Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017738

Physical Location & Seq

Genomic Coordinates Forward (+)

34057470 .. 34063967

Gene Structure 6498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG190400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGAAGGTCATAGAGCAAGCCACTGATGCAGAGAAAGCAACGGCTATGTGTGAGTTTCTTGATTTCAAGCGCAGGAACAAGGAGAGGCTGAAAGAAGTTATTGAACAAATCACGAGCTGTAGCTTCTTGGTGAGTAGTCTGTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

49

Amino Acids

5.64

Weight (kDa)

6.16

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017738)

Species	Orthologous Gene IDs
malus_domestica	MD04G1223600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0055881 RchiOBHm_Chr6g0282731
rosa_laevigata	RLG00000022750 RLG00000034781 RLG00000035016
rosa_roxburghii	Rroxscaffold_7G00190100
rosa_rugosa	Rorug05G0166400
rosa_samantha	Rh5CG400100 Rh5CG459400 Rh6DG190400 Rh6DG256700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	67, 104
AluBI	AGCT	2 cut(s)	117, 123
AluI	AGCT	2 cut(s)	117, 123
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	142
BauI	CACGAG	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	16
BssSI	CACGAG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 35
BstSFI	CTRYAG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	72
CviJI	RGCY	5 cut(s)	20, 44, 88, 117, 123
CviKI_1	RGCY	5 cut(s)	20, 44, 88, 117, 123
FaiI	YATR	2 cut(s)	11, 47
FspEI	CC	6 cut(s)	26, 34, 58, 65, 70, 113
GlaI	GCGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	59, 112
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 35
HspAI	GCGC	1 cut(s)	70
LpnPI	CCDG	1 cut(s)	58
LweI	GCATC	1 cut(s)	16
MnlI	CCTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	26, 35
SaqAI	TTAA	1 cut(s)	148
SetI	ASST	3 cut(s)	9, 119, 125
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	118
SgeI	CNNG	8 cut(s)	29, 71, 79, 85, 91, 124, 126, 139
Tru1I	TTAA	1 cut(s)	148
Tru9I	TTAA	1 cut(s)	148
TscAI	CASTG	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.