Rroxscaffold_7G00190100

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
30148514 .. 30150092
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190100.1

Sequence Viewer

Length: 246 bp
ATGGGTGTTGAGATGACGTGTTTGAAACCTAGAAGCCCACCTAGCCTAAATTCTATCCCTTCCACCGTTTTTGCCTTTGACTCCTTTTCTTTTTGGATTTTGGGTTCCCATCGAGAAACTGATTTGGGGAGGGTACTACATAGTTCCAGATTTCTTTGCTTTCAGACGGGGATTGAAGAGAAGAAAGAGAAACTGATTTGGGATGGCTCTTCCAACTACTGTCAGACATTTGCTCAAGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.24

Weight (kDa)

5.58

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017738)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 2 cut(s) 25, 176
AjiI CACGTC 1 cut(s) 18
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
ApoI RAATTY 1 cut(s) 49
BccI CCATC 2 cut(s) 117, 197
BfaI CTAG 2 cut(s) 30, 42
BmgBI CACGTC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 219
BseGI GGATG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 67, 221
Bst6I CTCTTC 2 cut(s) 171, 214
BstF5I GGATG 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 42
BtrI CACGTC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 208
Csp6I GTAC 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviJI RGCY 3 cut(s) 36, 45, 207
CviKI_1 RGCY 3 cut(s) 36, 45, 207
CviQI GTAC 1 cut(s) 134
Eam1104I CTCTTC 2 cut(s) 171, 214
EarI CTCTTC 2 cut(s) 171, 214
FaiI YATR 1 cut(s) 141
FokI GGATG 1 cut(s) 215
FspBI CTAG 2 cut(s) 30, 42
HinfI GANTC 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 165, 225
Hpy188III TCNNGA 3 cut(s) 113, 147, 236
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 2 cut(s) 67, 221
HpyCH4IV ACGT 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 17
LguI GCTCTTC 1 cut(s) 214
LpnPI CCDG 1 cut(s) 160
MaeI CTAG 2 cut(s) 30, 42
MaeII ACGT 1 cut(s) 17
MboII GAAGA 3 cut(s) 188, 193, 201
MluCI AATT 1 cut(s) 49
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 2 cut(s) 123, 232
MwoI GCNNNNNNNGC 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 214
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 106
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 214
SchI GAGTC 1 cut(s) 74
SetI ASST 3 cut(s) 20, 31, 43
SgeI CNNG 6 cut(s) 30, 42, 54, 125, 159, 180
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 1 cut(s) 49
SspMI CTAG 2 cut(s) 30, 42
TaaI ACNGT 2 cut(s) 67, 221
TaiI ACGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 112
TasI AATT 1 cut(s) 49
XapI RAATTY 1 cut(s) 49
XspI CTAG 2 cut(s) 30, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.