Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002854

Physical Location & Seq

Genomic Coordinates Reverse (-)

38197366 .. 38200742

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00195660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGCTACTCCTGTCCATGGCTTACAACGTTCATCGCTATAGCTTTATCGCATGGAGTAAAGCAGCCACAAAACCCATGGTCAGATGGTCCAGAAAACATTACGCAATGTCCTATTCAGCCAGGAAAAAACTTTACCTATGAAGTCATATTTTCAGATGAAGAAGGAACTCTATGGTGGCATGCACACAGTGACTGGTCACGTGCCACCGTTCATGGCCCTATTGTTATTTTACCCGAGAGAGGAAAATCTTATCCATTTCCCAAACCTTATGCTGAGAAAACCATTGTGCTCGCTTCATGGTTCAATACTGACGTGAAGGAACTAATCGATGACGCCATGGCAATCGGAGGAGACCCAGATCCGTCCGATGCTTTCACCATCAATGGCTGGCCAGGAGCTTTATATAACTGTTCCAATGAAACTATATCTCGTCTGCCAGTTGTGTTCGGAAAGACCTACCTGCTTCGCCTAGTCAGTGCCGTCATGAACGAAGAAATGTTTTTGGCAATTGCCGGACACAACTTCACGGTGGTGGCTCAAGATGATAACTTCACAAGCAAGATAAAGGCCTTGGCAAGCAGGGACCATCCAATTAGTGTGCCGAAAAATGTTACCAAACAAATCCTCATCACAGTTTCTGTGAATCAGCTACCTTGTGAACTTGGTGCTGGCTTATGTGGTGGTCCAAATGGTAATAGGATATCTGCCAGCTTGAACAATATCAGTTTTGATACCCCAACCACTGATATACTGCAAGCATACTACAGGAGTTTACCTAATGTCTTCGACAGTGATTTCCCGGATCAACCGCCACTTTTCTTTAACTTCTCAGGGGTTAATTCATCAACTTATTTGTTACCAGAAGTCGGGACAAAGGTGTTATTGATCGAGTATGGGGCATCAGTTGAACTTGTGTTCCAAGGGACTAACGTCGGAAATCCAGAAAACCATCCAATGCATCTGCATGGCTACAGCTTCTATGTTGTTGGATCAGCTTATGGAAACTGGAATGAGACAACTTCTCCGGCCACTTACAACTTGATCGATCCACCAGCGGTCAACACTGTCGGAGTTCCTAAGAATGGATGGACTGCCATTCGCTTTGTTGCCGATAATCCTGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

376

Amino Acids

41.18

Weight (kDa)

4.97

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	18 - 80	4.6e-21	Multicopper oxidase
Cu-oxidase	PF00394	94 - 188	1.9e-17	Multicopper oxidase
Cu-oxidase_2	PF07731	268 - 375	5.9e-26	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_1g20010 FvH4_2g12570 FvH4_2g12570 FvH4_2g12590
rosa_chinensis	RchiOBHm_Chr2g0111951 RchiOBHm_Chr6g0273101 RchiOBHm_Chr6g0273121 RchiOBHm_Chr6g0273151
rosa_laevigata	RLG00000013635 RLG00000013637 RLG00000013641 RLG00000013642 RLG00000013643 RLG00000017941
rosa_multiflora	Rmu_sc0000239.1_g000097 Rmu_sc0000239.1_g000109 Rmu_sc0000239.1_g000114 Rmu_sc0005679.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131960 Rroxscaffold_7G00195580 Rroxscaffold_7G00195630 Rroxscaffold_7G00195660
rosa_rugosa	Rorug02G0177500 Rorug06G0073000 Rorug06G0073100
rosa_samantha	Rh2CG233900 Rh2DG237500 Rh6BG191800 Rh6BG192000 Rh6CG191000 Rh6DG182600
rosa_wichuraiana	Rw2G017790 Rw6G016320 Rw6G016330 Rw6G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	471
AciI	CCGC	2 cut(s)	812, 1058
AclI	AACGTT	1 cut(s)	29
AclWI	GGATC	4 cut(s)	356, 813, 1000, 1043
AcoI	YGGCCR	2 cut(s)	392, 1029
AcvI	CACGTG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	336
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	1126
AfiI	CCNNNNNNNGG	4 cut(s)	18, 242, 869, 1085
AgsI	TTSAA	3 cut(s)	307, 718, 911
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	3 cut(s)	121, 394, 1120
AleI	CACNNNNGTG	1 cut(s)	533
AloI	GAACNNNNNNTCC	2 cut(s)	903, 935
AluBI	AGCT	6 cut(s)	44, 401, 652, 714, 978, 998
AluI	AGCT	6 cut(s)	44, 401, 652, 714, 978, 998
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	348, 1010
AlwI	GGATC	4 cut(s)	356, 813, 1000, 1043
AlwNI	CAGNNNCTG	2 cut(s)	195, 641
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	4 cut(s)	217, 392, 570, 1029
ApeKI	GCWGC	1 cut(s)	64
AspS9I	GGNCC	4 cut(s)	89, 218, 586, 686
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	3 cut(s)	89, 586, 686
BalI	TGGCCA	1 cut(s)	394
BbrPI	CACGTG	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	778
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	5 cut(s)	80, 389, 597, 960, 1083
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	3 cut(s)	123, 396, 1122
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	2 cut(s)	348, 1010
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	3 cut(s)	39, 766, 973
BfuAI	ACCTGC	1 cut(s)	471
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	4 cut(s)	123, 396, 803, 1122
Bme18I	GGWCC	3 cut(s)	89, 586, 686
BmeT110I	CYCGRG	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	4 cut(s)	89, 218, 586, 686
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	4 cut(s)	123, 396, 803, 1122
BmsI	GCATC	3 cut(s)	361, 911, 970
BoxI	GACNNNNGTC	1 cut(s)	932
BpiI	GAAGAC	1 cut(s)	778
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	803
Bsa29I	ATCGAT	2 cut(s)	330, 1047
BsaAI	YACGTR	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	5 cut(s)	17, 77, 339, 573, 922
BsaXI	ACNNNNNCTCC	2 cut(s)	1009, 1039
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 242, 869, 1085
Bse1I	ACTGG	3 cut(s)	200, 440, 1013
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	3 cut(s)	123, 396, 1122
BseCI	ATCGAT	2 cut(s)	330, 1047
BseDI	CCNNGG	5 cut(s)	17, 77, 339, 573, 922
BseGI	GGATG	3 cut(s)	589, 952, 1094
BseLI	CCNNNNNNNGG	4 cut(s)	18, 242, 869, 1085
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	2 cut(s)	267, 846
BseNI	ACTGG	3 cut(s)	200, 440, 1013
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	4 cut(s)	219, 394, 572, 1031
BshVI	ATCGAT	2 cut(s)	330, 1047
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	3 cut(s)	516, 803, 1028
BslFI	GGGAC	3 cut(s)	599, 886, 940
BslI	CCNNNNNNNGG	4 cut(s)	18, 242, 869, 1085
BsmAI	GTCTC	2 cut(s)	348, 1010
BsmFI	GGGAC	3 cut(s)	599, 886, 940
BsnI	GGCC	4 cut(s)	219, 394, 572, 1031
Bso31I	GGTCTC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	6 cut(s)	361, 805, 888, 992, 1044, 1048
Bsp19I	CCATGG	3 cut(s)	17, 77, 339
BspACI	CCGC	2 cut(s)	812, 1058
BspANI	GGCC	4 cut(s)	219, 394, 572, 1031
BspCNI	CTCAG	2 cut(s)	268, 845
BspDI	ATCGAT	2 cut(s)	330, 1047
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	587
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	4 cut(s)	356, 813, 1000, 1043
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	3 cut(s)	200, 440, 1013
BssECI	CCNNGG	5 cut(s)	17, 77, 339, 573, 922
BssMI	GATC	6 cut(s)	361, 805, 888, 992, 1044, 1048
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	5 cut(s)	17, 77, 339, 573, 922
Bst2UI	CCWGG	3 cut(s)	123, 396, 1122
Bst4CI	ACNGT	7 cut(s)	191, 211, 413, 532, 637, 794, 1069
BstACI	GRCGYC	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	7 cut(s)	183, 294, 392, 580, 673, 712, 759
BstDEI	CTNAG	3 cut(s)	276, 832, 1080
BstDSI	CCRYGG	3 cut(s)	17, 77, 339
BstF5I	GGATG	3 cut(s)	589, 952, 1094
BstKTI	GATC	6 cut(s)	364, 808, 891, 995, 1047, 1051
BstMAI	GTCTC	2 cut(s)	348, 1010
BstMBI	GATC	6 cut(s)	361, 805, 888, 992, 1044, 1048
BstNI	CCWGG	3 cut(s)	123, 396, 1122
BstNSI	RCATGY	1 cut(s)	185
BstPAI	GACNNNNGTC	1 cut(s)	932
BstSCI	CCNGG	4 cut(s)	121, 394, 801, 1120
BstSFI	CTRYAG	3 cut(s)	39, 766, 973
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	778
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
Bsu15I	ATCGAT	2 cut(s)	330, 1047
BsuRI	GGCC	4 cut(s)	219, 394, 572, 1031
BsuTUI	ATCGAT	2 cut(s)	330, 1047
BtgI	CCRYGG	3 cut(s)	17, 77, 339
BtgZI	GCGATG	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	589, 952, 1094
BtsIMutI	CAGTG	5 cut(s)	196, 484, 744, 799, 1065
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	7 cut(s)	183, 294, 392, 580, 673, 712, 759
CaiI	CAGNNNCTG	2 cut(s)	195, 641
CciI	TCATGA	1 cut(s)	486
Cfr13I	GGNCC	4 cut(s)	89, 218, 586, 686
ClaI	ATCGAT	2 cut(s)	330, 1047
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	1125
CviAII	CATG	9 cut(s)	18, 53, 78, 182, 215, 300, 340, 487, 968
CviQI	GTAC	1 cut(s)	1125
DdeI	CTNAG	3 cut(s)	276, 832, 1080
DpnI	GATC	6 cut(s)	363, 807, 890, 994, 1046, 1050
DpnII	GATC	6 cut(s)	361, 805, 888, 992, 1044, 1048
DraIII	CACNNNGTG	1 cut(s)	191
EaeI	YGGCCR	2 cut(s)	392, 1029
Eco130I	CCWWGG	5 cut(s)	17, 77, 339, 573, 922
Eco147I	AGGCCT	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	705
Eco47I	GGWCC	3 cut(s)	89, 586, 686
Eco72I	CACGTG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	121, 394, 1120
EcoRV	GATATC	1 cut(s)	705
EcoT14I	CCWWGG	5 cut(s)	17, 77, 339, 573, 922
EcoT22I	ATGCAT	1 cut(s)	963
ErhI	CCWWGG	5 cut(s)	17, 77, 339, 573, 922
FaeI	CATG	9 cut(s)	21, 56, 81, 185, 218, 303, 343, 490, 971
FaqI	GGGAC	3 cut(s)	599, 886, 940
FatI	CATG	9 cut(s)	17, 52, 77, 181, 214, 299, 339, 486, 967
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	3 cut(s)	576, 939, 1101
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	4 cut(s)	219, 394, 572, 1031
HapII	CCGG	3 cut(s)	516, 803, 1028
HgaI	GACGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	9 cut(s)	21, 56, 81, 185, 218, 303, 343, 490, 971
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HinfI	GANTC	1 cut(s)	646
HpaII	CCGG	3 cut(s)	516, 803, 1028
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	3 cut(s)	662, 776, 1063
Hpy188I	TCNGA	7 cut(s)	85, 157, 350, 370, 452, 938, 1073
Hpy188III	TCNNGA	5 cut(s)	92, 487, 542, 871, 944
Hpy8I	GTNNAC	3 cut(s)	662, 776, 1063
Hpy99I	CGWCG	1 cut(s)	938
HpyAV	CCTTC	2 cut(s)	158, 313
HpyCH4III	ACNGT	7 cut(s)	191, 211, 413, 532, 637, 794, 1069
HpyCH4IV	ACGT	4 cut(s)	29, 202, 315, 933
HpyCH4V	TGCA	4 cut(s)	185, 757, 961, 967
HpyF3I	CTNAG	3 cut(s)	276, 832, 1080
HpySE526I	ACGT	4 cut(s)	29, 202, 315, 933
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	9 cut(s)	21, 56, 81, 185, 218, 303, 343, 490, 971
Kzo9I	GATC	6 cut(s)	361, 805, 888, 992, 1044, 1048
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	3 cut(s)	361, 911, 970
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	4 cut(s)	29, 202, 315, 933
MaeIII	GTNAC	4 cut(s)	191, 198, 613, 858
MalI	GATC	6 cut(s)	363, 807, 890, 994, 1046, 1050
MboI	GATC	6 cut(s)	361, 805, 888, 992, 1044, 1048
MboII	GAAGA	3 cut(s)	173, 506, 778
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	394
MluCI	AATT	3 cut(s)	510, 594, 841
MluNI	TGGCCA	1 cut(s)	394
MmeI	TCCRAC	3 cut(s)	916, 970, 1051
MnlI	CCTC	3 cut(s)	236, 344, 638
Mox20I	TGGCCA	1 cut(s)	394
Mph1103I	ATGCAT	1 cut(s)	963
MscI	TGGCCA	1 cut(s)	394
MseI	TTAA	2 cut(s)	825, 840
MslI	CAYNNNNRTG	2 cut(s)	533, 966
Msp20I	TGGCCA	1 cut(s)	394
MspA1I	CMGCKG	1 cut(s)	1058
MspI	CCGG	3 cut(s)	516, 803, 1028
MspR9I	CCNGG	4 cut(s)	123, 396, 803, 1122
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	3 cut(s)	123, 396, 1122
NciI	CCSGG	1 cut(s)	803
NcoI	CCATGG	3 cut(s)	17, 77, 339
NdeII	GATC	6 cut(s)	361, 805, 888, 992, 1044, 1048
NlaIII	CATG	9 cut(s)	21, 56, 81, 185, 218, 303, 343, 490, 971
NlaIV	GGNNCC	1 cut(s)	587
NmuCI	GTSAC	2 cut(s)	191, 198
NsiI	ATGCAT	1 cut(s)	963
NspI	RCATGY	1 cut(s)	185
OliI	CACNNNNGTG	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	185
PagI	TCATGA	1 cut(s)	486
PceI	AGGCCT	1 cut(s)	572
PfeI	GAWTC	1 cut(s)	646
PfoI	TCCNGGA	1 cut(s)	801
PkrI	GCNGC	1 cut(s)	66
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	203
PshAI	GACNNNNGTC	1 cut(s)	932
Psp1406I	AACGTT	1 cut(s)	29
Psp6I	CCWGG	3 cut(s)	121, 394, 1120
PspCI	CACGTG	1 cut(s)	203
PspGI	CCWGG	3 cut(s)	121, 394, 1120
PspN4I	GGNNCC	1 cut(s)	587
PspPI	GGNCC	4 cut(s)	89, 218, 586, 686
PstNI	CAGNNNCTG	2 cut(s)	195, 641
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	1126
RsaNI	GTAC	1 cut(s)	1125
RseI	CAYNNNNRTG	2 cut(s)	533, 966
SaqAI	TTAA	2 cut(s)	825, 840
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	6 cut(s)	361, 805, 888, 992, 1044, 1048
Sau96I	GGNCC	4 cut(s)	89, 218, 586, 686
ScrFI	CCNGG	4 cut(s)	123, 396, 803, 1122
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	3 cut(s)	361, 911, 970
SfcI	CTRYAG	3 cut(s)	39, 766, 973
SinI	GGWCC	3 cut(s)	89, 586, 686
SmiMI	CAYNNNNRTG	2 cut(s)	533, 966
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	3 cut(s)	510, 594, 841
SseBI	AGGCCT	1 cut(s)	572
SsiI	CCGC	2 cut(s)	812, 1058
SspMI	CTAG	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	572
StyD4I	CCNGG	4 cut(s)	121, 394, 801, 1120
StyI	CCWWGG	5 cut(s)	17, 77, 339, 573, 922
TaaI	ACNGT	7 cut(s)	191, 211, 413, 532, 637, 794, 1069
TaiI	ACGT	4 cut(s)	32, 205, 318, 936
TaqI	TCGA	4 cut(s)	330, 789, 891, 1047
TasI	AATT	3 cut(s)	510, 594, 841
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	2 cut(s)	825, 840
Tru9I	TTAA	2 cut(s)	825, 840
TscAI	CASTG	5 cut(s)	196, 484, 751, 799, 1072
TseFI	GTSAC	2 cut(s)	191, 198
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	2 cut(s)	191, 198
TspDTI	ATGAA	8 cut(s)	22, 156, 174, 203, 288, 435, 503, 834
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	5 cut(s)	196, 484, 751, 799, 1072
VpaK11BI	GGWCC	3 cut(s)	89, 586, 686
XceI	RCATGY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
XspI	CTAG	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.