Rh5CG459400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017738
Physical Location & Seq
Reverse (-)
63958801 .. 63969769
10969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG459400.1

Sequence Viewer

Length: 276 bp
ATGCATGCATTCAAATACGACCAGTGTGGCGGAGCTGGAGCGGAGGTCATGGAGCAAGCCACTGATGCAGAGAAAGCAGCGGCCATGTCTGAGTTTCGTGATTTCAAGCGCAGGAACAATAATACAACAGCCGCAACTTACAACCCAAACGACCGTTATAACGGAGGGACAATGTGGACATTTCCAAGCGCTAAAGATAGAGGGGCTCCAATCAATGAGAAGGAGAAGAGACACCACGTTCATCGAATACGCTTGAAACTCAAAGTAGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.41

Weight (kDa)

9.56

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017738)

Species Orthologous Gene IDs
malus_domestica MD04G1223600.v1.1
rosa_chinensis RchiOBHm_Chr5g0055881 RchiOBHm_Chr6g0282731
rosa_laevigata RLG00000022750 RLG00000034781 RLG00000035016
rosa_roxburghii Rroxscaffold_7G00190100
rosa_rugosa Rorug05G0166400
rosa_samantha Rh5CG400100 Rh5CG459400 Rh6DG190400 Rh6DG256700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AccBSI CCGCTC 1 cut(s) 41
AciI CCGC 4 cut(s) 30, 41, 80, 132
AcoI YGGCCR 1 cut(s) 81
AfeI AGCGCT 1 cut(s) 190
AgsI TTSAA 3 cut(s) 13, 106, 256
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 223
Aor51HI AGCGCT 1 cut(s) 190
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 77
AspLEI GCGC 2 cut(s) 111, 191
BanII GRGCYC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 223
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 3 cut(s) 78, 81, 132
BlsI GCNGC 3 cut(s) 79, 82, 133
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bse1I ACTGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 8
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 208
BspACI CCGC 4 cut(s) 30, 41, 80, 132
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 6, 57
BstDEI CTNAG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 111, 191
BstMAI GTCTC 1 cut(s) 223
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 65, 74
BstNSI RCATGY 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 29, 60
Cac8I GCNNGC 2 cut(s) 6, 57
CfoI GCGC 2 cut(s) 111, 191
CviAII CATG 3 cut(s) 5, 49, 85
CviJI RGCY 5 cut(s) 35, 59, 83, 131, 206
CviKI_1 RGCY 5 cut(s) 35, 59, 83, 131, 206
DdeI CTNAG 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EciI GGCGGA 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 208
Eco47III AGCGCT 1 cut(s) 190
EcoT22I ATGCAT 2 cut(s) 6, 10
EcoT38I GRGCYC 1 cut(s) 208
FaeI CATG 3 cut(s) 8, 52, 88
FaiI YATR 4 cut(s) 6, 50, 86, 159
FaqI GGGAC 1 cut(s) 181
FatI CATG 3 cut(s) 4, 48, 84
Fnu4HI GCNGC 3 cut(s) 78, 81, 132
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 3 cut(s) 78, 81, 132
GlaI GCGC 2 cut(s) 110, 190
GluI GCNGC 3 cut(s) 78, 81, 132
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 1 cut(s) 83
HhaI GCGC 2 cut(s) 111, 191
Hin1II CATG 3 cut(s) 8, 52, 88
Hin6I GCGC 2 cut(s) 109, 189
HinP1I GCGC 2 cut(s) 109, 189
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 4, 8, 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 74
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 8, 52, 88
HspAI GCGC 2 cut(s) 109, 189
LmnI GCTCC 4 cut(s) 32, 38, 52, 211
LpnPI CCDG 3 cut(s) 21, 35, 97
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 55
MaeII ACGT 1 cut(s) 237
MbiI CCGCTC 1 cut(s) 41
MboII GAAGA 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 208
MnlI CCTC 3 cut(s) 37, 158, 194
Mph1103I ATGCAT 2 cut(s) 6, 10
MspA1I CMGCKG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 65, 74
NlaIII CATG 3 cut(s) 8, 52, 88
NlaIV GGNNCC 1 cut(s) 207
NsiI ATGCAT 2 cut(s) 6, 10
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PctI GAATGC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 79, 82, 133
PsiI TTATAA 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 207
SatI GCNGC 3 cut(s) 78, 81, 132
SduI GDGCHC 1 cut(s) 208
SetI ASST 3 cut(s) 37, 48, 240
SfaNI GCATC 1 cut(s) 55
SphI GCATGC 1 cut(s) 8
SsiI CCGC 4 cut(s) 30, 41, 80, 132
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 244
TauI GCSGC 2 cut(s) 83, 134
TscAI CASTG 2 cut(s) 29, 67
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 29, 67
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 2 cut(s) 6, 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.