Rorug05G0166400

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017738
Physical Location & Seq
Forward (+)
15459205 .. 15459579
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0166400.1

Sequence Viewer

Length: 375 bp
ATGTGGTTGTGTTCTGGCAATGGTGGTGGTGTTCTTGGTGGCGGGCCTTCTGATCCCCTTACGGGCGACATCGGGCGGTATAGCCAACCAAGCGGGATCGGGGGCGGATTTGGGATCCCGATTCGTGAGGCAGGTTGGGTAGCGTTGCTACAGGTGACTGATGCTGGTGATGGTTGCCTTTCTAGTGGTGATCTGGCTTTGGTCTGGGACAGATTCAGCGATTATGTCAGAGGTTTCAACGAGGACGGCGGCGCTGCAGATGGTGGCGGCGGTGGCGTGGTGATGGGAAAAGCTACTGCTCTAAGTGTCCTTAGCAGATCTGGTTGGGTCTGGGCCCTTTCATGGACTTGGGTTTCAATCTTTGCTAGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

124

Amino Acids

12.57

Weight (kDa)

4.39

Isoelectric Point (pI)

27.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017738)

Species Orthologous Gene IDs
malus_domestica MD04G1223600.v1.1
rosa_chinensis RchiOBHm_Chr5g0055881 RchiOBHm_Chr6g0282731
rosa_laevigata RLG00000022750 RLG00000034781 RLG00000035016
rosa_roxburghii Rroxscaffold_7G00190100
rosa_rugosa Rorug05G0166400
rosa_samantha Rh5CG400100 Rh5CG459400 Rh6DG190400 Rh6DG256700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AciI CCGC 7 cut(s) 42, 76, 93, 105, 249, 267, 270
AclWI GGATC 4 cut(s) 47, 104, 109, 122
AfiI CCNNNNNNNGG 2 cut(s) 62, 342
AgsI TTSAA 2 cut(s) 238, 357
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AlwI GGATC 4 cut(s) 47, 104, 109, 122
AoxI GGCC 2 cut(s) 44, 333
ApaI GGGCCC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 3 cut(s) 44, 333, 334
AsuHPI GGTGA 4 cut(s) 166, 179, 200, 292
BaeGI GKGCMC 1 cut(s) 337
BamHI GGATCC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 241
BccI CCATC 3 cut(s) 164, 254, 277
BceAI ACGGC 1 cut(s) 262
BfaI CTAG 2 cut(s) 183, 366
BfmI CTRYAG 2 cut(s) 149, 255
BfoI RGCGCY 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 317
BisI GCNGC 3 cut(s) 250, 255, 268
BlsI GCNGC 3 cut(s) 251, 256, 269
BmgT120I GGNCC 3 cut(s) 44, 333, 334
BmiI GGNNCC 2 cut(s) 116, 335
BmsI GCATC 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 311
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 342
Bse3DI GCAATG 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 62, 342
BseMI GCAATG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 2 cut(s) 46, 335
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 62, 342
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 2 cut(s) 46, 335
Bsp120I GGGCCC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 5 cut(s) 52, 96, 114, 190, 317
BspACI CCGC 7 cut(s) 42, 76, 93, 105, 249, 267, 270
BspANI GGCC 2 cut(s) 46, 335
BspLI GGNNCC 2 cut(s) 116, 335
BspMAI CTGCAG 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 4 cut(s) 47, 104, 109, 122
BsrDI GCAATG 1 cut(s) 25
BssMI GATC 5 cut(s) 52, 96, 114, 190, 317
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 3 cut(s) 302, 311, 372
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 5 cut(s) 55, 99, 117, 193, 320
BstMBI GATC 5 cut(s) 52, 96, 114, 190, 317
BstMWI GCNNNNNNNGC 2 cut(s) 90, 273
BstSFI CTRYAG 2 cut(s) 149, 255
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 2 cut(s) 114, 317
BstYI RGATCY 2 cut(s) 114, 317
BsuRI GGCC 2 cut(s) 46, 335
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 44, 333, 334
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 342
CviJI RGCY 6 cut(s) 46, 84, 197, 293, 335, 371
CviKI_1 RGCY 6 cut(s) 46, 84, 197, 293, 335, 371
DdeI CTNAG 3 cut(s) 302, 311, 372
DpnI GATC 5 cut(s) 54, 98, 116, 192, 319
DpnII GATC 5 cut(s) 52, 96, 114, 190, 317
EciI GGCGGA 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 337
FaeI CATG 1 cut(s) 345
FaiI YATR 3 cut(s) 81, 225, 343
FaqI GGGAC 1 cut(s) 221
FatI CATG 1 cut(s) 341
FauI CCCGC 2 cut(s) 35, 86
Fnu4HI GCNGC 3 cut(s) 250, 255, 268
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 3 cut(s) 250, 255, 268
FspBI CTAG 2 cut(s) 183, 366
GlaI GCGC 1 cut(s) 253
GluI GCNGC 3 cut(s) 250, 255, 268
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 2 cut(s) 46, 335
HhaI GCGC 1 cut(s) 254
Hin1II CATG 1 cut(s) 345
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 2 cut(s) 121, 213
HphI GGTGA 4 cut(s) 166, 179, 200, 292
Hpy188I TCNGA 2 cut(s) 52, 230
Hpy188III TCNNGA 2 cut(s) 118, 125
HpyAV CCTTC 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 273
HpyF3I CTNAG 3 cut(s) 302, 311, 372
Hsp92II CATG 1 cut(s) 345
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 5 cut(s) 52, 96, 114, 190, 317
LpnPI CCDG 7 cut(s) 117, 137, 150, 179, 190, 306, 316
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 183, 366
MaeIII GTNAC 1 cut(s) 154
MalI GATC 5 cut(s) 54, 98, 116, 192, 319
MboI GATC 5 cut(s) 52, 96, 114, 190, 317
MflI RGATCY 2 cut(s) 114, 317
MhlI GDGCHC 1 cut(s) 337
MnlI CCTC 3 cut(s) 121, 224, 235
MwoI GCNNNNNNNGC 2 cut(s) 90, 273
NdeII GATC 5 cut(s) 52, 96, 114, 190, 317
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 2 cut(s) 116, 335
NmuCI GTSAC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 121, 213
PkrI GCNGC 3 cut(s) 251, 256, 269
PspN4I GGNNCC 2 cut(s) 116, 335
PspOMI GGGCCC 1 cut(s) 333
PspPI GGNCC 3 cut(s) 44, 333, 334
PstI CTGCAG 1 cut(s) 259
PsuI RGATCY 2 cut(s) 114, 317
SatI GCNGC 3 cut(s) 250, 255, 268
Sau3AI GATC 5 cut(s) 52, 96, 114, 190, 317
Sau96I GGNCC 3 cut(s) 44, 333, 334
SduI GDGCHC 1 cut(s) 337
SetI ASST 4 cut(s) 136, 156, 235, 295
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 2 cut(s) 149, 255
SsiI CCGC 7 cut(s) 42, 76, 93, 105, 249, 267, 270
SspMI CTAG 2 cut(s) 183, 366
TauI GCSGC 2 cut(s) 252, 270
TfiI GAWTC 2 cut(s) 121, 213
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 330
XspI CTAG 2 cut(s) 183, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.