Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017738

Physical Location & Seq

Genomic Coordinates Forward (+)

45943214 .. 45944453

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25349

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGGAACTGGGCACTCAAGTATGGCAAACTCCAAAAGTTCATCAAATATGAGAAAGATGATGTTACAGGTCATAGAGCAAGCCACTGATGCAGAGAAAGCAACGGCTGTGTGTGAGTTTCTTGATTTCAAGTGCAGGAACAAGGTAATCTTTCATCAAATCTGTCTATCTGTTTTCTTTTCTTTGAATGGTGGCGATGTCTATCTGTCTTTCATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

73

Amino Acids

8.13

Weight (kDa)

7.74

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017738)

Species	Orthologous Gene IDs
malus_domestica	MD04G1223600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0055881 RchiOBHm_Chr6g0282731
rosa_laevigata	RLG00000022750 RLG00000034781 RLG00000035016
rosa_roxburghii	Rroxscaffold_7G00190100
rosa_rugosa	Rorug05G0166400
rosa_samantha	Rh5CG400100 Rh5CG459400 Rh6DG190400 Rh6DG256700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	130, 187
BaeGI	GKGCMC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	201
BseJI	GATNNNNATC	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 98
BstSLI	GKGCMC	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	81
CviJI	RGCY	2 cut(s)	83, 107
CviKI_1	RGCY	2 cut(s)	83, 107
FaiI	YATR	3 cut(s)	23, 50, 74
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FspEI	CC	9 cut(s)	8, 46, 53, 89, 97, 121, 128, 174, 177
Hpy188III	TCNNGA	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	92, 135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 98
LpnPI	CCDG	2 cut(s)	53, 121
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	15
MseI	TTAA	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	89, 98
SaqAI	TTAA	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	2 cut(s)	72, 147
SfaNI	GCATC	1 cut(s)	79
SgeI	CNNG	8 cut(s)	21, 30, 80, 92, 134, 142, 148, 154
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	220
Tru9I	TTAA	1 cut(s)	220
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	30, 143, 202
TspRI	CASTG	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.