Rorug06G0073100

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002854
Physical Location & Seq
Reverse (-)
9725457 .. 9728432
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0073100.1

Sequence Viewer

Length: 900 bp
ATGTCATATTATCAATTTCCAACCCAGTCTTCTTCGTCTCCGTCTCCGTCTCCTTACTCCTCTTTTCCCATGTCGGTTTCTGGTGGTATTCAAGGCCAGCTTCTTGAGGTCACTGTTGTTGGGTGCAATAAGTTGAAAGATACAGAATGGATTTCGCGGCAAGATCCCTACGTTTGTGTTGAATATGCTAACTCCAAGCACAGAACAAGAACGCATACTGACGGAGGTAGAAACCCTACATTCCAAGAGAAGTTCGTGATTCCTCTAATTGAAGGGCTTAGGGAGATGAATGTTGCTGTCTGGAACAGCAACAGTGTCACATATGACGACTTTATTGGCGAGGGAAAAGTTCACCTTCAGAAGGTTCTGTCTCAGGGTTACGATGATGGTACTTGGCCACTTCAGACTAAAACGGGCAGATATGCTGGAGAAGTGCGGCTTATAATGCATTACTCGAAGCCTAATATAAGTGCAAAGCCTAATAAACCGGCAGCAGGCTATGCCCCATCTGCACCACCTTATGGAGCACCACCTGCACCGCAAGCTCATATGTACTCAACTGCCCCTCCAGCATCTGCGTATGCACCACCACCTCAAATGTACGCACCACCTCCACCAGCAGCTTACCCAGCTCCATCTCCCTATCCTTCGTATTCACCTACTCCTTCATATCCACCCAATCCAGCACCAGCTGCGTATCCACCTAATCCCGCACCAGGAGGATATCCCCCATCCCCGTACGGTGCCCCTCCACCAGCTGCATATCCTCCTGCACCATACCCACCATCTTCAACTTATCCTCCTCCTCCATCATCTACATATCCACCACCTCCACAAGCCTCATCGTTTTACCCTCCACCTCAAGGTCCGTATGGAGTATATCCACCACCACCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

299

Amino Acids

32.13

Weight (kDa)

8.29

Isoelectric Point (pI)

87.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 34 - 126 6.6e-16 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 541
AccB1I GGYRCC 1 cut(s) 743
AccB7I CCANNNNNTGG 1 cut(s) 521
AccII CGCG 1 cut(s) 157
AciI CCGC 4 cut(s) 157, 436, 539, 711
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 395
AcuI CTGAAG 2 cut(s) 341, 386
AfaI GTAC 4 cut(s) 391, 554, 602, 740
AfiI CCNNNNNNNGG 5 cut(s) 361, 494, 521, 716, 863
AgsI TTSAA 5 cut(s) 92, 136, 182, 272, 792
AjnI CCWGG 1 cut(s) 715
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 6 cut(s) 100, 545, 623, 632, 692, 758
AluI AGCT 6 cut(s) 100, 545, 623, 632, 692, 758
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 4 cut(s) 42, 48, 54, 375
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 575
AoxI GGCC 2 cut(s) 94, 395
ApeKI GCWGC 4 cut(s) 491, 620, 692, 758
AspS9I GGNCC 1 cut(s) 866
AsuHPI GGTGA 2 cut(s) 344, 648
AvaII GGWCC 1 cut(s) 866
BaeGI GKGCMC 1 cut(s) 748
BalI TGGCCA 1 cut(s) 397
BanI GGYRCC 1 cut(s) 743
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 4 cut(s) 503, 632, 679, 745
BccI CCATC 6 cut(s) 380, 514, 643, 739, 793, 817
BciT130I CCWGG 1 cut(s) 717
BciVI GTATCC 1 cut(s) 708
BcoDI GTCTC 4 cut(s) 42, 48, 54, 375
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 1 cut(s) 708
BisI GCNGC 6 cut(s) 158, 437, 492, 621, 693, 759
BlsI GCNGC 6 cut(s) 159, 438, 493, 622, 694, 760
Bme1390I CCNGG 1 cut(s) 717
Bme18I GGWCC 1 cut(s) 866
BmgT120I GGNCC 1 cut(s) 866
BmiI GGNNCC 1 cut(s) 745
BmrFI CCNGG 1 cut(s) 717
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 581
BmuI ACTGGG 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 2 cut(s) 447, 552
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 2 cut(s) 125, 846
BsaXI ACNNNNNCTCC 4 cut(s) 550, 580, 784, 814
Bsc4I CCNNNNNNNGG 5 cut(s) 361, 494, 521, 716, 863
Bse118I RCCGGY 1 cut(s) 487
Bse1I ACTGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 717
BseGI GGATG 1 cut(s) 731
BseLI CCNNNNNNNGG 5 cut(s) 361, 494, 521, 716, 863
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 3 cut(s) 49, 792, 795
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 4 cut(s) 503, 632, 679, 745
BseYI CCCAGC 1 cut(s) 628
BsgI GTGCAG 3 cut(s) 495, 519, 756
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 2 cut(s) 96, 397
BshNI GGYRCC 1 cut(s) 743
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 1 cut(s) 488
BsiWI CGTACG 1 cut(s) 738
BslI CCNNNNNNNGG 5 cut(s) 361, 494, 521, 716, 863
BsmAI GTCTC 4 cut(s) 42, 48, 54, 375
BsmBI CGTCTC 3 cut(s) 42, 48, 54
BsnI GGCC 2 cut(s) 96, 397
Bsp1286I GDGCHC 2 cut(s) 529, 748
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 4 cut(s) 157, 436, 539, 711
BspANI GGCC 2 cut(s) 96, 397
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 743
BsrFI RCCGGY 1 cut(s) 487
BsrI ACTGG 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 487
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 3 cut(s) 115, 314, 743
BstAPI GCANNNNNTGC 3 cut(s) 500, 533, 692
BstC8I GCNNGC 3 cut(s) 98, 496, 543
BstDEI CTNAG 2 cut(s) 278, 372
BstENI CCTNNNNNAGG 1 cut(s) 359
BstF5I GGATG 1 cut(s) 731
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 4 cut(s) 42, 48, 54, 375
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 8 cut(s) 445, 500, 509, 533, 542, 569, 629, 692
BstNI CCWGG 1 cut(s) 717
BstSCI CCNGG 1 cut(s) 715
BstSLI GKGCMC 1 cut(s) 748
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 4 cut(s) 503, 632, 679, 745
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuI GTATCC 1 cut(s) 708
BsuRI GGCC 2 cut(s) 96, 397
BtsCI GGATG 1 cut(s) 731
BtsIMutI CAGTG 2 cut(s) 111, 319
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 3 cut(s) 98, 496, 543
CaiI CAGNNNCTG 1 cut(s) 575
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 866
Csp6I GTAC 4 cut(s) 390, 553, 601, 739
CviAII CATG 1 cut(s) 70
CviQI GTAC 4 cut(s) 390, 553, 601, 739
DdeI CTNAG 2 cut(s) 278, 372
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 395
Eco32I GATATC 1 cut(s) 725
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 2 cut(s) 341, 386
EcoNI CCTNNNNNAGG 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 715
EcoRV GATATC 1 cut(s) 725
EcoT22I ATGCAT 1 cut(s) 450
Esp3I CGTCTC 3 cut(s) 42, 48, 54
FaeI CATG 1 cut(s) 73
FalI AAGNNNNNCTT 6 cut(s) 84, 116, 339, 371, 423, 455
FatI CATG 1 cut(s) 69
FauI CCCGC 1 cut(s) 718
FauNDI CATATG 2 cut(s) 322, 549
Fnu4HI GCNGC 6 cut(s) 158, 437, 492, 621, 693, 759
FokI GGATG 1 cut(s) 718
Fsp4HI GCNGC 6 cut(s) 158, 437, 492, 621, 693, 759
GluI GCNGC 6 cut(s) 158, 437, 492, 621, 693, 759
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 2 cut(s) 447, 552
HaeIII GGCC 2 cut(s) 96, 397
HapII CCGG 1 cut(s) 488
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 259
HpaII CCGG 1 cut(s) 488
HphI GGTGA 2 cut(s) 344, 648
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 2 cut(s) 360, 405
Hpy188III TCNNGA 3 cut(s) 104, 256, 301
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 5 cut(s) 266, 355, 365, 657, 675
HpyCH4III ACNGT 3 cut(s) 115, 314, 743
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 8 cut(s) 126, 448, 473, 512, 536, 584, 761, 773
HpyF10VI GCNNNNNNNGC 8 cut(s) 445, 500, 509, 533, 542, 569, 629, 692
HpyF3I CTNAG 2 cut(s) 278, 372
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 524, 637
Lsp1109I GCAGC 4 cut(s) 503, 632, 679, 745
LweI GCATC 1 cut(s) 581
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 109, 316, 377
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 21, 24, 780
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 529, 748
MlsI TGGCCA 1 cut(s) 397
MluCI AATT 2 cut(s) 14, 267
MluNI TGGCCA 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 44
Mox20I TGGCCA 1 cut(s) 397
Mph1103I ATGCAT 1 cut(s) 450
MscI TGGCCA 1 cut(s) 397
Msp20I TGGCCA 1 cut(s) 397
MspA1I CMGCKG 2 cut(s) 692, 758
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 717
MvaI CCWGG 1 cut(s) 717
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 8 cut(s) 445, 500, 509, 533, 542, 569, 629, 692
NdeI CATATG 2 cut(s) 322, 549
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 745
NmuCI GTSAC 2 cut(s) 109, 316
NsiI ATGCAT 1 cut(s) 450
PaqCI CACCTGC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 259
Pfl23II CGTACG 1 cut(s) 738
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 6 cut(s) 159, 438, 493, 622, 694, 760
PsiI TTATAA 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 715
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 715
PspLI CGTACG 1 cut(s) 738
PspN4I GGNNCC 1 cut(s) 745
PspPI GGNCC 1 cut(s) 866
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 2 cut(s) 692, 758
RsaI GTAC 4 cut(s) 391, 554, 602, 740
RsaNI GTAC 4 cut(s) 390, 553, 601, 739
SatI GCNGC 6 cut(s) 158, 437, 492, 621, 693, 759
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 866
ScrFI CCNGG 1 cut(s) 717
SduI GDGCHC 2 cut(s) 529, 748
SfaNI GCATC 1 cut(s) 581
SinI GGWCC 1 cut(s) 866
SmlI CTYRAG 2 cut(s) 104, 861
SmoI CTYRAG 2 cut(s) 104, 861
Sse9I AATT 2 cut(s) 14, 267
SsiI CCGC 4 cut(s) 157, 436, 539, 711
StyD4I CCNGG 1 cut(s) 715
TaaI ACNGT 3 cut(s) 115, 314, 743
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 455
TasI AATT 2 cut(s) 14, 267
TatI WGTACW 1 cut(s) 552
TauI GCSGC 2 cut(s) 160, 439
TfiI GAWTC 1 cut(s) 259
TscAI CASTG 2 cut(s) 118, 319
TseFI GTSAC 2 cut(s) 109, 316
TseI GCWGC 4 cut(s) 491, 620, 692, 758
Tsp45I GTSAC 2 cut(s) 109, 316
TspDTI ATGAA 2 cut(s) 302, 657
TspGWI ACGGA 4 cut(s) 30, 36, 237, 858
TspRI CASTG 2 cut(s) 118, 319
Van91I CCANNNNNTGG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 866
XagI CCTNNNNNAGG 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.