Lysine-specific histone demethylase
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD04G1223600.v1.1 |
| rosa_chinensis | RchiOBHm_Chr5g0055881 RchiOBHm_Chr6g0282731 |
| rosa_laevigata | RLG00000022750 RLG00000034781 RLG00000035016 |
| rosa_roxburghii | Rroxscaffold_7G00190100 |
| rosa_rugosa | Rorug05G0166400 |
| rosa_samantha | Rh5CG400100 Rh5CG459400 Rh6DG190400 Rh6DG256700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AflIII | ACRYGT | 1 cut(s) | 256 |
| AgsI | TTSAA | 2 cut(s) | 130, 167 |
| AluBI | AGCT | 2 cut(s) | 180, 186 |
| AluI | AGCT | 2 cut(s) | 180, 186 |
| BaeGI | GKGCMC | 1 cut(s) | 15 |
| BanII | GRGCYC | 1 cut(s) | 283 |
| BauI | CACGAG | 1 cut(s) | 175 |
| BccI | CCATC | 1 cut(s) | 242 |
| BceAI | ACGGC | 1 cut(s) | 120 |
| BciVI | GTATCC | 1 cut(s) | 246 |
| BfmI | CTRYAG | 1 cut(s) | 181 |
| BfuI | GTATCC | 1 cut(s) | 246 |
| BmrI | ACTGGG | 1 cut(s) | 18 |
| BmsI | GCATC | 1 cut(s) | 79 |
| BmuI | ACTGGG | 1 cut(s) | 18 |
| BpmI | CTGGAG | 1 cut(s) | 259 |
| BpuEI | CTTGAG | 1 cut(s) | 205 |
| BsaAI | YACGTR | 1 cut(s) | 257 |
| Bse1I | ACTGG | 2 cut(s) | 13, 242 |
| BseNI | ACTGG | 2 cut(s) | 13, 242 |
| BseSI | GKGCMC | 1 cut(s) | 15 |
| BsgI | GTGCAG | 1 cut(s) | 154 |
| Bsp1286I | GDGCHC | 2 cut(s) | 15, 283 |
| Bsp143I | GATC | 2 cut(s) | 171, 286 |
| BspQI | GCTCTTC | 1 cut(s) | 200 |
| BsrI | ACTGG | 2 cut(s) | 13, 242 |
| BssMI | GATC | 2 cut(s) | 171, 286 |
| BssSI | CACGAG | 1 cut(s) | 175 |
| Bst2BI | CACGAG | 1 cut(s) | 175 |
| Bst4CI | ACNGT | 1 cut(s) | 207 |
| Bst6I | CTCTTC | 1 cut(s) | 200 |
| BstBAI | YACGTR | 1 cut(s) | 257 |
| BstC8I | GCNNGC | 1 cut(s) | 81 |
| BstDEI | CTNAG | 1 cut(s) | 323 |
| BstKTI | GATC | 2 cut(s) | 174, 289 |
| BstMBI | GATC | 2 cut(s) | 171, 286 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 98 |
| BstSFI | CTRYAG | 1 cut(s) | 181 |
| BstSLI | GKGCMC | 1 cut(s) | 15 |
| BsuI | GTATCC | 1 cut(s) | 246 |
| BtsIMutI | CAGTG | 1 cut(s) | 84 |
| Cac8I | GCNNGC | 1 cut(s) | 81 |
| CviJI | RGCY | 7 cut(s) | 83, 107, 151, 180, 186, 281, 327 |
| CviKI_1 | RGCY | 7 cut(s) | 83, 107, 151, 180, 186, 281, 327 |
| DdeI | CTNAG | 1 cut(s) | 323 |
| DpnI | GATC | 2 cut(s) | 173, 288 |
| DpnII | GATC | 2 cut(s) | 171, 286 |
| Eam1104I | CTCTTC | 1 cut(s) | 200 |
| EarI | CTCTTC | 1 cut(s) | 200 |
| Eco24I | GRGCYC | 1 cut(s) | 283 |
| EcoT38I | GRGCYC | 1 cut(s) | 283 |
| FaiI | YATR | 6 cut(s) | 23, 50, 74, 294, 302, 336 |
| FriOI | GRGCYC | 1 cut(s) | 283 |
| GsuI | CTGGAG | 1 cut(s) | 259 |
| HinfI | GANTC | 1 cut(s) | 296 |
| Hpy188I | TCNGA | 1 cut(s) | 211 |
| Hpy188III | TCNNGA | 5 cut(s) | 122, 175, 222, 262, 284 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 207 |
| HpyCH4IV | ACGT | 1 cut(s) | 256 |
| HpyCH4V | TGCA | 2 cut(s) | 92, 135 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 98 |
| HpyF3I | CTNAG | 1 cut(s) | 323 |
| HpySE526I | ACGT | 1 cut(s) | 256 |
| Kzo9I | GATC | 2 cut(s) | 171, 286 |
| LguI | GCTCTTC | 1 cut(s) | 200 |
| LmnI | GCTCC | 1 cut(s) | 240 |
| LpnPI | CCDG | 4 cut(s) | 53, 121, 223, 275 |
| LweI | GCATC | 1 cut(s) | 79 |
| MaeII | ACGT | 1 cut(s) | 256 |
| MaeIII | GTNAC | 1 cut(s) | 63 |
| MalI | GATC | 2 cut(s) | 173, 288 |
| MboI | GATC | 2 cut(s) | 171, 286 |
| MboII | GAAGA | 2 cut(s) | 187, 277 |
| MhlI | GDGCHC | 2 cut(s) | 15, 283 |
| MluCI | AATT | 1 cut(s) | 358 |
| MmeI | TCCRAC | 1 cut(s) | 223 |
| MnlI | CCTC | 3 cut(s) | 141, 218, 335 |
| MseI | TTAA | 1 cut(s) | 361 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 98 |
| NdeII | GATC | 2 cut(s) | 171, 286 |
| PciSI | GCTCTTC | 1 cut(s) | 200 |
| PfeI | GAWTC | 1 cut(s) | 296 |
| Ppu21I | YACGTR | 1 cut(s) | 257 |
| SapI | GCTCTTC | 1 cut(s) | 200 |
| SaqAI | TTAA | 1 cut(s) | 361 |
| Sau3AI | GATC | 2 cut(s) | 171, 286 |
| SduI | GDGCHC | 2 cut(s) | 15, 283 |
| SetI | ASST | 4 cut(s) | 72, 182, 188, 259 |
| SfaNI | GCATC | 1 cut(s) | 79 |
| SfcI | CTRYAG | 1 cut(s) | 181 |
| SmlI | CTYRAG | 2 cut(s) | 16, 220 |
| SmoI | CTYRAG | 2 cut(s) | 16, 220 |
| Sse9I | AATT | 1 cut(s) | 358 |
| TaaI | ACNGT | 1 cut(s) | 207 |
| TaiI | ACGT | 1 cut(s) | 259 |
| TaqI | TCGA | 2 cut(s) | 285, 340 |
| TasI | AATT | 1 cut(s) | 358 |
| TfiI | GAWTC | 1 cut(s) | 296 |
| Tru1I | TTAA | 1 cut(s) | 361 |
| Tru9I | TTAA | 1 cut(s) | 361 |
| TscAI | CASTG | 1 cut(s) | 91 |
| TspDTI | ATGAA | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 91 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 269 |