s) | 1032, 1571, 1802 |
| Bbv12I | GWGCWC | 2 cut(s) | 513, 1728 |
| BbvI | GCAGC | 8 cut(s) | 631, 928, 1618, 1744, 1897, 2031, 2142, 2147 |
| BccI | CCATC | 7 cut(s) | 71, 380, 707, 1194, 1317, 1340, 1670 |
| BceAI | ACGGC | 5 cut(s) | 223, 348, 457, 1252, 1914 |
| BciT130I | CCWGG | 3 cut(s) | 114, 387, 585 |
| BcnI | CCSGG | 2 cut(s) | 1356, 1707 |
| BcoDI | GTCTC | 3 cut(s) | 880, 1244, 1758 |
| BfaI | CTAG | 5 cut(s) | 464, 945, 1395, 1449, 2003 |
| BfmI | CTRYAG | 4 cut(s) | 37, 780, 1000, 2128 |
| BfuAI | ACCTGC | 1 cut(s) | 920 |
| BlpI | GCTNAGC | 1 cut(s) | 1902 |
| Bme1390I | CCNGG | 5 cut(s) | 114, 387, 585, 1356, 1707 |
| Bme18I | GGWCC | 4 cut(s) | 80, 920, 1532, 1924 |
| BmeT110I | CYCGRG | 3 cut(s) | 227, 1761, 2089 |
| BmgT120I | GGNCC | 9 cut(s) | 80, 807, 920, 1433, 1532, 1924, 1937, 1952, 1986 |
| BmiI | GGNNCC | 3 cut(s) | 921, 1435, 1534 |
| BmrFI | CCNGG | 5 cut(s) | 114, 387, 585, 1356, 1707 |
| BmrI | ACTGGG | 1 cut(s) | 621 |
| BmsI | GCATC | 4 cut(s) | 526, 548, 1145, 1204 |
| BmtI | GCTAGC | 1 cut(s) | 948 |
| BmuI | ACTGGG | 1 cut(s) | 621 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1166 |
| BpiI | GAAGAC | 3 cut(s) | 1032, 1571, 1802 |
| BpmI | CTGGAG | 3 cut(s) | 567, 1089, 1245 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1902 |
| Bpu14I | TTCGAA | 2 cut(s) | 1520, 1960 |
| BpuEI | CTTGAG | 1 cut(s) | 1712 |
| BpuMI | CCSGG | 2 cut(s) | 1356, 1707 |
| BsaAI | YACGTR | 1 cut(s) | 194 |
| BsaHI | GRCGYC | 4 cut(s) | 327, 356, 2156, 2170 |
| BsaI | GGTCTC | 1 cut(s) | 1244 |
| BsaJI | CCNNGG | 7 cut(s) | 68, 330, 386, 810, 1156, 1798, 1821 |
| BsaWI | WCCGGW | 3 cut(s) | 705, 1288, 2028 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 389, 419, 712, 742, 1243, 1273, 1485, 1515 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 233, 705, 1103, 1319, 1362, 1442, 1706, 1842, 1918 |
| Bse118I | RCCGGY | 4 cut(s) | 1048, 1954, 2028, 2144 |
| Bse1I | ACTGG | 4 cut(s) | 343, 367, 627, 1247 |
| Bse3DI | GCAATG | 1 cut(s) | 639 |
| BseBI | CCWGG | 3 cut(s) | 114, 387, 585 |
| BseDI | CCNNGG | 7 cut(s) | 68, 330, 386, 810, 1156, 1798, 1821 |
| BseGI | GGATG | 7 cut(s) | 82, 699, 826, 1186, 1328, 1332, 1831 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 233, 705, 1103, 1319, 1362, 1442, 1706, 1842, 1918 |
| BseMI | GCAATG | 1 cut(s) | 639 |
| BseMII | CTCAG | 4 cut(s) | 159, 812, 885, 2046 |
| BseNI | ACTGG | 4 cut(s) | 343, 367, 627, 1247 |
| BseSI | GKGCMC | 1 cut(s) | 843 |
| BseX3I | CGGCCG | 1 cut(s) | 1871 |
| BseXI | GCAGC | 8 cut(s) | 631, 928, 1618, 1744, 1897, 2031, 2142, 2147 |
| BsgI | GTGCAG | 1 cut(s) | 2030 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1874, 2142 |
| BshTI | ACCGGT | 1 cut(s) | 2028 |
| BsiEI | CGRYCG | 2 cut(s) | 1874, 2142 |
| BsiHKAI | GWGCWC | 2 cut(s) | 513, 1728 |
| BsiHKCI | CYCGRG | 3 cut(s) | 227, 1761, 2089 |
| BslFI | GGGAC | 2 cut(s) | 1174, 1780 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 233, 705, 1103, 1319, 1362, 1442, 1706, 1842, 1918 |
| BsmAI | GTCTC | 3 cut(s) | 880, 1244, 1758 |
| BsmFI | GGGAC | 2 cut(s) | 1174, 1780 |
| BsmI | GAATGC | 2 cut(s) | 1180, 1452 |
| Bso31I | GGTCTC | 1 cut(s) | 1244 |
| BsoBI | CYCGRG | 3 cut(s) | 227, 1761, 2089 |
| Bsp119I | TTCGAA | 2 cut(s) | 1520, 1960 |
| Bsp1286I | GDGCHC | 3 cut(s) | 513, 843, 1728 |
| Bsp143I | GATC | 5 cut(s) | 287, 1122, 1282, 2064, 2139 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1902 |
| Bsp19I | CCATGG | 1 cut(s) | 68 |
| BspCNI | CTCAG | 4 cut(s) | 158, 811, 884, 2047 |
| BspLI | GGNNCC | 3 cut(s) | 921, 1435, 1534 |
| BspMAI | CTGCAG | 1 cut(s) | 2132 |
| BspMI | ACCTGC | 1 cut(s) | 920 |
| BspOI | GCTAGC | 1 cut(s) | 948 |
| BspPI | GGATC | 2 cut(s) | 295, 1277 |
| BspQI | GCTCTTC | 1 cut(s) | 1616 |
| BspT104I | TTCGAA | 2 cut(s) | 1520, 1960 |
| BspTNI | GGTCTC | 1 cut(s) | 1244 |
| BsrBI | CCGCTC | 2 cut(s) | 471, 728 |
| BsrDI | GCAATG | 1 cut(s) | 639 |
| BsrFI | RCCGGY | 4 cut(s) | 1048, 1954, 2028, 2144 |
| BsrI | ACTGG | 4 cut(s) | 343, 367, 627, 1247 |
| BssAI | RCCGGY | 4 cut(s) | 1048, 1954, 2028, 2144 |
| BssECI | CCNNGG | 7 cut(s) | 68, 330, 386, 810, 1156, 1798, 1821 |
| BssMI | GATC | 5 cut(s) | 287, 1122, 1282, 2064, 2139 |
| BssNI | GRCGYC | 4 cut(s) | 327, 356, 2156, 2170 |
| BssT1I | CCWWGG | 4 cut(s) | 68, 810, 1156, 1821 |
| Bst2UI | CCWGG | 3 cut(s) | 114, 387, 585 |
| Bst4CI | ACNGT | 5 cut(s) | 202, 929, 1303, 1750, 1837 |
| Bst6I | CTCTTC | 2 cut(s) | 1616, 1850 |
| BstACI | GRCGYC | 4 cut(s) | 327, 356, 2156, 2170 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 536 |
| BstBAI | YACGTR | 1 cut(s) | 194 |
| BstBI | TTCGAA | 2 cut(s) | 1520, 1960 |
| BstDEI | CTNAG | 5 cut(s) | 145, 798, 871, 1902, 2055 |
| BstDSI | CCRYGG | 2 cut(s) | 68, 330 |
| BstF5I | GGATG | 7 cut(s) | 82, 699, 826, 1186, 1328, 1332, 1831 |
| BstHHI | GCGC | 1 cut(s) | 2135 |
| BstKTI | GATC | 5 cut(s) | 290, 1125, 1285, 2067, 2142 |
| BstMAI | GTCTC | 3 cut(s) | 880, 1244, 1758 |
| BstMBI | GATC | 5 cut(s) | 287, 1122, 1282, 2064, 2139 |
| BstMCI | CGRYCG | 2 cut(s) | 1874, 2142 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 169, 536, 1787, 2081, 2141 |
| BstNI | CCWGG | 3 cut(s) | 114, 387, 585 |
| BstNSI | RCATGY | 1 cut(s) | 176 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1166 |
| BstSCI | CCNGG | 5 cut(s) | 112, 385, 583, 1354, 1705 |
| BstSFI | CTRYAG | 4 cut(s) | 37, 780, 1000, 2128 |
| BstSLI | GKGCMC | 1 cut(s) | 843 |
| BstV1I | GCAGC | 8 cut(s) | 631, 928, 1618, 1744, 1897, 2031, 2142, 2147 |
| BstV2I | GAAGAC | 3 cut(s) | 1032, 1571, 1802 |
| BstZI | CGGCCG | 1 cut(s) | 1871 |
| BtgI | CCRYGG | 2 cut(s) | 68, 330 |
| BtsCI | GGATG | 7 cut(s) | 82, 699, 826, 1186, 1328, 1332, 1831 |
| BtsI | GCAGTG | 1 cut(s) | 2125 |
| BtsIMutI | CAGTG | 4 cut(s) | 360, 841, 1299, 2125 |
| BveI | ACCTGC | 1 cut(s) | 920 |
| CaiI | CAGNNNCTG | 1 cut(s) | 878 |
| CfoI | GCGC | 1 cut(s) | 2135 |
| Cfr10I | RCCGGY | 4 cut(s) | 1048, 1954, 2028, 2144 |
| Cfr13I | GGNCC | 9 cut(s) | 80, 807, 920, 1433, 1532, 1924, 1937, 1952, 1986 |
| CseI | GACGC | 4 cut(s) | 335, 345, 2107, 2164 |
| Csp6I | GTAC | 3 cut(s) | 709, 1129, 1153 |
| CspAI | ACCGGT | 1 cut(s) | 2028 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1379, 1414 |
| CviAII | CATG | 9 cut(s) | 44, 69, 173, 291, 745, 1202, 1479, 1637, 1679 |
| CviQI | GTAC | 3 cut(s) | 709, 1129, 1153 |
| DdeI | CTNAG | 5 cut(s) | 145, 798, 871, 1902, 2055 |
| DpnI | GATC | 5 cut(s) | 289, 1124, 1284, 2066, 2141 |
| DpnII | GATC | 5 cut(s) | 287, 1122, 1282, 2064, 2139 |
| DraIII | CACNNNGTG | 1 cut(s) | 99 |
| EaeI | YGGCCR | 5 cut(s) | 208, 383, 1675, 1697, 1871 |
| EagI | CGGCCG | 1 cut(s) | 1871 |
| Eam1104I | CTCTTC | 2 cut(s) | 1616, 1850 |
| EarI | CTCTTC | 2 cut(s) | 1616, 1850 |
| Ecl136II | GAGCTC | 1 cut(s) | 1726 |
| EclXI | CGGCCG | 1 cut(s) | 1871 |
| Eco130I | CCWWGG | 4 cut(s) | 68, 810, 1156, 1821 |
| Eco24I | GRGCYC | 1 cut(s) | 1728 |
| Eco31I | GGTCTC | 1 cut(s) | 1244 |
| Eco47I | GGWCC | 4 cut(s) | 80, 920, 1532, 1924 |
| Eco52I | CGGCCG | 1 cut(s) | 1871 |
| Eco53kI | GAGCTC | 1 cut(s) | 1726 |
| Eco72I | CACGTG | 1 cut(s) | 194 |
| Eco88I | CYCGRG | 3 cut(s) | 227, 1761, 2089 |
| EcoICRI | GAGCTC | 1 cut(s) | 1726 |
| EcoO109I | RGGNCCY | 1 cut(s) | 807 |
| EcoRI | GAATTC | 1 cut(s) | 1408 |
| EcoRII | CCWGG | 3 cut(s) | 112, 385, 583 |
| EcoT14I | CCWWGG | 4 cut(s) | 68, 810, 1156, 1821 |
| EcoT22I | ATGCAT | 3 cut(s) | 541, 1197, 1374 |
| EcoT38I | GRGCYC | 1 cut(s) | 1728 |
| ErhI | CCWWGG | 4 cut(s) | 68, 810, 1156, 1821 |
| FaeI | CATG | 9 cut(s) | 47, 72, 176, 294, 748, 1205, 1482, 1640, 1682 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1613, 1645 |
| FaqI | GGGAC | 2 cut(s) | 1174, 1780 |
| FatI | CATG | 9 cut(s) | 43, 68, 172, 290, 744, 1201, 1478, 1636, 1678 |
| FauI | CCCGC | 1 cut(s) | 908 |
| FblI | GTMKAC | 2 cut(s) | 734, 783 |
| FokI | GGATG | 7 cut(s) | 89, 686, 813, 1173, 1319, 1335, 1838 |
| FriOI | GRGCYC | 1 cut(s) | 1728 |
| FspBI | CTAG | 5 cut(s) | 464, 945, 1395, 1449, 2003 |
| GlaI | GCGC | 1 cut(s) | 2134 |
| GsuI | CTGGAG | 3 cut(s) | 567, 1089, 1245 |
| HgaI | GACGC | 4 cut(s) | 335, 345, 2107, 2164 |
| HhaI | GCGC | 1 cut(s) | 2135 |
| Hin1I | GRCGYC | 4 cut(s) | 327, 356, 2156, 2170 |
| Hin1II | CATG | 9 cut(s) | 47, 72, 176, 294, 748, 1205, 1482, 1640, 1682 |
| Hin6I | GCGC | 1 cut(s) | 2133 |
| HinP1I | GCGC | 1 cut(s) | 2133 |
| HincII | GTYRAC | 1 cut(s) | 735 |
| HindII | GTYRAC | 1 cut(s) | 735 |
| HinfI | GANTC | 7 cut(s) | 106, 366, 662, 861, 1338, 1589, 2096 |
| HphI | GGTGA | 6 cut(s) | 361, 901, 1126, 1825, 2018, 2059 |
| Hpy166II | GTNNAC | 8 cut(s) | 205, 360, 711, 735, 784, 883, 1153, 1297 |
| Hpy188III | TCNNGA | 7 cut(s) | 83, 1068, 1171, 1426, 1546, 1586, 2152 |
| Hpy8I | GTNNAC | 8 cut(s) | 205, 360, 711, 735, 784, 883, 1153, 1297 |
| Hpy99I | CGWCG | 4 cut(s) | 736, 1461, 2158, 2172 |
| HpyAV | CCTTC | 8 cut(s) | 149, 685, 759, 1484, 1516, 1704, 1875, 2086 |
| HpyCH4III | ACNGT | 5 cut(s) | 202, 929, 1303, 1750, 1837 |
| HpyCH4IV | ACGT | 5 cut(s) | 193, 306, 717, 1793, 2170 |
| HpyCH4V | TGCA | 9 cut(s) | 176, 539, 991, 1178, 1195, 1372, 1561, 2047, 2130 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 169, 536, 1787, 2081, 2141 |
| HpyF3I | CTNAG | 5 cut(s) | 145, 798, 871, 1902, 2055 |
| HpySE526I | ACGT | 5 cut(s) | 193, 306, 717, 1793, 2170 |
| Hsp92I | GRCGYC | 4 cut(s) | 327, 356, 2156, 2170 |
| Hsp92II | CATG | 9 cut(s) | 47, 72, 176, 294, 748, 1205, 1482, 1640, 1682 |
| HspAI | GCGC | 1 cut(s) | 2133 |
| KroI | GCCGGC | 1 cut(s) | 2144 |
| KroNI | GCCGGC | 1 cut(s) | 2146 |
| Kzo9I | GATC | 5 cut(s) | 287, 1122, 1282, 2064, 2139 |
| LguI | GCTCTTC | 1 cut(s) | 1616 |
| LmnI | GCTCC | 6 cut(s) | 410, 586, 676, 733, 1005, 1708 |
| Lsp1109I | GCAGC | 8 cut(s) | 631, 928, 1618, 1744, 1897, 2031, 2142, 2147 |
| LweI | GCATC | 4 cut(s) | 526, 548, 1145, 1204 |
| MaeI | CTAG | 5 cut(s) | 464, 945, 1395, 1449, 2003 |
| MaeII | ACGT | 5 cut(s) | 193, 306, 717, 1793, 2170 |
| MaeIII | GTNAC | 9 cut(s) | 189, 344, 559, 629, 718, 763, 907, 929, 1205 |
| MalI | GATC | 5 cut(s) | 289, 1124, 1284, 2066, 2141 |
| MbiI | CCGCTC | 2 cut(s) | 471, 728 |
| MboI | GATC | 5 cut(s) | 287, 1122, 1282, 2064, 2139 |
| MfeI | CAATTG | 2 cut(s) | 400, 1140 |
| MhlI | GDGCHC | 3 cut(s) | 513, 843, 1728 |
| MlsI | TGGCCA | 1 cut(s) | 385 |
| MluNI | TGGCCA | 1 cut(s) | 385 |
| MlyI | GAGTC | 2 cut(s) | 656, 2105 |
| MmeI | TCCRAC | 2 cut(s) | 54, 1285 |
| Mox20I | TGGCCA | 1 cut(s) | 385 |
| Mph1103I | ATGCAT | 3 cut(s) | 541, 1197, 1374 |
| MroNI | GCCGGC | 1 cut(s) | 2144 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1859 |
| MscI | TGGCCA | 1 cut(s) | 385 |
| MseI | TTAA | 4 cut(s) | 548, 803, 1010, 1503 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1200, 1483 |
| Msp20I | TGGCCA | 1 cut(s) | 385 |
| MspA1I | CMGCKG | 1 cut(s) | 2054 |
| MspR9I | CCNGG | 5 cut(s) | 114, 387, 585, 1356, 1707 |
| MunI | CAATTG | 2 cut(s) | 400, 1140 |
| Mva1269I | GAATGC | 2 cut(s) | 1180, 1452 |
| MvaI | CCWGG | 3 cut(s) | 114, 387, 585 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 169, 536, 1787, 2081, 2141 |
| NaeI | GCCGGC | 1 cut(s) | 2146 |
| NciI | CCSGG | 2 cut(s) | 1356, 1707 |
| NcoI | CCATGG | 1 cut(s) | 68 |
| NdeII | GATC | 5 cut(s) | 287, 1122, 1282, 2064, 2139 |
| NgoMIV | GCCGGC | 1 cut(s) | 2144 |
| NheI | GCTAGC | 1 cut(s) | 944 |
| NlaIII | CATG | 9 cut(s) | 47, 72, 176, 294, 748, 1205, 1482, 1640, 1682 |
| NlaIV | GGNNCC | 3 cut(s) | 921, 1435, 1534 |
| NmeAIII | GCCGAG | 5 cut(s) | 292, 532, 1747, 1899, 1932 |
| NmuCI | GTSAC | 4 cut(s) | 189, 344, 559, 907 |
| NsiI | ATGCAT | 3 cut(s) | 541, 1197, 1374 |
| NspI | RCATGY | 1 cut(s) | 176 |
| NspV | TTCGAA | 2 cut(s) | 1520, 1960 |
| PaeI | GCATGC | 1 cut(s) | 176 |
| PaeR7I | CTCGAG | 1 cut(s) | 2089 |
| PaqCI | CACCTGC | 1 cut(s) | 920 |
| PciSI | GCTCTTC | 1 cut(s) | 1616 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 303, 504, 675, 1904 |
| PctI | GAATGC | 2 cut(s) | 1180, 1452 |
| PdiI | GCCGGC | 1 cut(s) | 2146 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1859 |
| PfeI | GAWTC | 5 cut(s) | 106, 366, 861, 1338, 1589 |
| PfoI | TCCNGGA | 2 cut(s) | 1354, 1705 |
| PinAI | ACCGGT | 1 cut(s) | 2028 |
| Ple19I | CGATCG | 1 cut(s) | 2142 |
| PleI | GAGTC | 2 cut(s) | 656, 2104 |
| PmaCI | CACGTG | 1 cut(s) | 194 |
| PmlI | CACGTG | 1 cut(s) | 194 |
| PpsI | GAGTC | 2 cut(s) | 656, 2104 |
| Ppu21I | YACGTR | 1 cut(s) | 194 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1166 |
| Psp124BI | GAGCTC | 1 cut(s) | 1728 |
| Psp6I | CCWGG | 3 cut(s) | 112, 385, 583 |
| PspCI | CACGTG | 1 cut(s) | 194 |
| PspGI | CCWGG | 3 cut(s) | 112, 385, 583 |
| PspN4I | GGNNCC | 3 cut(s) | 921, 1435, 1534 |
| PspPI | GGNCC | 9 cut(s) | 80, 807, 920, 1433, 1532, 1924, 1937, 1952, 1986 |
| PspXI | VCTCGAGB | 1 cut(s) | 2089 |
| PstI | CTGCAG | 1 cut(s) | 2132 |
| PstNI | CAGNNNCTG | 1 cut(s) | 878 |
| PvuI | CGATCG | 1 cut(s) | 2142 |
| RgaI | GCGATCGC | 1 cut(s) | 2142 |
| RsaI | GTAC | 3 cut(s) | 710, 1130, 1154 |
| RsaNI | GTAC | 3 cut(s) | 709, 1129, 1153 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1200, 1483 |
| SacI | GAGCTC | 1 cut(s) | 1728 |
| SalI | GTCGAC | 1 cut(s) | 733 |
| SapI | GCTCTTC | 1 cut(s) | 1616 |
| SaqAI | TTAA | 4 cut(s) | 548, 803, 1010, 1503 |
| Sau3AI | GATC | 5 cut(s) | 287, 1122, 1282, 2064, 2139 |
| Sau96I | GGNCC | 9 cut(s) | 80, 807, 920, 1433, 1532, 1924, 1937, 1952, 1986 |
| SchI | GAGTC | 2 cut(s) | 656, 2105 |
| ScrFI | CCNGG | 5 cut(s) | 114, 387, 585, 1356, 1707 |
| SduI | GDGCHC | 3 cut(s) | 513, 843, 1728 |
| SfaAI | GCGATCGC | 1 cut(s) | 2142 |
| SfaNI | GCATC | 4 cut(s) | 526, 548, 1145, 1204 |
| SfcI | CTRYAG | 4 cut(s) | 37, 780, 1000, 2128 |
| Sfr274I | CTCGAG | 1 cut(s) | 2089 |
| SfuI | TTCGAA | 2 cut(s) | 1520, 1960 |
| SgfI | GCGATCGC | 1 cut(s) | 2142 |
| SgrAI | CRCCGGYG | 2 cut(s) | 1048, 2028 |
| SinI | GGWCC | 4 cut(s) | 80, 920, 1532, 1924 |
| SlaI | CTCGAG | 1 cut(s) | 2089 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1200, 1483 |
| SmlI | CTYRAG | 2 cut(s) | 1727, 2089 |
| SmoI | CTYRAG | 2 cut(s) | 1727, 2089 |
| SphI | GCATGC | 1 cut(s) | 176 |
| SspMI | CTAG | 5 cut(s) | 464, 945, 1395, 1449, 2003 |
| SstI | GAGCTC | 1 cut(s) | 1728 |
| StyD4I | CCNGG | 5 cut(s) | 112, 385, 583, 1354, 1705 |
| StyI | CCWWGG | 4 cut(s) | 68, 810, 1156, 1821 |
| TaaI | ACNGT | 5 cut(s) | 202, 929, 1303, 1750, 1837 |
| TaiI | ACGT | 5 cut(s) | 196, 309, 720, 1796, 2173 |
| TauI | GCSGC | 3 cut(s) | 1677, 1790, 2084 |
| TfiI | GAWTC | 5 cut(s) | 106, 366, 861, 1338, 1589 |
| Tru1I | TTAA | 4 cut(s) | 548, 803, 1010, 1503 |
| Tru9I | TTAA | 4 cut(s) | 548, 803, 1010, 1503 |
| TscAI | CASTG | 4 cut(s) | 367, 841, 1306, 2132 |
| TseFI | GTSAC | 4 cut(s) | 189, 344, 559, 907 |
| TseI | GCWGC | 8 cut(s) | 644, 941, 1606, 1757, 1885, 2044, 2130, 2135 |
| Tsp45I | GTSAC | 4 cut(s) | 189, 344, 559, 907 |
| TspDTI | ATGAA | 5 cut(s) | 165, 426, 494, 498, 1421 |
| TspGWI | ACGGA | 2 cut(s) | 720, 2098 |
| TspRI | CASTG | 4 cut(s) | 367, 841, 1306, 2132 |
| VpaK11BI | GGWCC | 4 cut(s) | 80, 920, 1532, 1924 |
| XapI | RAATTY | 4 cut(s) | 9, 121, 847, 1408 |
| XceI | RCATGY | 1 cut(s) | 176 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1273 |
| XhoI | CTCGAG | 1 cut(s) | 2089 |
| XmiI | GTMKAC | 2 cut(s) | 734, 783 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1859 |
| XspI | CTAG | 5 cut(s) | 464, 945, 1395, 1449, 2003 |
| ZraI | GACGTC | 1 cut(s) | 2171 |
| Zsp2I | ATGCAT | 3 cut(s) | 541, 1197, 1374 |