RLG00000022750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017738
Physical Location & Seq
Forward (+)
11522550 .. 11525282
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022750

Sequence Viewer

Length: 714 bp
ATGAAGCAAATCACTGATGCAGAGAAAGCAACGGCTATGTCTGAGTTTCTTGATTTCAAGTGCAGGAACAAGGTGATATTTGTCTTAGTTGATGAACATAATGATGCAATACAAGGATCTGTTAGAGAAGCATACTGCAGTATAATAGAACCACTTTTGCATAAAGGGCAAATGTTCGAAATAAGTTGTTTCTTCACAAGTCATAGCCAATCCTCTTTCAAGATTGTGCAACACTGGACAAGTCAATTTCAATTCCAAGACCATCATCAGGCATGCTCCCGAGCTACCTCCACGCATTCGAATGCACCGTTTCTTCCTGGTGTATACAACCATCTTGCCCCCGCATCAACAATGATCAAGTTCTTTCAGGTGAGCGGTGACGAAAATTCCATATCGTTAATAATGAGAATGGCTGATCAGAATGGTACTGATATCTTTGCTTTACCTAGCGGCTTAAGAGACTTCAAAGACTACGAGTGTAATAGGAGCATCCGTCGCATCGCCCACTATAGAGTCTATGTTGTAATCGAGGACCCAAACAATGAAGCCACACTGAAACTGATGGAAAAACAAGCCGAGCAACTATTTGGAACAAGCTGTAAGAACCCGATAAACAAGGAACCCTATGTAATGCAAGAAACAGTTCCAGAAGAGTCCTCCATCCGCTTCCTGACTAAAAAAGAGTCCCCGACAGAAGCAGAAGAGAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

27.12

Weight (kDa)

5.72

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017738)

Species Orthologous Gene IDs
malus_domestica MD04G1223600.v1.1
rosa_chinensis RchiOBHm_Chr5g0055881 RchiOBHm_Chr6g0282731
rosa_laevigata RLG00000022750 RLG00000034781 RLG00000035016
rosa_roxburghii Rroxscaffold_7G00190100
rosa_rugosa Rorug05G0166400
rosa_samantha Rh5CG400100 Rh5CG459400 Rh6DG190400 Rh6DG256700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 375
AccI GTMKAC 1 cut(s) 324
AciI CCGC 4 cut(s) 342, 375, 450, 664
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 385
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 1 cut(s) 268
AflII CTTAAG 1 cut(s) 454
AgsI TTSAA 4 cut(s) 58, 220, 251, 466
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 2 cut(s) 284, 597
AluI AGCT 2 cut(s) 284, 597
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 279
ApoI RAATTY 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 3 cut(s) 85, 382, 389
AsuII TTCGAA 2 cut(s) 177, 299
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 1 cut(s) 532
BccI CCATC 4 cut(s) 270, 339, 556, 668
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 2 cut(s) 354, 415
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 2 cut(s) 136, 508
BfrI CTTAAG 1 cut(s) 454
BisI GCNGC 1 cut(s) 451
BlsI GCNGC 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 2 cut(s) 534, 621
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 5 cut(s) 7, 94, 353, 498, 507
Bpu14I TTCGAA 2 cut(s) 177, 299
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 489, 660
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 670
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 670
BsmI GAATGC 2 cut(s) 295, 307
BsoBI CYCGRG 1 cut(s) 279
Bsp119I TTCGAA 2 cut(s) 177, 299
Bsp143I GATC 3 cut(s) 116, 354, 415
BspACI CCGC 4 cut(s) 342, 375, 450, 664
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 534, 621
BspMAI CTGCAG 1 cut(s) 140
BspPI GGATC 1 cut(s) 124
BspT104I TTCGAA 2 cut(s) 177, 299
BspTI CTTAAG 1 cut(s) 454
BsrBI CCGCTC 1 cut(s) 375
BsrI ACTGG 1 cut(s) 239
BssMI GATC 3 cut(s) 116, 354, 415
BssNAI GTATAC 1 cut(s) 325
Bst1107I GTATAC 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 309, 643
Bst6I CTCTTC 2 cut(s) 645, 696
BstAFI CTTAAG 1 cut(s) 454
BstBI TTCGAA 2 cut(s) 177, 299
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 42, 85
BstF5I GGATG 2 cut(s) 489, 660
BstKTI GATC 3 cut(s) 119, 357, 418
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 3 cut(s) 116, 354, 415
BstMWI GCNNNNNNNGC 3 cut(s) 26, 166, 495
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 2 cut(s) 136, 508
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BstZ17I GTATAC 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 484
BtsCI GGATG 2 cut(s) 489, 660
BtsIMutI CAGTG 3 cut(s) 12, 232, 551
Cac8I GCNNGC 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 532
Csp6I GTAC 1 cut(s) 426
CviAII CATG 1 cut(s) 273
CviJI RGCY 8 cut(s) 35, 207, 284, 413, 453, 548, 575, 597
CviKI_1 RGCY 8 cut(s) 35, 207, 284, 413, 453, 548, 575, 597
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 2 cut(s) 42, 85
DpnI GATC 3 cut(s) 118, 356, 417
DpnII GATC 3 cut(s) 116, 354, 415
Eam1104I CTCTTC 2 cut(s) 645, 696
EarI CTCTTC 2 cut(s) 645, 696
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 532
Eco88I CYCGRG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 316
EcoRV GATATC 1 cut(s) 433
FaeI CATG 1 cut(s) 276
FaqI GGGAC 1 cut(s) 670
FatI CATG 1 cut(s) 272
FauI CCCGC 1 cut(s) 349
FbaI TGATCA 2 cut(s) 354, 415
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 451
FokI GGATG 2 cut(s) 476, 647
Fsp4HI GCNGC 1 cut(s) 451
FspBI CTAG 1 cut(s) 447
GluI GCNGC 1 cut(s) 451
Hin1II CATG 1 cut(s) 276
HinfI GANTC 3 cut(s) 513, 653, 683
HphI GGTGA 3 cut(s) 85, 382, 389
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 43, 420
Hpy188III TCNNGA 5 cut(s) 50, 220, 279, 647, 670
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 1 cut(s) 498
HpyCH4III ACNGT 2 cut(s) 309, 643
HpyCH4V TGCA 8 cut(s) 20, 63, 107, 138, 160, 229, 305, 634
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 166, 495
HpyF3I CTNAG 2 cut(s) 42, 85
Hsp92II CATG 1 cut(s) 276
Ksp22I TGATCA 2 cut(s) 354, 415
Kzo9I GATC 3 cut(s) 116, 354, 415
LmnI GCTCC 2 cut(s) 281, 486
LpnPI CCDG 8 cut(s) 49, 220, 254, 303, 330, 353, 660, 683
LweI GCATC 5 cut(s) 7, 94, 353, 498, 507
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 377
MalI GATC 3 cut(s) 118, 356, 417
MbiI CCGCTC 1 cut(s) 375
MboI GATC 3 cut(s) 116, 354, 415
MboII GAAGA 4 cut(s) 184, 305, 662, 713
MflI RGATCY 1 cut(s) 116
MluCI AATT 4 cut(s) 245, 251, 385, 706
MlyI GAGTC 3 cut(s) 522, 662, 692
MnlI CCTC 4 cut(s) 223, 298, 523, 667
MroXI GAANNNNTTC 1 cut(s) 642
MseI TTAA 2 cut(s) 398, 455
MslI CAYNNNNRTG 2 cut(s) 102, 300
MspCI CTTAAG 1 cut(s) 454
MspR9I CCNGG 1 cut(s) 318
Mva1269I GAATGC 2 cut(s) 295, 307
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 26, 166, 495
NdeII GATC 3 cut(s) 116, 354, 415
NlaIII CATG 1 cut(s) 276
NlaIV GGNNCC 2 cut(s) 534, 621
NmeAIII GCCGAG 1 cut(s) 601
NmuCI GTSAC 1 cut(s) 377
NspI RCATGY 1 cut(s) 276
NspV TTCGAA 2 cut(s) 177, 299
PaeI GCATGC 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PctI GAATGC 2 cut(s) 295, 307
PdmI GAANNNNTTC 1 cut(s) 642
PkrI GCNGC 1 cut(s) 452
PleI GAGTC 3 cut(s) 521, 661, 691
PpsI GAGTC 3 cut(s) 521, 661, 691
PpuMI RGGWCCY 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 534, 621
PspPI GGNCC 1 cut(s) 532
PspPPI RGGWCCY 1 cut(s) 532
PstI CTGCAG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 2 cut(s) 102, 300
SaqAI TTAA 2 cut(s) 398, 455
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 3 cut(s) 116, 354, 415
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 3 cut(s) 522, 662, 692
ScrFI CCNGG 1 cut(s) 318
SetI ASST 6 cut(s) 75, 286, 290, 372, 448, 599
SfaNI GCATC 5 cut(s) 7, 94, 353, 498, 507
SfcI CTRYAG 2 cut(s) 136, 508
SfuI TTCGAA 2 cut(s) 177, 299
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 2 cut(s) 102, 300
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
SphI GCATGC 1 cut(s) 276
Sse9I AATT 4 cut(s) 245, 251, 385, 706
SsiI CCGC 4 cut(s) 342, 375, 450, 664
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 309, 643
TaqI TCGA 3 cut(s) 177, 299, 528
TasI AATT 4 cut(s) 245, 251, 385, 706
TauI GCSGC 1 cut(s) 453
Tru1I TTAA 2 cut(s) 398, 455
Tru9I TTAA 2 cut(s) 398, 455
TscAI CASTG 3 cut(s) 19, 239, 558
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 17, 108, 558
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 3 cut(s) 19, 239, 558
Vha464I CTTAAG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 1 cut(s) 385
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 642
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.